Moc08g21730 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g21730
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr8: 16007482 .. 16007979 (-)
RNA-Seq Expression	Moc08g21730
Synteny	Moc08g21730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGACAACCGTCCTCACAGGCTCGGCATGAAGCCCTTAAGTTCATTTACAACTTTTGCATGAAGGAGGGCTCCTCAGTGCGAGAACACATTCTCAACCTGATGGTCCACTTTAACGTGGCAGAGTCGAACGAGGCCGTCATAGACGAGCAGAGTCAGGTCAGCTTCATTCTGGAATCTCTTCTGAAGAGTTTCCTGCCATTCCGTAGTAATGTTGTTATGAATAAGCTGGAGTACACTCTTACCACGCTATTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAAGGTAAGGGACAAGAAGGGGAGGCAAATGTTGTCACCTCAAATAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCGCCCTCTTCTTCTCTAAGTAAGATTTTCAAGAAGAAGAAGGCTGCTGGTAAGCGGTCTAAACCTGACTCCGATGCTGCCGCTGCCAACAAAGGAAACTGTTTCCACTGTAACATGGACGGGCATTGA

mRNA sequence

ATGTTTGGACAACCGTCCTCACAGGCTCGGCATGAAGCCCTTAAGTTCATTTACAACTTTTGCATGAAGGAGGGCTCCTCAGTGCGAGAACACATTCTCAACCTGATGGTCCACTTTAACGTGGCAGAGTCGAACGAGGCCGTCATAGACGAGCAGAGTCAGGTCAGCTTCATTCTGGAATCTCTTCTGAAGAGTTTCCTGCCATTCCGTAGTAATGTTGTTATGAATAAGCTGGAGTACACTCTTACCACGCTATTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAAGGTAAGGGACAAGAAGGGGAGGCAAATGTTGTCACCTCAAATAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCGCCCTCTTCTTCTCTAAGTAAGATTTTCAAGAAGAAGAAGGCTGCTGGTAAGCGGTCTAAACCTGACTCCGATGCTGCCGCTGCCAACAAAGGAAACTGTTTCCACTGTAACATGGACGGGCATTGA

Coding sequence (CDS)

ATGTTTGGACAACCGTCCTCACAGGCTCGGCATGAAGCCCTTAAGTTCATTTACAACTTTTGCATGAAGGAGGGCTCCTCAGTGCGAGAACACATTCTCAACCTGATGGTCCACTTTAACGTGGCAGAGTCGAACGAGGCCGTCATAGACGAGCAGAGTCAGGTCAGCTTCATTCTGGAATCTCTTCTGAAGAGTTTCCTGCCATTCCGTAGTAATGTTGTTATGAATAAGCTGGAGTACACTCTTACCACGCTATTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAAGGTAAGGGACAAGAAGGGGAGGCAAATGTTGTCACCTCAAATAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCGCCCTCTTCTTCTCTAAGTAAGATTTTCAAGAAGAAGAAGGCTGCTGGTAAGCGGTCTAAACCTGACTCCGATGCTGCCGCTGCCAACAAAGGAAACTGTTTCCACTGTAACATGGACGGGCATTGA

Protein sequence

MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILESLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNRFNRGSSSGTKSAPSSSLSKIFKKKKAAGKRSKPDSDAAAANKGNCFHCNMDGH

Homology

[Close]

BLAST of Moc08g21730 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 7.7e-48
Identity = 115/171 (67.25%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILE 60
           MFGQ S Q +H+ALK+IYN  M EG+SVREH+LN+MVHFNVAE N AVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNR-FNRGSSS 120
           SL +SFL FRSN VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS R F+RGS+S
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTS 220

Query: 121 GTKSAPSSSLSKIFKKKKA-----AGKRSKPDSDAAAANKGNCFHCNMDGH 166
           GTKS PSSS +K +KKKK      A   +   +  A A KG CFHCN +GH
Sbjct: 221 GTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGH 271

[Close]

BLAST of Moc08g21730 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 7.7e-48
Identity = 115/171 (67.25%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILE 60
           MFGQ S Q +H+ALK+IYN  M EG+SVREH+LN+MVHFNVAE N AVIDE SQVSFILE
Sbjct: 100 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 159

Query: 61  SLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNR-FNRGSSS 120
           SL +SFL FRSN VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS R F+RGS+S
Sbjct: 160 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTS 219

Query: 121 GTKSAPSSSLSKIFKKKKA-----AGKRSKPDSDAAAANKGNCFHCNMDGH 166
           GTKS PSSS +K +KKKK      A   +   +  A A KG CFHCN +GH
Sbjct: 220 GTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGH 270

[Close]

BLAST of Moc08g21730 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 7.7e-48
Identity = 117/172 (68.02%), Postives = 136/172 (79.07%), Query Frame = 0


Query: 1   MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILE 60
           MFGQ S Q +H+ALK+IYN  M EG+SVREH+LN+MVHFNVAE N AVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNR-FNRGSSS 120
           SL +SFL FRSN VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS R F+RGS+S
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTS 220

Query: 121 GTKSAPSSSLSKIFKKKKAAGKRSKPDSDAA------AANKGNCFHCNMDGH 166
           GTKS PSSS +K +KKKK  G+ +K +  AA       A KG CFHCN +GH
Sbjct: 221 GTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTKKTKAAKGICFHCNQEGH 271

[Close]

BLAST of Moc08g21730 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 7.7e-48
Identity = 115/171 (67.25%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILE 60
           MFGQ S Q +H+ALK+IYN  M EG+SVREH+LN+MVHFNVAE N AVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNR-FNRGSSS 120
           SL +SFL FRSN VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS R F+RGS+S
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTS 220

Query: 121 GTKSAPSSSLSKIFKKKKA-----AGKRSKPDSDAAAANKGNCFHCNMDGH 166
           GTKS PSSS +K +KKKK      A   +   +  A A KG CFHCN +GH
Sbjct: 221 GTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGH 271

[Close]

BLAST of Moc08g21730 vs. NCBI nr
Match: KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 7.7e-48
Identity = 115/171 (67.25%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILE 60
           MFGQ S Q +H+ALK+IYN  M EG+SVREH+LN+MVHFNVAE N AVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNR-FNRGSSS 120
           SL +SFL FRSN VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS R F+RGS+S
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTS 220

Query: 121 GTKSAPSSSLSKIFKKKKA-----AGKRSKPDSDAAAANKGNCFHCNMDGH 166
           GTKS PSSS +K +KKKK      A   +   +  A A KG CFHCN +GH
Sbjct: 221 GTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGH 271

[Close]

BLAST of Moc08g21730 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.7e-48
Identity = 115/171 (67.25%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILE 60
           MFGQ S Q +H+ALK+IYN  M EG+SVREH+LN+MVHFNVAE N AVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNR-FNRGSSS 120
           SL +SFL FRSN VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS R F+RGS+S
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTS 220

Query: 121 GTKSAPSSSLSKIFKKKKA-----AGKRSKPDSDAAAANKGNCFHCNMDGH 166
           GTKS PSSS +K +KKKK      A   +   +  A A KG CFHCN +GH
Sbjct: 221 GTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGH 271

[Close]

BLAST of Moc08g21730 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.7e-48
Identity = 117/172 (68.02%), Postives = 136/172 (79.07%), Query Frame = 0


Query: 1   MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILE 60
           MFGQ S Q +H+ALK+IYN  M EG+SVREH+LN+MVHFNVAE N AVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNR-FNRGSSS 120
           SL +SFL FRSN VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS R F+RGS+S
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTS 220

Query: 121 GTKSAPSSSLSKIFKKKKAAGKRSKPDSDAA------AANKGNCFHCNMDGH 166
           GTKS PSSS +K +KKKK  G+ +K +  AA       A KG CFHCN +GH
Sbjct: 221 GTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTKKTKAAKGICFHCNQEGH 271

[Close]

BLAST of Moc08g21730 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.7e-48
Identity = 115/171 (67.25%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILE 60
           MFGQ S Q +H+ALK+IYN  M EG+SVREH+LN+MVHFNVAE N AVIDE SQVSFILE
Sbjct: 218 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 277

Query: 61  SLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNR-FNRGSSS 120
           SL +SFL FRSN VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS R F+RGS+S
Sbjct: 278 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTS 337

Query: 121 GTKSAPSSSLSKIFKKKKA-----AGKRSKPDSDAAAANKGNCFHCNMDGH 166
           GTKS PSSS +K +KKKK      A   +   +  A A KG CFHCN +GH
Sbjct: 338 GTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGH 388

[Close]

BLAST of Moc08g21730 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.7e-48
Identity = 115/171 (67.25%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILE 60
           MFGQ S Q +H+ALK+IYN  M EG+SVREH+LN+MVHFNVAE N AVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNR-FNRGSSS 120
           SL +SFL FRSN VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS R F+RGS+S
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTS 220

Query: 121 GTKSAPSSSLSKIFKKKKA-----AGKRSKPDSDAAAANKGNCFHCNMDGH 166
           GTKS PSSS +K +KKKK      A   +   +  A A KG CFHCN +GH
Sbjct: 221 GTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGH 271

[Close]

BLAST of Moc08g21730 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.7e-48
Identity = 115/171 (67.25%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MFGQPSSQARHEALKFIYNFCMKEGSSVREHILNLMVHFNVAESNEAVIDEQSQVSFILE 60
           MFGQ S Q +H+ALK+IYN  M EG+SVREH+LN+MVHFNVAE N AVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLLKSFLPFRSNVVMNKLEYTLTTLLNELQTYQSLMKGKGQEGEANVVTSNR-FNRGSSS 120
           SL +SFL FRSN VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANV TS R F+RGS+S
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTS 220

Query: 121 GTKSAPSSSLSKIFKKKKA-----AGKRSKPDSDAAAANKGNCFHCNMDGH 166
           GTKS PSSS +K +KKKK      A   +   +  A A KG CFHCN +GH
Sbjct: 221 GTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAAKGICFHCNQEGH 271

The following BLAST results are available for this feature:

BLAST of Moc08g21730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	7.7e-48	67.25	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	7.7e-48	67.25	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	7.7e-48	68.02	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	7.7e-48	67.25	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051952.1	7.7e-48	67.25	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc08g21730 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g21730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	3.7e-48	67.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	3.7e-48	68.02	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	3.7e-48	67.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	3.7e-48	67.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	3.7e-48	67.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Moc08g21730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 9..93 e-value: 5.0E-9 score: 36.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..130
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..160
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g21730.1	Moc08g21730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding