Moc08g17720 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g17720
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Locationchr8: 13435510 .. 13437858 (+)
RNA-Seq ExpressionMoc08g17720
SyntenyMoc08g17720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATGGGATATCAGCCTCCAAAGTTCCAACAATTTGACGAAAAGGGCAATCCTAAGCAACATATTGCTCATTTTGTTGAGACATGTGAAAATGCTGGCACTCGAGGAGATCTACTCATCAAAAAATTCGTCCGAACACTAAAGGGCAATGCTTTTGACTGGTACACAGATCTAGAGCCTGAATCCATCAACGGTTGGGAGCAATTGGAAAGAGAGTTCTTAAATCGCTTCTACAGCACAAGGCGAACCGTAAGCATGATGGAACTCACTAATACTAAGCAACAAAAAGATGAATCTGTTGTTGATTACATCAACCGGTGGAGAGCTTTGAGTCTCGACTGCAAAGATCAACTAATGGAATTATCTGCTATCGAGTTGTGCATTCAAGGTATGCATTGGGGACTTCTCTAATCCTTCAAGGAATAAAACCCCGCACGTTTGAAGAATTAGCAACCCGCGCCCACGACATGGAGCTAAGTATTGCTAATCGAGGAGATAAAGATCTTTTAGTCCCTAACTTAAAGAGAATAAGCAAGAATTCTGAGACGACTCTTGAAGAATCAATGGTTATCAACACAACTTCTCTCAAGTCTTATTCAAAAAGAAAGGATAAGAAGGTCGGAAAACAACAAGAGAATGAAAGACGTTGTCTAACTCTAAAGGATAGACAAGAAAAAGTTTATCCTTTTCCTGATTCTGACATCTCTGACATGTTAGAACAACTACTAAAAATGCAATTGATCGAACTCCCTGAATGCAAACGACCAGAAGACATGGGAAAAGTAAACGATCCAAACTACTGTAAATACCATAGAGTTGTTGGCCATCCAGTGGGGAAATTCTTCGTCTTAAAGGAACTAATTCTAAAGTTAGCTCAAGAAGGAAAAATCGAGCTGGACATTGATGAATTAGCTCAAGCAAATCATATTGGAGTAGCGACAAACACATGCAATCAAATATGCTCAAAGTCATTTCATGGTCAAAATGTGGAAGAATTTGCAACTACACATTACATAAATGTGAAAGAAGTCAACGATTCAAAAGAAATCAAACAAAAGACTTCTATCTTTGATCGCATCAAGCCTTCAACTACTCGAGTTTCAGTCTTCCAAAGAATGAGTATGGTCGCGATGAAAGAAGAAAATCAATGTTTGACTCGACCTTCAGTCTTCCAAAGGTTAAGTGTCTCCACATCAAGAAAAAATCAAGCTTCAACATATACTTTGGATCGTCTTAAAGTGGGGGCAAATGATCGAAACAAAGGAAGGATGAAGATCTTGGAGACGAAAAAATTTGATGGCAAAAGGGTTCACAGCCTTGTTCCTTCACATATGAAGAGAAAATTATCTCTTGTCATAAGTACGGAAAGTTGCTTGAAGGTGAAGCAAAGTCTTGTCATTTCAGTCAATCCTACAAATGAAGGATATGGTCAAAATCATGACATTTGAAATGTAACGCTCCTTATCGCAAGAGCCTAAACTGCACGATACTCCTAGCCCACATGAGTTTAAAAGGTGAACGGTAAAAAAAAAAATTTGCAAATGAACTACGTTATGACTTGATCCCTCTCTTTAAAAGGGTACGTAGGCAACTTAAAGAAAATTCTAAGTTCAGTCCAAGTTCATTAAAACAAAAATCCAAGTTCTAAAAAAAAGGGCGACGCTACAGTGACGCTGCAGGACAAATACGATGTTCAGCTCTATTGTAGGCTAGTTTTGCAGTAGAATGAAGAATGATCACCGAGGGCATACACCATCAAAGTAGTTTTTGCTCCTCATGATAGGTATCATCCCGCAAACTTGAACCCCCTCGATCATTGGCGAAGAAGTTGTACTCGCTCGATTGTCGGCAAAGAAGTTACACCCGCTCGATCATTGGCGAAGAAGTTGCACCCGTTCGATCGTTGGCACTGCACCTACTGGATCATTGGCGAAGACGTTGCACTCGCTCGATCCTTGGCGAAGAAGCTGCACTCGCTCGATCCTTGGTGAAGAAGCTGCACTCGCTCGATCATTGGCGGAGAAGCTGCACTCATTGGATCATTGGCAAAGAAGTTGCACCCGTTTGATTGTTGGCGCTGCACCCATTGGATCATTGGCGAAGACGTTGCACTCGCTCGATCGTTGGCGAAGAAGCTGCACTCGCTCGATCCTTGGCGAAGAAGTTGCACCCACTCGATCGTTGGCGAAGACGTTGCACTCGCTCGATCATTGGCGAAGAAGTTGCACCCGTTTGATCGTTGGCACTGCACCCGCTGGATCATTGGCAAAGACGTTGCACCCGCTGGATCATTGGCGAAGACGTTGCACTCGCTCGATCATTGGCGAAGAAGTTGCACTCGCTTGA

mRNA sequence

ATGCCTATGGGATATCAGCCTCCAAAGTTCCAACAATTTGACGAAAAGGGCAATCCTAAGCAACATATTGCTCATTTTGTTGAGACATGTGAAAATGCTGGCACTCGAGGAGATCTACTCATCAAAAAATTCGTCCGAACACTAAAGGGCAATGCTTTTGACTGGTACACAGATCTAGAGCCTGAATCCATCAACGGTTGGGAGCAATTGGAAAGAGAGTTCTTAAATCGCTTCTACAGCACAAGGCGAACCGTAAGCATGATGGAACTCACTAATACTAAGCAACAAAAAGATGAATCTGTTGTTGATTACATCAACCGGTATGCATTGGGGACTTCTCTAATCCTTCAAGGAATAAAACCCCGCACGTTTGAAGAATTAGCAACCCGCGCCCACGACATGGAGCTAAGTATTGCTAATCGAGGAGATAAAGATCTTTTAGTCCCTAACTTAAAGAGAATAAGCAAGAATTCTGAGACGACTCTTGAAGAATCAATGGTTATCAACACAACTTCTCTCAAGTCTTATTCAAAAAGAAAGGATAAGAAGGTCGGAAAACAACAAGAGAATGAAAGACGTTGTCTAACTCTAAAGGATAGACAAGAAAAAGTTTATCCTTTTCCTGATTCTGACATCTCTGACATGTTAGAACAACTACTAAAAATGCAATTGATCGAACTCCCTGAATGCAAACGACCAGAAGACATGGGAAAAGTAAACGATCCAAACTACTGTAAATACCATAGAGTTGTTGGCCATCCAGTGGGGAAATTCTTCGTCTTAAAGGAACTAATTCTAAAGTTAGCTCAAGAAGGAAAAATCGAGCTGGACATTGATGAATTAGCTCAAGCAAATCATATTGGAGTAGCGACAAACACATGCAATCAAATATGCTCAAAGTCATTTCATGGTCAAAATGTGGAAGAATTTGCAACTACACATTACATAAATGTGAAAGAAGTCAACGATTCAAAAGAAATCAAACAAAAGACTTCTATCTTTGATCGCATCAAGCCTTCAACTACTCGAGTTTCAGTCTTCCAAAGAATGAGTATGGTCGCGATGAAAGAAGAAAATCAATGTTTGACTCGACCTTCAGTCTTCCAAAGGTTAAGTGTCTCCACATCAAGAAAAAATCAAGCTTCAACATATACTTTGGATCGTCTTAAAGTGGGGGCAAATGATCGAAACAAAGGAAGGATGAAGATCTTGGAGACGAAAAAATTTGATGGCAAAAGGGTTCACAGCCTTGTTCCTTCACATATGAAGAGAAAATTATCTCTTGTCATAAAAGTTGTACTCGCTCGATTGTCGGCAAAGAAGTTACACCCGCTCGATCATTGGCGAAGAAGTTGCACCCGTTCGATCGTTGGCACTGCACCTACTGGATCATTGGCGAAGACGTTGCACTCGCTCGATCCTTGGCGAAGAAGCTGCACTCGCTCGATCCTTGGTGAAGAAGCTGCACTCGCTCGATCATTGGCGGAGAAGCTGCACTCATTGGATCATTGGCAAAGAAGTTGCACCCGTTTGATTGTTGGCGCTGCACCCATTGGATCATTGGCGAAGACGTTGCACTCGCTCGATCGTTGGCGAAGAAGCTGCACTCGCTCGATCCTTGGCGAAGAAGTTGCACCCACTCGATCGTTGGCGAAGACGTTGCACTCGCTCGATCATTGGCGAAGAAGTTGCACCCGTTTGATCGTTGGCACTGCACCCGCTGGATCATTGGCAAAGACGTTGCACCCGCTGGATCATTGGCGAAGACGTTGCACTCGCTCGATCATTGGCGAAGAAGTTGCACTCGCTTGA

