Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAACGTACAGGAGATCATGGACTCGTTGCAGGACATGTTTGGACAGCCGTCCATTCAAGCCCGACACGAATCCCTCAAGTTCATTTACAATTCCCGCATGAAAGAAGGAACATCAGTGCAAGAACATGTTCTCAATCTGATGGTCCACTTTAATGTGGCTGAAGTGAATGTGGTTGTCACAGATGAGGGAAGCCAGGTCAGCTTTATCTTGTAATCTCTTCCGAAGAGTTTCCTACAGTTTCGCAGCAATGCTGTGATGAACAAGATAGAGTACAACCTTACCACGCTCTTGAATGAGCTACAGATTTTTTAGTCTCTTATGAAAAATAAGGTACAAGAAGGGAAGGCAAACGTTGCTACCTCAAATCGGTTCCATCGAGGTTCGACCTCAGGAACAAAATTTGTGCCTTCTTCTAGAAGTATGACTTTCAAGACGAAGAAAAATGGTAAGGGTATAAAAGTTGGCCCTACTGCTATTGCTGCCAAGAAGGGCAAGACCAAAGTTACAAAAGAAAATGTTTCCATTACAATGTTGATGGGTACTGGAAGAGAAACTGCCCAAAATACTTGTCGGAAAAGAAGAAAGCCAAAGAAGGTAAATATGATTTACTTGTTCTTGAAACTTGCTTAGTGGAGAATGATGATTCTGCCTGGATACTGGATTCAGGGGCCACTAACCATGTTTGTTCTTCTTTTCAGGGAATTAGTTCCTAGAAGCAGCTTGATGGTGGGGAGATGA
mRNA sequence
ATGGTCAACGTACAGGAGATCATGGACTCGTTGCAGGACATGTTTGGACAGCCGTCCATTCAAGCCCGACACGAATCCCTCAAGTTCATTTACAATTCCCGCATGAAAGAAGGAACATCAGTGCAAGAACATGTTCTCAATCTGATGGTCCACTTTAATGTGGCTGAAGTGAATGTGGTTGTCACAGATGAGGGAAGCCAGGTACAAGAAGGGAAGGCAAACGTTGCTACCTCAAATCGGTTCCATCGAGGTTCGACCTCAGGAACAAAATTTGTGCCTTCTTCTAGAAGTATGACTTTCAAGACGAAGAAAAATGGTAAGGGTATAAAAGTTGGCCCTACTGCTATTGCTGCCAAGAAGGGCAAGACCAAAGTTACAAAAGAAAATGTTTCCATTACAATGTTGATGGGTACTGGAAGAGAAACTGCCCAAAATACTTGTCGGAAAAGAAGAAAGCCAAAGAAGGGGCCACTAACCATGTTTGTTCTTCTTTTCAGGGAATTAGTTCCTAGAAGCAGCTTGATGGTGGGGAGATGA
Coding sequence (CDS)
ATGGTCAACGTACAGGAGATCATGGACTCGTTGCAGGACATGTTTGGACAGCCGTCCATTCAAGCCCGACACGAATCCCTCAAGTTCATTTACAATTCCCGCATGAAAGAAGGAACATCAGTGCAAGAACATGTTCTCAATCTGATGGTCCACTTTAATGTGGCTGAAGTGAATGTGGTTGTCACAGATGAGGGAAGCCAGGTACAAGAAGGGAAGGCAAACGTTGCTACCTCAAATCGGTTCCATCGAGGTTCGACCTCAGGAACAAAATTTGTGCCTTCTTCTAGAAGTATGACTTTCAAGACGAAGAAAAATGGTAAGGGTATAAAAGTTGGCCCTACTGCTATTGCTGCCAAGAAGGGCAAGACCAAAGTTACAAAAGAAAATGTTTCCATTACAATGTTGATGGGTACTGGAAGAGAAACTGCCCAAAATACTTGTCGGAAAAGAAGAAAGCCAAAGAAGGGGCCACTAACCATGTTTGTTCTTCTTTTCAGGGAATTAGTTCCTAGAAGCAGCTTGATGGTGGGGAGATGA
Protein sequence
MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVVVTDEGSQVQEGKANVATSNRFHRGSTSGTKFVPSSRSMTFKTKKNGKGIKVGPTAIAAKKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKGPLTMFVLLFRELVPRSSLMVGR
Homology
BLAST of Moc08g17920 vs. NCBI nr
Match:
TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 136.3 bits (342), Expect = 2.5e-28
Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 0
Query: 1 MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
M+ +EIMDSLQ+MFGQ S Q H++LK+IYN+RM EG SV+EHVLN+MVHFNVAE+N
Sbjct: 88 MLTAREIMDSLQEMFGQASYQINHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147
Query: 61 VTDEGSQVQEGKANVATSNR-FHRGSTSGTKFVPSSR-SMTFKTKKNGKGIKVGPTAIAA 120
V DE SQ Q+G+ANVATS R FHRGSTSGTK +PSS + +K KK G+G K A
Sbjct: 148 VIDEASQGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKT 207
Query: 121 KKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKGPLTM 161
K K+K TK G + +++K K+G + +
Sbjct: 208 TK-KSKATKGICFHYNQEGHWKRNCPKYLAEKKKAKQGHINL 248
BLAST of Moc08g17920 vs. NCBI nr
Match:
KAA0060254.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 136.3 bits (342), Expect = 2.5e-28
Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 0
Query: 1 MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
M+ +EIMDSLQ+MFGQ S Q H++LK+IYN+RM EG SV+EHVLN+MVHFNVAE+N
Sbjct: 88 MLTAREIMDSLQEMFGQASYQINHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147
Query: 61 VTDEGSQVQEGKANVATSNR-FHRGSTSGTKFVPSSR-SMTFKTKKNGKGIKVGPTAIAA 120
V DE SQ Q+G+ANVATS R FHRGSTSGTK +PSS + +K KK G+G K A
Sbjct: 148 VIDEASQGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKT 207
Query: 121 KKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKGPLTM 161
K K+K TK G + +++K K+G + +
Sbjct: 208 TK-KSKATKGICFHYNQEGHWKRNCPKYLAEKKKAKQGHINL 248
BLAST of Moc08g17920 vs. NCBI nr
Match:
TYJ97005.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 127.1 bits (318), Expect = 1.5e-25
Identity = 84/171 (49.12%), Postives = 105/171 (61.40%), Query Frame = 0
Query: 1 MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
M+ EIMDSLQ+MFGQ S Q +H++LK+IYN+ M +G SVQEHVLN+MVHFNVA++N
Sbjct: 88 MLTAHEIMDSLQEMFGQASYQIKHDALKYIYNACMNKGVSVQEHVLNMMVHFNVAKMNGA 147
Query: 61 VTDEGSQV---------QEGKANVATSNR-FHRGSTSGTKFVPSS-RSMTFKTKKNGKGI 120
V +E SQ Q+GK NVATS R FH+GSTS TKF+P S + +K K +G+G
Sbjct: 148 VINEASQTFESFMKIKGQKGKLNVATSTRKFHKGSTSETKFMPCSFGTKKWKKKNSGQGN 207
Query: 121 KVGPTAIAAKKGKTKVTKE-NVSITMLMGTGRETAQNTCRKRRKPKKGPLT 160
K A A K K K RET +T +KRR P K PLT
Sbjct: 208 KAN-LATAKTSKKVKAAKGICFHCNQERNIERETVPSTWQKRRMPNKDPLT 257
BLAST of Moc08g17920 vs. NCBI nr
Match:
KAA0040457.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK28860.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 122.9 bits (307), Expect = 2.9e-24
Identity = 75/137 (54.74%), Postives = 89/137 (64.96%), Query Frame = 0
Query: 1 MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
M+ +EIMDSLQ+MFGQ S Q +H LK+IYN M EG SV+E+VLN+MVHFN E+N V
Sbjct: 1 MLIAREIMDSLQEMFGQASYQIKHVFLKYIYNVHMNEGASVREYVLNMMVHFNEVEMNEV 60
Query: 61 VTDEGSQV---------QEGKANVATSNR-FHRGSTSGTKFVPSSRSMTFKTKKNGKGIK 120
V DE SQ Q+G+ NVATS R FHR STSGTKFVPS +K KK G+G K
Sbjct: 61 VIDEASQTFESLMKIKRQKGETNVATSTRKFHRDSTSGTKFVPSYGIKKWKKKKGGQGNK 120
Query: 121 VGPTAIAAKKGKTKVTK 128
P A + K K TK
Sbjct: 121 ANPAATKTSR-KAKATK 136
BLAST of Moc08g17920 vs. NCBI nr
Match:
KAA0037371.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 122.5 bits (306), Expect = 3.7e-24
Identity = 80/183 (43.72%), Postives = 105/183 (57.38%), Query Frame = 0
Query: 1 MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
M+ +EIMDSLQ+MFGQ S Q +H++LK+IYN+RM EG SV+EHVLN+M+HFNVAE+
Sbjct: 54 MLTAREIMDSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEA 113
Query: 61 VTDEGSQV----------------------QEGKANVATSNR-FHRGSTSGTKFVPSSR- 120
V DE SQ+ Q+G+ANVATS R FHRGS SG KF+PSS
Sbjct: 114 VIDEASQIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNKFMPSSSG 173
Query: 121 SMTFKTKKNGKGIKVGPTAIAAKKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKG 160
+ +K KK G+G K A K K K K G + +++K K+G
Sbjct: 174 NKKWKKKKGGQGNKANLAAAKTSK-KAKDAKGICFHCNQEGHWKRNCPKYLAEKKKAKQG 233
BLAST of Moc08g17920 vs. ExPASy TrEMBL
Match:
A0A5A7UYX7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00180 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 0
Query: 1 MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
M+ +EIMDSLQ+MFGQ S Q H++LK+IYN+RM EG SV+EHVLN+MVHFNVAE+N
Sbjct: 88 MLTAREIMDSLQEMFGQASYQINHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147
Query: 61 VTDEGSQVQEGKANVATSNR-FHRGSTSGTKFVPSSR-SMTFKTKKNGKGIKVGPTAIAA 120
V DE SQ Q+G+ANVATS R FHRGSTSGTK +PSS + +K KK G+G K A
Sbjct: 148 VIDEASQGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKT 207
Query: 121 KKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKGPLTM 161
K K+K TK G + +++K K+G + +
Sbjct: 208 TK-KSKATKGICFHYNQEGHWKRNCPKYLAEKKKAKQGHINL 248
BLAST of Moc08g17920 vs. ExPASy TrEMBL
Match:
A0A5D3BHG7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G00150 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 0
Query: 1 MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
M+ +EIMDSLQ+MFGQ S Q H++LK+IYN+RM EG SV+EHVLN+MVHFNVAE+N
Sbjct: 88 MLTAREIMDSLQEMFGQASYQINHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147
Query: 61 VTDEGSQVQEGKANVATSNR-FHRGSTSGTKFVPSSR-SMTFKTKKNGKGIKVGPTAIAA 120
V DE SQ Q+G+ANVATS R FHRGSTSGTK +PSS + +K KK G+G K A
Sbjct: 148 VIDEASQGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKT 207
Query: 121 KKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKGPLTM 161
K K+K TK G + +++K K+G + +
Sbjct: 208 TK-KSKATKGICFHYNQEGHWKRNCPKYLAEKKKAKQGHINL 248
BLAST of Moc08g17920 vs. ExPASy TrEMBL
Match:
A0A5D3BEX9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00570 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 7.3e-26
Identity = 84/171 (49.12%), Postives = 105/171 (61.40%), Query Frame = 0
Query: 1 MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
M+ EIMDSLQ+MFGQ S Q +H++LK+IYN+ M +G SVQEHVLN+MVHFNVA++N
Sbjct: 88 MLTAHEIMDSLQEMFGQASYQIKHDALKYIYNACMNKGVSVQEHVLNMMVHFNVAKMNGA 147
Query: 61 VTDEGSQV---------QEGKANVATSNR-FHRGSTSGTKFVPSS-RSMTFKTKKNGKGI 120
V +E SQ Q+GK NVATS R FH+GSTS TKF+P S + +K K +G+G
Sbjct: 148 VINEASQTFESFMKIKGQKGKLNVATSTRKFHKGSTSETKFMPCSFGTKKWKKKNSGQGN 207
Query: 121 KVGPTAIAAKKGKTKVTKE-NVSITMLMGTGRETAQNTCRKRRKPKKGPLT 160
