Moc08g17920 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g17920
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Locationchr8: 13583741 .. 13584484 (-)
RNA-Seq ExpressionMoc08g17920
SyntenyMoc08g17920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAACGTACAGGAGATCATGGACTCGTTGCAGGACATGTTTGGACAGCCGTCCATTCAAGCCCGACACGAATCCCTCAAGTTCATTTACAATTCCCGCATGAAAGAAGGAACATCAGTGCAAGAACATGTTCTCAATCTGATGGTCCACTTTAATGTGGCTGAAGTGAATGTGGTTGTCACAGATGAGGGAAGCCAGGTCAGCTTTATCTTGTAATCTCTTCCGAAGAGTTTCCTACAGTTTCGCAGCAATGCTGTGATGAACAAGATAGAGTACAACCTTACCACGCTCTTGAATGAGCTACAGATTTTTTAGTCTCTTATGAAAAATAAGGTACAAGAAGGGAAGGCAAACGTTGCTACCTCAAATCGGTTCCATCGAGGTTCGACCTCAGGAACAAAATTTGTGCCTTCTTCTAGAAGTATGACTTTCAAGACGAAGAAAAATGGTAAGGGTATAAAAGTTGGCCCTACTGCTATTGCTGCCAAGAAGGGCAAGACCAAAGTTACAAAAGAAAATGTTTCCATTACAATGTTGATGGGTACTGGAAGAGAAACTGCCCAAAATACTTGTCGGAAAAGAAGAAAGCCAAAGAAGGTAAATATGATTTACTTGTTCTTGAAACTTGCTTAGTGGAGAATGATGATTCTGCCTGGATACTGGATTCAGGGGCCACTAACCATGTTTGTTCTTCTTTTCAGGGAATTAGTTCCTAGAAGCAGCTTGATGGTGGGGAGATGA

mRNA sequence

ATGGTCAACGTACAGGAGATCATGGACTCGTTGCAGGACATGTTTGGACAGCCGTCCATTCAAGCCCGACACGAATCCCTCAAGTTCATTTACAATTCCCGCATGAAAGAAGGAACATCAGTGCAAGAACATGTTCTCAATCTGATGGTCCACTTTAATGTGGCTGAAGTGAATGTGGTTGTCACAGATGAGGGAAGCCAGGTACAAGAAGGGAAGGCAAACGTTGCTACCTCAAATCGGTTCCATCGAGGTTCGACCTCAGGAACAAAATTTGTGCCTTCTTCTAGAAGTATGACTTTCAAGACGAAGAAAAATGGTAAGGGTATAAAAGTTGGCCCTACTGCTATTGCTGCCAAGAAGGGCAAGACCAAAGTTACAAAAGAAAATGTTTCCATTACAATGTTGATGGGTACTGGAAGAGAAACTGCCCAAAATACTTGTCGGAAAAGAAGAAAGCCAAAGAAGGGGCCACTAACCATGTTTGTTCTTCTTTTCAGGGAATTAGTTCCTAGAAGCAGCTTGATGGTGGGGAGATGA

Coding sequence (CDS)

ATGGTCAACGTACAGGAGATCATGGACTCGTTGCAGGACATGTTTGGACAGCCGTCCATTCAAGCCCGACACGAATCCCTCAAGTTCATTTACAATTCCCGCATGAAAGAAGGAACATCAGTGCAAGAACATGTTCTCAATCTGATGGTCCACTTTAATGTGGCTGAAGTGAATGTGGTTGTCACAGATGAGGGAAGCCAGGTACAAGAAGGGAAGGCAAACGTTGCTACCTCAAATCGGTTCCATCGAGGTTCGACCTCAGGAACAAAATTTGTGCCTTCTTCTAGAAGTATGACTTTCAAGACGAAGAAAAATGGTAAGGGTATAAAAGTTGGCCCTACTGCTATTGCTGCCAAGAAGGGCAAGACCAAAGTTACAAAAGAAAATGTTTCCATTACAATGTTGATGGGTACTGGAAGAGAAACTGCCCAAAATACTTGTCGGAAAAGAAGAAAGCCAAAGAAGGGGCCACTAACCATGTTTGTTCTTCTTTTCAGGGAATTAGTTCCTAGAAGCAGCTTGATGGTGGGGAGATGA