Coding sequence (CDS)

ATGCCTATGGGATATCAGCCTCCAAAGTTCCAACAATTTGACGAAAAGGGCAATCCTAAGCAACATATTGCTCATTTTGTTGAGACATGTGAAAATGCTGGCACTCGAGGAGATCTACTCATCAAAAAATTCGTCCGAACACTAAAGGGCAATGCTTTTGACTGGTACACAGATCTAGAGCCTGAATCCATCAACGGTTGGGAGCAATTGGAAAGAGAGTTCTTAAATCGCTTCTACAGCACAAGGCGAACCGTAAGCATGATGGAACTCACTAATACTAAGCAACAAAAAGATGAATCTGTTGTTGATTACATCAACCGGTATGCATTGGGGACTTCTCTAATCCTTCAAGGAATAAAACCCCGCACGTTTGAAGAATTAGCAACCCGCGCCCACGACATGGAGCTAAGTATTGCTAATCGAGGAGATAAAGATCTTTTAGTCCCTAACTTAAAGAGAATAAGCAAGAATTCTGAGACGACTCTTGAAGAATCAATGGTTATCAACACAACTTCTCTCAAGTCTTATTCAAAAAGAAAGGATAAGAAGGTCGGAAAACAACAAGAGAATGAAAGACGTTGTCTAACTCTAAAGGATAGACAAGAAAAAGTTTATCCTTTTCCTGATTCTGACATCTCTGACATGTTAGAACAACTACTAAAAATGCAATTGATCGAACTCCCTGAATGCAAACGACCAGAAGACATGGGAAAAGTAAACGATCCAAACTACTGTAAATACCATAGAGTTGTTGGCCATCCAGTGGGGAAATTCTTCGTCTTAAAGGAACTAATTCTAAAGTTAGCTCAAGAAGGAAAAATCGAGCTGGACATTGATGAATTAGCTCAAGCAAATCATATTGGAGTAGCGACAAACACATGCAATCAAATATGCTCAAAGTCATTTCATGGTCAAAATGTGGAAGAATTTGCAACTACACATTACATAAATGTGAAAGAAGTCAACGATTCAAAAGAAATCAAACAAAAGACTTCTATCTTTGATCGCATCAAGCCTTCAACTACTCGAGTTTCAGTCTTCCAAAGAATGAGTATGGTCGCGATGAAAGAAGAAAATCAATGTTTGACTCGACCTTCAGTCTTCCAAAGGTTAAGTGTCTCCACATCAAGAAAAAATCAAGCTTCAACATATACTTTGGATCGTCTTAAAGTGGGGGCAAATGATCGAAACAAAGGAAGGATGAAGATCTTGGAGACGAAAAAATTTGATGGCAAAAGGGTTCACAGCCTTGTTCCTTCACATATGAAGAGAAAATTATCTCTTGTCATAAAAGTTGTACTCGCTCGATTGTCGGCAAAGAAGTTACACCCGCTCGATCATTGGCGAAGAAGTTGCACCCGTTCGATCGTTGGCACTGCACCTACTGGATCATTGGCGAAGACGTTGCACTCGCTCGATCCTTGGCGAAGAAGCTGCACTCGCTCGATCCTTGGTGAAGAAGCTGCACTCGCTCGATCATTGGCGGAGAAGCTGCACTCATTGGATCATTGGCAAAGAAGTTGCACCCGTTTGATTGTTGGCGCTGCACCCATTGGATCATTGGCGAAGACGTTGCACTCGCTCGATCGTTGGCGAAGAAGCTGCACTCGCTCGATCCTTGGCGAAGAAGTTGCACCCACTCGATCGTTGGCGAAGACGTTGCACTCGCTCGATCATTGGCGAAGAAGTTGCACCCGTTTGATCGTTGGCACTGCACCCGCTGGATCATTGGCAAAGACGTTGCACCCGCTGGATCATTGGCGAAGACGTTGCACTCGCTCGATCATTGGCGAAGAAGTTGCACTCGCTTGA

Protein sequence

MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLEPESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYALGTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVPNLKRISKNSETTLEESMVINTTSLKSYSKRKDKKVGKQQENERRCLTLKDRQEKVYPFPDSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILKLAQEGKIELDIDELAQANHIGVATNTCNQICSKSFHGQNVEEFATTHYINVKEVNDSKEIKQKTSIFDRIKPSTTRVSVFQRMSMVAMKEENQCLTRPSVFQRLSVSTSRKNQASTYTLDRLKVGANDRNKGRMKILETKKFDGKRVHSLVPSHMKRKLSLVIKVVLARLSAKKLHPLDHWRRSCTRSIVGTAPTGSLAKTLHSLDPWRRSCTRSILGEEAALARSLAEKLHSLDHWQRSCTRLIVGAAPIGSLAKTLHSLDRWRRSCTRSILGEEVAPTRSLAKTLHSLDHWRRSCTRLIVGTAPAGSLAKTLHPLDHWRRRCTRSIIGEEVALA
Homology
[Close]
BLAST of Moc08g17720 vs. NCBI nr
Match: KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 503.1 bits (1294), Expect = 3.4e-138
Identity = 283/496 (57.06%), Postives = 342/496 (68.95%), Query Frame = 0 

Query: 1   MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFD KGNPKQH+AHF++TCE AGTRGDLL+K+FVRTLKGNA DWY DLE
Sbjct: 202 MPNGYQPPKFQQFDGKGNPKQHVAHFIKTCETAGTRGDLLVKQFVRTLKGNACDWYIDLE 261

Query: 61  PESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYAL---------- 120
           PESI+ WEQLER+FLNRFYSTR  VSMMELTNT+QQK E V+DYINR+            
Sbjct: 262 PESIDNWEQLERDFLNRFYSTRHIVSMMELTNTRQQKGELVIDYINRWRALSLDCKDRLT 321

Query: 121 --------------GTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVP------- 180
                         G   ILQGIKPRTFEELATRAHDMELSIANRG KD L+P       
Sbjct: 322 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGAKDFLIPKSRSDKN 381

Query: 181 NLKRISKNSETTLEESMVINTTSLKSYSKRKDKKVGKQQE-NERRCLTLKDRQEKVYPFP 240
            L    K + + ++ESMV++ T LKS+SKRK+ K+ ++ + +E+R  TLK+RQEKVYPFP
Sbjct: 382 ELDDTKKIANSVIKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFP 441

Query: 241 DSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILKL 300
           DSD++DMLEQLL+ QLI+LPECKRPE  GKV+DPNYCKYHRV+ HPV K FVLKELILKL
Sbjct: 442 DSDVADMLEQLLENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKL 501

Query: 301 AQEGKIELDIDELAQANH-IGVATN----------------TCNQICSKSFHGQNVEEF- 360
           A+E KIELDIDE+AQ NH I + +N                T  +   +SF   + EE  
Sbjct: 502 AREKKIELDIDEVAQTNHAIEMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEIL 561

Query: 361 ------------ATTHYINVKEVNDSKEIKQKTSIFDRIKPSTTRVSVFQRMSMVAMKEE 420
                          +Y + KEVN+S EI Q+TS+FDRIKPSTTR SVFQR+S+   +EE
Sbjct: 562 EVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEE 621

Query: 421 NQC----LTRPSVFQRLSVSTSRKNQASTYTLDRLKVGANDRNKGRMKILETKKF----D 427
           NQC     TR S  +RLS+ST +K++ ST + DRLK+  ND+ +  MK  + K F    D
Sbjct: 622 NQCPTFIYTRTSTSKRLSISTLKKDRPSTSSFDRLKM-TNDQQQREMKSSKAKPFREEND 681

[Close]
BLAST of Moc08g17720 vs. NCBI nr
Match: TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 468.8 bits (1205), Expect = 7.2e-128
Identity = 284/599 (47.41%), Postives = 344/599 (57.43%), Query Frame = 0 

Query: 1   MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFD KGNPKQH+AHF+ETCE AGTRGDLL+K+FVRTLKGNAFD Y DLE
Sbjct: 202 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDLYMDLE 261