K A A K K K RET +T +KRR P K PLT
Sbjct: 208 KAN-LATAKTSKKVKAAKGICFHCNQERNIERETVPSTWQKRRMPNKDPLT 257
BLAST of Moc08g17920 vs. ExPASy TrEMBL
Match:
A0A5A7TFX0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15860G00010 PE=4 SV=1)
HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24
Identity = 75/137 (54.74%), Postives = 89/137 (64.96%), Query Frame = 0
Query: 1 MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
M+ +EIMDSLQ+MFGQ S Q +H LK+IYN M EG SV+E+VLN+MVHFN E+N V
Sbjct: 1 MLIAREIMDSLQEMFGQASYQIKHVFLKYIYNVHMNEGASVREYVLNMMVHFNEVEMNEV 60
Query: 61 VTDEGSQV---------QEGKANVATSNR-FHRGSTSGTKFVPSSRSMTFKTKKNGKGIK 120
V DE SQ Q+G+ NVATS R FHR STSGTKFVPS +K KK G+G K
Sbjct: 61 VIDEASQTFESLMKIKRQKGETNVATSTRKFHRDSTSGTKFVPSYGIKKWKKKKGGQGNK 120
Query: 121 VGPTAIAAKKGKTKVTK 128
P A + K K TK
Sbjct: 121 ANPAATKTSR-KAKATK 136
BLAST of Moc08g17920 vs. ExPASy TrEMBL
Match:
A0A5A7T706 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00760 PE=4 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 80/183 (43.72%), Postives = 105/183 (57.38%), Query Frame = 0
Query: 1 MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
M+ +EIMDSLQ+MFGQ S Q +H++LK+IYN+RM EG SV+EHVLN+M+HFNVAE+
Sbjct: 54 MLTAREIMDSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEA 113
Query: 61 VTDEGSQV----------------------QEGKANVATSNR-FHRGSTSGTKFVPSSR- 120
V DE SQ+ Q+G+ANVATS R FHRGS SG KF+PSS
Sbjct: 114 VIDEASQIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNKFMPSSSG 173
Query: 121 SMTFKTKKNGKGIKVGPTAIAAKKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKG 160
+ +K KK G+G K A K K K K G + +++K K+G
Sbjct: 174 NKKWKKKKGGQGNKANLAAAKTSK-KAKDAKGICFHCNQEGHWKRNCPKYLAEKKKAKQG 233
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYJ97618.1 | 2.5e-28 | 51.23 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
KAA0060254.1 | 2.5e-28 | 51.23 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
TYJ97005.1 | 1.5e-25 | 49.12 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
KAA0040457.1 | 2.9e-24 | 54.74 | gag/pol protein [Cucumis melo var. makuwa] >TYK28860.1 gag/pol protein [Cucumis ... | [more] |
KAA0037371.1 | 3.7e-24 | 43.72 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UYX7 | 1.2e-28 | 51.23 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00180... | [more] |
A0A5D3BHG7 | 1.2e-28 | 51.23 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G0015... | [more] |
A0A5D3BEX9 | 7.3e-26 | 49.12 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G0057... | [more] |
A0A5A7TFX0 | 1.4e-24 | 54.74 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15860G00... | [more] |
A0A5A7T706 | 1.8e-24 | 43.72 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G0076... | [more] |
Match Name | E-value | Identity | Description | |