Moc08g18460 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g18460
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr8: 13971921 .. 13972802 (-)
RNA-Seq ExpressionMoc08g18460
SyntenyMoc08g18460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGATAGGTACGACTCAGCCTGTCCCATTTCGTCGCAGTTGGACGACGAGTTCCAAAGATGGATGGATGACCCAAACAGTGACGGAATATGGCAGTCAACTGCAACTGGTATGCAAAAGAAGGAATGGTATCGCAATCTATTGGACGCTACGATCGAATTGAAGGAAGAAGTAAGTACATACTACTCAATTCGTAGTTTTATATTTGTCAATATTTTTATCACATCGATTTGGGTTGGTTAAATGTAACAGGTAGTTGATGGTCTCGTCCTATTTACGGCTAAAAAATTAGAGAAGCGTCTCCATCTATGTCGCAAAAAGTTTGCGATGGGCGACGTACTTCTTTCGGTAAATGCCTTTTACTGCTTTTGGTTCGAATTAATAAGACGATTTTTTAATTGCATGTGTAACTAATAAAACGATTTTTTTAATTACTTGTGTAAGTAAAAAGAATTATTTTTCAATTACTGAACAGACACTGCTTAACCGAACGAATGGTCCGTATGCAGCCATGAAGTCGGGTGTCTTGTCCACGAGAATCAAGTACCCCTGGAGCAATGAGAAGACCATCTTCCGATACGTATTTGGTAGGCAGTCGGACCACAAAATGCCTTGAAGTCATGCAGACATGGTGTACATCCCGATCAACGTAGGCAGGAGCCACTAGGTGATGTTCGACATCGATCTTGTAGAAGGCGACATAACCATATGGGATTCACTCCATACGACCACTCCACTGAATGCACTCGAGAAGGAGCTGAAGCCCATGTGTACGATCCTACCTGTGGTGTTGCACCATGGTGGGGTGTTTTCAATTCGACCCGACTTGTCCATGGTGCCATGGAGGTTGCGTCGGGTTCGCGCATCCCAACAGAGTAG

mRNA sequence

ATGATGGATAGGTACGACTCAGCCTGTCCCATTTCGTCGCAGTTGGACGACGAGTTCCAAAGATGGATGGATGACCCAAACAGTGACGGAATATGGCAGTCAACTGCAACTGGTATGCAAAAGAAGGAATGGTATCGCAATCTATTGGACGCTACGATCGAATTGAAGGAAGAAGTAGTTGATGGTCTCGTCCTATTTACGGCTAAAAAATTAGAGAAGCGTCTCCATCTATGTCGCAAAAAGTTTGCGATGGGCGACGTACTTCTTTCGGCAGTCGGACCACAAAATGCCTTGAAGTCATGCAGACATGGTGTACATCCCGATCAACGTAGGCAGGAGCCACTAGGTGATGTTCGACATCGATCTTGTAGAAGGCGACATAACCATATGGGATTCACTCCATACGACCACTCCACTGAATGCACTCGAGAAGGAGCTGAAGCCCATGTGTACGATCCTACCTGTGGTGTTGCACCATGGTGGGGTGTTTTCAATTCGACCCGACTTGTCCATGGTGCCATGGAGGTTGCGTCGGGTTCGCGCATCCCAACAGAGTAG

Coding sequence (CDS)

ATGATGGATAGGTACGACTCAGCCTGTCCCATTTCGTCGCAGTTGGACGACGAGTTCCAAAGATGGATGGATGACCCAAACAGTGACGGAATATGGCAGTCAACTGCAACTGGTATGCAAAAGAAGGAATGGTATCGCAATCTATTGGACGCTACGATCGAATTGAAGGAAGAAGTAGTTGATGGTCTCGTCCTATTTACGGCTAAAAAATTAGAGAAGCGTCTCCATCTATGTCGCAAAAAGTTTGCGATGGGCGACGTACTTCTTTCGGCAGTCGGACCACAAAATGCCTTGAAGTCATGCAGACATGGTGTACATCCCGATCAACGTAGGCAGGAGCCACTAGGTGATGTTCGACATCGATCTTGTAGAAGGCGACATAACCATATGGGATTCACTCCATACGACCACTCCACTGAATGCACTCGAGAAGGAGCTGAAGCCCATGTGTACGATCCTACCTGTGGTGTTGCACCATGGTGGGGTGTTTTCAATTCGACCCGACTTGTCCATGGTGCCATGGAGGTTGCGTCGGGTTCGCGCATCCCAACAGAGTAG

Protein sequence

MMDRYDSACPISSQLDDEFQRWMDDPNSDGIWQSTATGMQKKEWYRNLLDATIELKEEVVDGLVLFTAKKLEKRLHLCRKKFAMGDVLLSAVGPQNALKSCRHGVHPDQRRQEPLGDVRHRSCRRRHNHMGFTPYDHSTECTREGAEAHVYDPTCGVAPWWGVFNSTRLVHGAMEVASGSRIPTE
Homology
[Close]
BLAST of Moc08g18460 vs. NCBI nr
Match: XP_022155476.1 (uncharacterized protein LOC111022607 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-27
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 0 

Query: 2   MDRYDSACPISSQLDDEFQRWMDDPNSDGIWQSTATGMQKKEWYRNLLDATIELKEEVVD 61
           +D YD ACPI  QLD +FQ WMDD + DG  +STA G+Q KEWYR+LLD T++LK+EVVD
Sbjct: 146 VDAYDPACPIPPQLDGQFQTWMDDLDIDGRTRSTAAGLQGKEWYRDLLDPTVQLKDEVVD 205

Query: 62  GLVLFTAKKLEKRLHLCRKKFAMGDVLLSAV-----GPQNALK 100
            LVLFTAKKLEK ++LCRKKFA+GDVLLS +     GP  A+K
Sbjct: 206 ALVLFTAKKLEKCIYLCRKKFAIGDVLLSTLLNRTDGPYAAMK 248

[Close]
BLAST of Moc08g18460 vs. NCBI nr
Match: XP_022158807.1 (uncharacterized protein LOC111025273 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-09
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 0 

Query: 23  MDDPNSDGIWQSTATGMQKKEWYRNLLDATIELKEEVVDGLVLFTAKKLEKRLHLCRKKF 82
           MDDP++D   +ST+ G++ K W+  LLD   +L +E +D L++ TA+K+EK  HL R +F
Sbjct: 1   MDDPSTDDNSRSTSVGIKYKSWFGLLLDPQFQLDDEYIDSLMMLTARKVEKCKHLLRVQF 60

Query: 83  AMGDVLLSAV-----GPQNALK 100
           A+GDVLLS +     GP  A+K
Sbjct: 61  AIGDVLLSNLLRRTDGPYAAMK 82

[Close]
BLAST of Moc08g18460 vs. ExPASy TrEMBL
Match: A0A6J1DRS0 (uncharacterized protein LOC111022607 OS=Momordica charantia OX=3673 GN=LOC111022607 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.1e-28
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 0 

Query: 2   MDRYDSACPISSQLDDEFQRWMDDPNSDGIWQSTATGMQKKEWYRNLLDATIELKEEVVD 61
           +D YD ACPI  QLD +FQ WMDD + DG  +STA G+Q KEWYR+LLD T++LK+EVVD
Sbjct: 146 VDAYDPACPIPPQLDGQFQTWMDDLDIDGRTRSTAAGLQGKEWYRDLLDPTVQLKDEVVD 205

Query: 62  GLVLFTAKKLEKRLHLCRKKFAMGDVLLSAV-----GPQNALK 100
            LVLFTAKKLEK ++LCRKKFA+GDVLLS +     GP  A+K
Sbjct: 206 ALVLFTAKKLEKCIYLCRKKFAIGDVLLSTLLNRTDGPYAAMK 248

[Close]
BLAST of Moc08g18460 vs. ExPASy TrEMBL
Match: A0A6J1DY60 (uncharacterized protein LOC111025273 OS=Momordica charantia OX=3673 GN=LOC111025273 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 0 

Query: 23  MDDPNSDGIWQSTATGMQKKEWYRNLLDATIELKEEVVDGLVLFTAKKLEKRLHLCRKKF 82
           MDDP++D   +ST+ G++ K W+  LLD   +L +E +D L++ TA+K+EK  HL R +F
Sbjct: 1   MDDPSTDDNSRSTSVGIKYKSWFGLLLDPQFQLDDEYIDSLMMLTARKVEKCKHLLRVQF 60

Query: 83  AMGDVLLSAV-----GPQNALK 100
           A+GDVLLS +     GP  A+K
Sbjct: 61  AIGDVLLSNLLRRTDGPYAAMK 82

The following BLAST results are available for this feature:
BLAST of Moc08g18460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155476.11.7e-2764.08uncharacterized protein LOC111022607 [Momordica charantia][more]
XP_022158807.13.5e-0945.12uncharacterized protein LOC111025273 [Momordica charantia][more]
BLAST of Moc08g18460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g18460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DRS08.1e-2864.08uncharacterized protein LOC111022607 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DY601.7e-0945.12uncharacterized protein LOC111025273 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
BLAST of Moc08g18460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g18460.1Moc08g18460.1mRNA