Query: 61  PESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYAL---------- 120
           PESI+ WEQLER+FLNRFYSTRR VSMMELTNT+QQK E V+DYINR+            
Sbjct: 262 PESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYINRWRALSLDCKDRLT 321

Query: 121 --------------GTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVP------- 180
                         G   ILQGIKPRTFEELATRAHDMELSI NRG KD L+P       
Sbjct: 322 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIPNRGAKDFLIPKSRSDKN 381

Query: 181 NLKRISKNSETTLEESMVINTTSLKSYSKRKDKKVGKQQE-NERRCLTLKDRQEKVYPFP 240
            L    K + + ++ESMV++ T LKS+SKRK+ K+ ++ + +E+R  TLK+RQEKVYPF 
Sbjct: 382 ELNDTKKIANSVIKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFS 441

Query: 241 DSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILKL 300
           DSD++DMLEQLL+ QLI+LP+CKRP+   KV+DPNYCKYHRV+ HPV K FVLKELILKL
Sbjct: 442 DSDVADMLEQLLENQLIQLPKCKRPKQAEKVDDPNYCKYHRVISHPVEKCFVLKELILKL 501

Query: 301 AQEGKIELDIDELAQANHIGVATN------------------------------------ 360
           A+E KIEL+IDE+AQ NH+ +                                       
Sbjct: 502 AREKKIELNIDEVAQTNHVAIEMTSNVPPLTQLDDQRKSLIQFGTSILFQQRIVTINSQN 561

Query: 361 ------------------------------------------------------------ 420
                                                                       
Sbjct: 562 KEAHGKDDDEGWITVTRQKGRQPNSIQKESQFHQKYAKGSISHKKKGRRNKKMWNPKPIK 621

Query: 421 -------------TCNQICSKSF---HGQNVEEFATTH----------YINVKEVNDSKE 438
                        T  +   +SF   H + + E  T H          Y + KEVN+  E
Sbjct: 622 GKDEDFLQLRRSITLAEFLPRSFLEDHPEEILEVTTCHAASIVEVNNNYGSSKEVNNLNE 681

[Close]
BLAST of Moc08g17720 vs. NCBI nr
Match: TYK18586.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 424.1 bits (1089), Expect = 2.0e-114
Identity = 215/321 (66.98%), Postives = 250/321 (77.88%), Query Frame = 0 

Query: 1   MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFD KGNPKQH+AHF+ETCE AGTRGDLL+K+FVRTLKGNAFDWY DLE
Sbjct: 170 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLE 229

Query: 61  PESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYAL---------- 120
           PESI+ WEQLER+FLNRFYSTRR VSMMELTNT+QQK E V+DYINR+            
Sbjct: 230 PESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYINRWRALSLDCKDRLT 289

Query: 121 --------------GTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVP------- 180
                         G   ILQGIKPRTFEELATRAHDMELSIANRG KD L+P       
Sbjct: 290 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGAKDFLIPKSRSDKN 349

Query: 181 NLKRISKNSETTLEESMVINTTSLKSYSKRKDKKVGKQQE-NERRCLTLKDRQEKVYPFP 240
            L    K + + ++ESMV++ T LKS+SKRK+ K+ ++ + +E+R  TLK+RQEKVYPFP
Sbjct: 350 ELDDTKKIANSVIKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFP 409

Query: 241 DSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILKL 290
           DSD++DMLEQLL+ QLI+LPECKRPE  GKV+DPNYCKYHRV+ HPV K FVLKELILKL
Sbjct: 410 DSDVADMLEQLLENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKL 469

[Close]
BLAST of Moc08g17720 vs. NCBI nr
Match: KAA0055534.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 422.5 bits (1085), Expect = 5.9e-114
Identity = 214/321 (66.67%), Postives = 250/321 (77.88%), Query Frame = 0 

Query: 1   MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFD KGNPKQH+AHF+ETCE AGTRGDLL+K+FVRTLKGNAFDWY DLE
Sbjct: 139 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLE 198

Query: 61  PESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYAL---------- 120
           P+SI+ WEQLER+FLNRFYSTRR VSMMELTNT+QQK E V+DYINR+            
Sbjct: 199 PKSIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYINRWRALSLDYKDRLT 258

Query: 121 --------------GTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVP------- 180
                         G   ILQGIKPRTFEELATRAHDMELSIANRG KD L+P       
Sbjct: 259 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGAKDFLIPKSRSDKN 318

Query: 181 NLKRISKNSETTLEESMVINTTSLKSYSKRKDKKVGKQQE-NERRCLTLKDRQEKVYPFP 240
            L    K + + ++ESMV++ T LKS+SKRK+ ++ ++ + +E+R  TLK+RQEKVYPFP
Sbjct: 319 GLDDTKKIANSVIKESMVVHATPLKSFSKRKETEIERKHDGDEKRQSTLKERQEKVYPFP 378

Query: 241 DSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILKL 290
           DSD++DMLEQLLK QLI+LPECKRPE  GKV+DPNYCKYHRV+ HPV K FVLKELILKL
Sbjct: 379 DSDVADMLEQLLKNQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKL 438

[Close]
BLAST of Moc08g17720 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 7.7e-114
Identity = 217/321 (67.60%), Postives = 254/321 (79.13%), Query Frame = 0 

Query: 1   MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLE 60
           MP+GYQPPKFQQFD KGNPKQH+AHFVETCENAG+RGD L+++FVR+LKGNAF+WYTDLE
Sbjct: 202 MPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLE 261

Query: 61  PESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYAL---------- 120
           PESI  WEQLE+EFLNRFYSTRRTVSMMELTNTKQ+K E V+DYINR+            
Sbjct: 262 PESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDRLT 321

Query: 121 --------------GTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVPNLKRISK 180
                         G   ILQGIKPRTFEELATRAHDMELSIA+RG KD LVP +K+  K
Sbjct: 322 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIASRGTKDFLVPEVKKDKK 381

Query: 181 NS-------ETTLEESMVINTTSLKSYSKRKDKKVGKQQE-NERRCLTLKDRQEKVYPFP 240
                    ++TL+ESMV+NTT LK +SK K+ +V K+ + +ERR LTLK+RQEKVYPFP
Sbjct: 382 EMKGAEKIVKSTLKESMVVNTTPLK-FSKGKEARVEKKDDGSERRRLTLKERQEKVYPFP 441

Query: 241 DSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILKL 290
           DSDI+DMLEQLL+ QLI+LPECKRPE  GKV+DPNYCKYHRV+ HPV K FVLKELIL+L
Sbjct: 442 DSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRL 501

[Close]
BLAST of Moc08g17720 vs. ExPASy TrEMBL
Match: A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 1.7e-138
Identity = 283/496 (57.06%), Postives = 342/496 (68.95%), Query Frame = 0 

Query: 1   MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFD KGNPKQH+AHF++TCE AGTRGDLL+K+FVRTLKGNA DWY DLE
Sbjct: 202 MPNGYQPPKFQQFDGKGNPKQHVAHFIKTCETAGTRGDLLVKQFVRTLKGNACDWYIDLE 261

Query: 61  PESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYAL---------- 120
           PESI+ WEQLER+FLNRFYSTR  VSMMELTNT+QQK E V+DYINR+            
Sbjct: 262 PESIDNWEQLERDFLNRFYSTRHIVSMMELTNTRQQKGELVIDYINRWRALSLDCKDRLT 321

Query: 121 --------------GTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVP------- 180
                         G   ILQGIKPRTFEELATRAHDMELSIANRG KD L+P       
Sbjct: 322 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGAKDFLIPKSRSDKN 381

Query: 181 NLKRISKNSETTLEESMVINTTSLKSYSKRKDKKVGKQQE-NERRCLTLKDRQEKVYPFP 240
            L    K + + ++ESMV++ T LKS+SKRK+ K+ ++ + +E+R  TLK+RQEKVYPFP
Sbjct: 382 ELDDTKKIANSVIKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFP 441

Query: 241 DSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILKL 300
           DSD++DMLEQLL+ QLI+LPECKRPE  GKV+DPNYCKYHRV+ HPV K FVLKELILKL
Sbjct: 442 DSDVADMLEQLLENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKL 501

Query: 301 AQEGKIELDIDELAQANH-IGVATN----------------TCNQICSKSFHGQNVEEF- 360
           A+E KIELDIDE+AQ NH I + +N                T  +   +SF   + EE  
Sbjct: 502 AREKKIELDIDEVAQTNHAIEMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEIL 561

Query: 361 ------------ATTHYINVKEVNDSKEIKQKTSIFDRIKPSTTRVSVFQRMSMVAMKEE 420
                          +Y + KEVN+S EI Q+TS+FDRIKPSTTR SVFQR+S+   +EE
Sbjct: 562 EVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEE 621