Protein sequence

MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVVVTDEGSQVQEGKANVATSNRFHRGSTSGTKFVPSSRSMTFKTKKNGKGIKVGPTAIAAKKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKGPLTMFVLLFRELVPRSSLMVGR
Homology
BLAST of Moc08g17920 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-28
Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 0

Query: 1   MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
           M+  +EIMDSLQ+MFGQ S Q  H++LK+IYN+RM EG SV+EHVLN+MVHFNVAE+N  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQINHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VTDEGSQVQEGKANVATSNR-FHRGSTSGTKFVPSSR-SMTFKTKKNGKGIKVGPTAIAA 120
           V DE SQ Q+G+ANVATS R FHRGSTSGTK +PSS  +  +K KK G+G K    A   
Sbjct: 148 VIDEASQGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKT 207

Query: 121 KKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKGPLTM 161
            K K+K TK         G  +        +++K K+G + +
Sbjct: 208 TK-KSKATKGICFHYNQEGHWKRNCPKYLAEKKKAKQGHINL 248

BLAST of Moc08g17920 vs. NCBI nr
Match: KAA0060254.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-28
Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 0

Query: 1   MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
           M+  +EIMDSLQ+MFGQ S Q  H++LK+IYN+RM EG SV+EHVLN+MVHFNVAE+N  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQINHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VTDEGSQVQEGKANVATSNR-FHRGSTSGTKFVPSSR-SMTFKTKKNGKGIKVGPTAIAA 120
           V DE SQ Q+G+ANVATS R FHRGSTSGTK +PSS  +  +K KK G+G K    A   
Sbjct: 148 VIDEASQGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKT 207

Query: 121 KKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKGPLTM 161
            K K+K TK         G  +        +++K K+G + +
Sbjct: 208 TK-KSKATKGICFHYNQEGHWKRNCPKYLAEKKKAKQGHINL 248

BLAST of Moc08g17920 vs. NCBI nr
Match: TYJ97005.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-25
Identity = 84/171 (49.12%), Postives = 105/171 (61.40%), Query Frame = 0

Query: 1   MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
           M+   EIMDSLQ+MFGQ S Q +H++LK+IYN+ M +G SVQEHVLN+MVHFNVA++N  
Sbjct: 88  MLTAHEIMDSLQEMFGQASYQIKHDALKYIYNACMNKGVSVQEHVLNMMVHFNVAKMNGA 147

Query: 61  VTDEGSQV---------QEGKANVATSNR-FHRGSTSGTKFVPSS-RSMTFKTKKNGKGI 120
           V +E SQ          Q+GK NVATS R FH+GSTS TKF+P S  +  +K K +G+G 
Sbjct: 148 VINEASQTFESFMKIKGQKGKLNVATSTRKFHKGSTSETKFMPCSFGTKKWKKKNSGQGN 207

Query: 121 KVGPTAIAAKKGKTKVTKE-NVSITMLMGTGRETAQNTCRKRRKPKKGPLT 160
           K    A A    K K  K             RET  +T +KRR P K PLT
Sbjct: 208 KAN-LATAKTSKKVKAAKGICFHCNQERNIERETVPSTWQKRRMPNKDPLT 257

BLAST of Moc08g17920 vs. NCBI nr
Match: KAA0040457.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK28860.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-24
Identity = 75/137 (54.74%), Postives = 89/137 (64.96%), Query Frame = 0

Query: 1   MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
           M+  +EIMDSLQ+MFGQ S Q +H  LK+IYN  M EG SV+E+VLN+MVHFN  E+N V
Sbjct: 1   MLIAREIMDSLQEMFGQASYQIKHVFLKYIYNVHMNEGASVREYVLNMMVHFNEVEMNEV 60

Query: 61  VTDEGSQV---------QEGKANVATSNR-FHRGSTSGTKFVPSSRSMTFKTKKNGKGIK 120
           V DE SQ          Q+G+ NVATS R FHR STSGTKFVPS     +K KK G+G K
Sbjct: 61  VIDEASQTFESLMKIKRQKGETNVATSTRKFHRDSTSGTKFVPSYGIKKWKKKKGGQGNK 120

Query: 121 VGPTAIAAKKGKTKVTK 128
             P A    + K K TK
Sbjct: 121 ANPAATKTSR-KAKATK 136

BLAST of Moc08g17920 vs. NCBI nr
Match: KAA0037371.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 3.7e-24
Identity = 80/183 (43.72%), Postives = 105/183 (57.38%), Query Frame = 0

Query: 1   MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
           M+  +EIMDSLQ+MFGQ S Q +H++LK+IYN+RM EG SV+EHVLN+M+HFNVAE+   
Sbjct: 54  MLTAREIMDSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEA 113

Query: 61  VTDEGSQV----------------------QEGKANVATSNR-FHRGSTSGTKFVPSSR- 120
           V DE SQ+                      Q+G+ANVATS R FHRGS SG KF+PSS  
Sbjct: 114 VIDEASQIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNKFMPSSSG 173

Query: 121 SMTFKTKKNGKGIKVGPTAIAAKKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKG 160
           +  +K KK G+G K    A    K K K  K         G  +        +++K K+G
Sbjct: 174 NKKWKKKKGGQGNKANLAAAKTSK-KAKDAKGICFHCNQEGHWKRNCPKYLAEKKKAKQG 233

BLAST of Moc08g17920 vs. ExPASy TrEMBL
Match: A0A5A7UYX7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00180 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 0

Query: 1   MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
           M+  +EIMDSLQ+MFGQ S Q  H++LK+IYN+RM EG SV+EHVLN+MVHFNVAE+N  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQINHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VTDEGSQVQEGKANVATSNR-FHRGSTSGTKFVPSSR-SMTFKTKKNGKGIKVGPTAIAA 120
           V DE SQ Q+G+ANVATS R FHRGSTSGTK +PSS  +  +K KK G+G K    A   
Sbjct: 148 VIDEASQGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKT 207

Query: 121 KKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKGPLTM 161
            K K+K TK         G  +        +++K K+G + +
Sbjct: 208 TK-KSKATKGICFHYNQEGHWKRNCPKYLAEKKKAKQGHINL 248

BLAST of Moc08g17920 vs. ExPASy TrEMBL
Match: A0A5D3BHG7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G00150 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 0

Query: 1   MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
           M+  +EIMDSLQ+MFGQ S Q  H++LK+IYN+RM EG SV+EHVLN+MVHFNVAE+N  
Sbjct: 88  MLTAREIMDSLQEMFGQASYQINHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VTDEGSQVQEGKANVATSNR-FHRGSTSGTKFVPSSR-SMTFKTKKNGKGIKVGPTAIAA 120
           V DE SQ Q+G+ANVATS R FHRGSTSGTK +PSS  +  +K KK G+G K    A   
Sbjct: 148 VIDEASQGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKT 207

Query: 121 KKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKGPLTM 161
            K K+K TK         G  +        +++K K+G + +
Sbjct: 208 TK-KSKATKGICFHYNQEGHWKRNCPKYLAEKKKAKQGHINL 248

BLAST of Moc08g17920 vs. ExPASy TrEMBL
Match: A0A5D3BEX9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00570 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.3e-26
Identity = 84/171 (49.12%), Postives = 105/171 (61.40%), Query Frame = 0

Query: 1   MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
           M+   EIMDSLQ+MFGQ S Q +H++LK+IYN+ M +G SVQEHVLN+MVHFNVA++N  
Sbjct: 88  MLTAHEIMDSLQEMFGQASYQIKHDALKYIYNACMNKGVSVQEHVLNMMVHFNVAKMNGA 147