Query: 421 NQC----LTRPSVFQRLSVSTSRKNQASTYTLDRLKVGANDRNKGRMKILETKKF----D 427
           NQC     TR S  +RLS+ST +K++ ST + DRLK+  ND+ +  MK  + K F    D
Sbjct: 622 NQCPTFIYTRTSTSKRLSISTLKKDRPSTSSFDRLKM-TNDQQQREMKSSKAKPFREEND 681

[Close]
BLAST of Moc08g17720 vs. ExPASy TrEMBL
Match: A0A5D3BX77 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00570 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 3.5e-128
Identity = 284/599 (47.41%), Postives = 344/599 (57.43%), Query Frame = 0 

Query: 1   MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFD KGNPKQH+AHF+ETCE AGTRGDLL+K+FVRTLKGNAFD Y DLE
Sbjct: 202 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDLYMDLE 261

Query: 61  PESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYAL---------- 120
           PESI+ WEQLER+FLNRFYSTRR VSMMELTNT+QQK E V+DYINR+            
Sbjct: 262 PESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYINRWRALSLDCKDRLT 321

Query: 121 --------------GTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVP------- 180
                         G   ILQGIKPRTFEELATRAHDMELSI NRG KD L+P       
Sbjct: 322 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIPNRGAKDFLIPKSRSDKN 381

Query: 181 NLKRISKNSETTLEESMVINTTSLKSYSKRKDKKVGKQQE-NERRCLTLKDRQEKVYPFP 240
            L    K + + ++ESMV++ T LKS+SKRK+ K+ ++ + +E+R  TLK+RQEKVYPF 
Sbjct: 382 ELNDTKKIANSVIKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFS 441

Query: 241 DSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILKL 300
           DSD++DMLEQLL+ QLI+LP+CKRP+   KV+DPNYCKYHRV+ HPV K FVLKELILKL
Sbjct: 442 DSDVADMLEQLLENQLIQLPKCKRPKQAEKVDDPNYCKYHRVISHPVEKCFVLKELILKL 501

Query: 301 AQEGKIELDIDELAQANHIGVATN------------------------------------ 360
           A+E KIEL+IDE+AQ NH+ +                                       
Sbjct: 502 AREKKIELNIDEVAQTNHVAIEMTSNVPPLTQLDDQRKSLIQFGTSILFQQRIVTINSQN 561

Query: 361 ------------------------------------------------------------ 420
                                                                       
Sbjct: 562 KEAHGKDDDEGWITVTRQKGRQPNSIQKESQFHQKYAKGSISHKKKGRRNKKMWNPKPIK 621

Query: 421 -------------TCNQICSKSF---HGQNVEEFATTH----------YINVKEVNDSKE 438
                        T  +   +SF   H + + E  T H          Y + KEVN+  E
Sbjct: 622 GKDEDFLQLRRSITLAEFLPRSFLEDHPEEILEVTTCHAASIVEVNNNYGSSKEVNNLNE 681

[Close]
BLAST of Moc08g17720 vs. ExPASy TrEMBL
Match: A0A5D3D4X3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001130 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 9.8e-115
Identity = 215/321 (66.98%), Postives = 250/321 (77.88%), Query Frame = 0 

Query: 1   MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFD KGNPKQH+AHF+ETCE AGTRGDLL+K+FVRTLKGNAFDWY DLE
Sbjct: 170 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLE 229

Query: 61  PESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYAL---------- 120
           PESI+ WEQLER+FLNRFYSTRR VSMMELTNT+QQK E V+DYINR+            
Sbjct: 230 PESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYINRWRALSLDCKDRLT 289

Query: 121 --------------GTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVP------- 180
                         G   ILQGIKPRTFEELATRAHDMELSIANRG KD L+P       
Sbjct: 290 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGAKDFLIPKSRSDKN 349

Query: 181 NLKRISKNSETTLEESMVINTTSLKSYSKRKDKKVGKQQE-NERRCLTLKDRQEKVYPFP 240
            L    K + + ++ESMV++ T LKS+SKRK+ K+ ++ + +E+R  TLK+RQEKVYPFP
Sbjct: 350 ELDDTKKIANSVIKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFP 409

Query: 241 DSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILKL 290
           DSD++DMLEQLL+ QLI+LPECKRPE  GKV+DPNYCKYHRV+ HPV K FVLKELILKL
Sbjct: 410 DSDVADMLEQLLENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKL 469

[Close]
BLAST of Moc08g17720 vs. ExPASy TrEMBL
Match: A0A5A7UK68 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00050 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 2.9e-114
Identity = 214/321 (66.67%), Postives = 250/321 (77.88%), Query Frame = 0 

Query: 1   MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFD KGNPKQH+AHF+ETCE AGTRGDLL+K+FVRTLKGNAFDWY DLE
Sbjct: 139 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLE 198

Query: 61  PESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYAL---------- 120
           P+SI+ WEQLER+FLNRFYSTRR VSMMELTNT+QQK E V+DYINR+            
Sbjct: 199 PKSIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYINRWRALSLDYKDRLT 258

Query: 121 --------------GTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVP------- 180
                         G   ILQGIKPRTFEELATRAHDMELSIANRG KD L+P       
Sbjct: 259 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGAKDFLIPKSRSDKN 318

Query: 181 NLKRISKNSETTLEESMVINTTSLKSYSKRKDKKVGKQQE-NERRCLTLKDRQEKVYPFP 240
            L    K + + ++ESMV++ T LKS+SKRK+ ++ ++ + +E+R  TLK+RQEKVYPFP
Sbjct: 319 GLDDTKKIANSVIKESMVVHATPLKSFSKRKETEIERKHDGDEKRQSTLKERQEKVYPFP 378

Query: 241 DSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILKL 290
           DSD++DMLEQLLK QLI+LPECKRPE  GKV+DPNYCKYHRV+ HPV K FVLKELILKL
Sbjct: 379 DSDVADMLEQLLKNQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKL 438

[Close]
BLAST of Moc08g17720 vs. ExPASy TrEMBL
Match: A0A5A7V6U6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001270 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 1.9e-113
Identity = 214/322 (66.46%), Postives = 251/322 (77.95%), Query Frame = 0 

Query: 1   MPMGYQPPKFQQFDEKGNPKQHIAHFVETCENAGTRGDLLIKKFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFD KGNPKQH+AHF+ETCE AGTRGDLL+K+FVRTLKGNAFDWY DLE
Sbjct: 183 MPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYIDLE 242

Query: 61  PESINGWEQLEREFLNRFYSTRRTVSMMELTNTKQQKDESVVDYINRYAL---------- 120
           PESI+ WEQLER+FLNRFYSTRR VSMMELTNT+QQK E V+DYINR+            
Sbjct: 243 PESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYINRWRALSLDCKDRLT 302

Query: 121 --------------GTSLILQGIKPRTFEELATRAHDMELSIANRGDKDLLVPNLKRISK 180
                         G   ILQGIKPRTFEELATRAHDMELSIANRG KD L+P   R  K
Sbjct: 303 ELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGVKDFLIPK-SRSDK 362

Query: 181 N--------SETTLEESMVINTTSLKSYSKRKDKKVGKQQE-NERRCLTLKDRQEKVYPF 240
           N        + + ++ESMV++ T LKS+SKRK+ K+ ++ + +E+R  TLK+RQEKVYPF
Sbjct: 363 NEFDDTKKIANSVIKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPF 422

Query: 241 PDSDISDMLEQLLKMQLIELPECKRPEDMGKVNDPNYCKYHRVVGHPVGKFFVLKELILK 290
           PDSD++DMLEQLL+ QLI+LPECKRPE  GKV+DPNYCKYHRV+ HPV K FVLKELILK
Sbjct: 423 PDSDVADMLEQLLENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILK 482

The following BLAST results are available for this feature:
BLAST of Moc08g17720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056121.13.4e-13857.06ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK03695.17.2e-12847.41retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK18586.12.0e-11466.98ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0055534.15.9e-11466.67ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
XP_031742032.17.7e-11467.60uncharacterized protein LOC116404025 [Cucumis sativus][more]
BLAST of Moc08g17720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g17720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7URH11.7e-13857.06Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BX773.5e-12847.41Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3D4X39.8e-11566.98Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UK682.9e-11466.67Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7V6U61.9e-11366.46Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of Moc08g17720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 44..108
e-value: 1.2E-8
score: 35.1
NoneNo IPR availablePANTHERPTHR33437OS06G0361200 PROTEINcoord: 6..358

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g17720.1Moc08g17720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0003676 nucleic acid binding