Query: 61  VTDEGSQV---------QEGKANVATSNR-FHRGSTSGTKFVPSS-RSMTFKTKKNGKGI 120
           V +E SQ          Q+GK NVATS R FH+GSTS TKF+P S  +  +K K +G+G 
Sbjct: 148 VINEASQTFESFMKIKGQKGKLNVATSTRKFHKGSTSETKFMPCSFGTKKWKKKNSGQGN 207

Query: 121 KVGPTAIAAKKGKTKVTKE-NVSITMLMGTGRETAQNTCRKRRKPKKGPLT 160
           K    A A    K K  K             RET  +T +KRR P K PLT
Sbjct: 208 KAN-LATAKTSKKVKAAKGICFHCNQERNIERETVPSTWQKRRMPNKDPLT 257

BLAST of Moc08g17920 vs. ExPASy TrEMBL
Match: A0A5A7TFX0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15860G00010 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24
Identity = 75/137 (54.74%), Postives = 89/137 (64.96%), Query Frame = 0

Query: 1   MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
           M+  +EIMDSLQ+MFGQ S Q +H  LK+IYN  M EG SV+E+VLN+MVHFN  E+N V
Sbjct: 1   MLIAREIMDSLQEMFGQASYQIKHVFLKYIYNVHMNEGASVREYVLNMMVHFNEVEMNEV 60

Query: 61  VTDEGSQV---------QEGKANVATSNR-FHRGSTSGTKFVPSSRSMTFKTKKNGKGIK 120
           V DE SQ          Q+G+ NVATS R FHR STSGTKFVPS     +K KK G+G K
Sbjct: 61  VIDEASQTFESLMKIKRQKGETNVATSTRKFHRDSTSGTKFVPSYGIKKWKKKKGGQGNK 120

Query: 121 VGPTAIAAKKGKTKVTK 128
             P A    + K K TK
Sbjct: 121 ANPAATKTSR-KAKATK 136

BLAST of Moc08g17920 vs. ExPASy TrEMBL
Match: A0A5A7T706 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00760 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 80/183 (43.72%), Postives = 105/183 (57.38%), Query Frame = 0

Query: 1   MVNVQEIMDSLQDMFGQPSIQARHESLKFIYNSRMKEGTSVQEHVLNLMVHFNVAEVNVV 60
           M+  +EIMDSLQ+MFGQ S Q +H++LK+IYN+RM EG SV+EHVLN+M+HFNVAE+   
Sbjct: 54  MLTAREIMDSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEA 113

Query: 61  VTDEGSQV----------------------QEGKANVATSNR-FHRGSTSGTKFVPSSR- 120
           V DE SQ+                      Q+G+ANVATS R FHRGS SG KF+PSS  
Sbjct: 114 VIDEASQIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNKFMPSSSG 173

Query: 121 SMTFKTKKNGKGIKVGPTAIAAKKGKTKVTKENVSITMLMGTGRETAQNTCRKRRKPKKG 160
           +  +K KK G+G K    A    K K K  K         G  +        +++K K+G
Sbjct: 174 NKKWKKKKGGQGNKANLAAAKTSK-KAKDAKGICFHCNQEGHWKRNCPKYLAEKKKAKQG 233

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ97618.12.5e-2851.23gag/pol protein [Cucumis melo var. makuwa][more]
KAA0060254.12.5e-2851.23gag/pol protein [Cucumis melo var. makuwa][more]
TYJ97005.11.5e-2549.12gag/pol protein [Cucumis melo var. makuwa][more]
KAA0040457.12.9e-2454.74gag/pol protein [Cucumis melo var. makuwa] >TYK28860.1 gag/pol protein [Cucumis ... [more]
KAA0037371.13.7e-2443.72gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UYX71.2e-2851.23Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00180... [more]
A0A5D3BHG71.2e-2851.23Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G0015... [more]
A0A5D3BEX97.3e-2649.12Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G0057... [more]
A0A5A7TFX01.4e-2454.74Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15860G00... [more]
A0A5A7T7061.8e-2443.72Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G0076... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g17920.1Moc08g17920.1mRNA