Moc08g16810 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g16810
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Girdin-like
Location	chr8: 12892118 .. 12893457 (-)
RNA-Seq Expression	Moc08g16810
Synteny	Moc08g16810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCAATAAGACTCCTACCCAAGAATGGAAAAAGCAAGATCAAGAAACCATCCGTCAATGGTCAGAAAGCGTGCAAGATATTCATGGTGATGCACTATCTGAGAATGTCACCACGCCATTTCAAAGTGTAACGTTCCCAGAAAATCAGTTGGATGTCTTGAGACGATTGTGGGAAGGCTTAAGACCAGATAGAAAGACCCAGTTCATAAAAAAATATGGTTACAAGCTCAGCTTATGTACGTACGAGTCAACTTCTCAGTGTTGAAAGCGTTAGTTCGGCATTGGGATCCAGCCTATAGATGCTTCAATTTTAGCTCAATGGACATAACCCCCACTATTGAGGAATACCACACTCTTCTACAAATACCACTACAAGAGAAAATTGATGTTTATTCCTATGATGATGGGTTTACATTAAAAATGGCAATATCACTGCTTATAGGGAAAATATCTGCCGGTGAAGTTGAAAAGCATGTGAAAAGGAAGGGAGAAAACACATGCTTGCCGATAGAATATATCTTGAGTCTTCAACAGAGGTTCGTTAATGAAGAAAGGAAGGCTATCGCTATTAGCTCTGTGCCTATTCAACTTGATTTTATTCTCTAAAGTTAGTGGGTACGTTGAAGAGCGAGTGGTCAAGCTATTTGTCAGGGTAGAGATGAGAGATAATCTCGTAATACCCATCCTTGCAGAAACCTTTCGAGCACTAAATTTTTACAGATCAAGAGAAGTAGGGATATAGGATGTGTTCAGCTACTACGCATTTGGGTCCTTAGCCATATAAATTGTCCACCAGAGTTCAAGTGTCCTCAGGTCAAATTTTCAAAATCGTGGAATAGATTGCAGAATCCCATCCTTGAATTCAACCAAGGGGAGTGGAGTCAAATCCACCCAGGGAAAGAGAAGTGGAGCACTTTCTTCGCAGGACTAAGACCAGAAGATGTGGAGTGGAGGGCCCGTTGGATGTCAACTAAACCTATGATGTATAGGTGTGGCAAATTTCACTGTTTACCGTTGTTGGGTCCATGGGGATGTATATTTTATGCTCCATTAATGGTGTTGCGCCAGATATGGGTACGGTAGTTTATCCCAGCCACACATGATTTAAGAAACTCTGAATTTGCCTAAGATGTTGGATTTTGTAGAAACAAAATTCAAGAGATCGTAAATGAGTGGAAAGTGATTGTCAGAATTCAAAGTGACAATTACCACGATAATACGTTAGAAGGATACGAACAGTGGCATTCGAATAGGGGAAAAACTGTGGTTCTCCTACCAACCGACAAGGGCAAAGGGAAGCTAGAGGTTCCCACTAGGAGAATTCTTACCGAATGA

mRNA sequence

ATGGGTTCCAATAAGACTCCTACCCAAGAATGGAAAAAGCAAGATCAAGAAACCATCCGTCAATGGTCAGAAAGCGTGCAAGATATTCATGGTGATGCACTATCTGAGAATGTCACCACGCCATTTCAAAGTGTAACGTTCCCAGAAAATCAGTTGGATGTCTTGAGACGATTGTGGGAAGGCTTAAGACCAGATAGAAAGACCCAGTTCATAAAAAAATATGGTTACAAGCTCAGCTTATGGAAAATATCTGCCGGTGAAGTTGAAAAGCATGTGAAAAGGAAGGGAGAAAACACATGCTTGCCGATAGAATATATCTTGAGTCTTCAACAGAGATTGCAGAATCCCATCCTTGAATTCAACCAAGGGGAGTGGAGTCAAATCCACCCAGGGAAAGAGAAGTGGAGCACTTTCTTCGCAGGACTAAGACCAGAAGATGTGGAGTGGAGGGCCCGTTGGATGTCAACTAAACCTATGATGTATAGAAACAAAATTCAAGAGATCGTAAATGAGTGGAAAGTGATTGTCAGAATTCAAAGTGACAATTACCACGATAATACGTTAGAAGGATACGAACAGTGGCATTCGAATAGGGGAAAAACTGTGGTTCTCCTACCAACCGACAAGGGCAAAGGGAAGCTAGAGGTTCCCACTAGGAGAATTCTTACCGAATGA

Coding sequence (CDS)

ATGGGTTCCAATAAGACTCCTACCCAAGAATGGAAAAAGCAAGATCAAGAAACCATCCGTCAATGGTCAGAAAGCGTGCAAGATATTCATGGTGATGCACTATCTGAGAATGTCACCACGCCATTTCAAAGTGTAACGTTCCCAGAAAATCAGTTGGATGTCTTGAGACGATTGTGGGAAGGCTTAAGACCAGATAGAAAGACCCAGTTCATAAAAAAATATGGTTACAAGCTCAGCTTATGGAAAATATCTGCCGGTGAAGTTGAAAAGCATGTGAAAAGGAAGGGAGAAAACACATGCTTGCCGATAGAATATATCTTGAGTCTTCAACAGAGATTGCAGAATCCCATCCTTGAATTCAACCAAGGGGAGTGGAGTCAAATCCACCCAGGGAAAGAGAAGTGGAGCACTTTCTTCGCAGGACTAAGACCAGAAGATGTGGAGTGGAGGGCCCGTTGGATGTCAACTAAACCTATGATGTATAGAAACAAAATTCAAGAGATCGTAAATGAGTGGAAAGTGATTGTCAGAATTCAAAGTGACAATTACCACGATAATACGTTAGAAGGATACGAACAGTGGCATTCGAATAGGGGAAAAACTGTGGTTCTCCTACCAACCGACAAGGGCAAAGGGAAGCTAGAGGTTCCCACTAGGAGAATTCTTACCGAATGA

Protein sequence

MGSNKTPTQEWKKQDQETIRQWSESVQDIHGDALSENVTTPFQSVTFPENQLDVLRRLWEGLRPDRKTQFIKKYGYKLSLWKISAGEVEKHVKRKGENTCLPIEYILSLQQRLQNPILEFNQGEWSQIHPGKEKWSTFFAGLRPEDVEWRARWMSTKPMMYRNKIQEIVNEWKVIVRIQSDNYHDNTLEGYEQWHSNRGKTVVLLPTDKGKGKLEVPTRRILTE

Homology

[Close]

BLAST of Moc08g16810 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 290.8 bits (743), Expect = 1.0e-74
Identity = 181/447 (40.49%), Postives = 199/447 (44.52%), Query Frame = 0


Query: 1   MGSNKTPTQEWKKQDQETIRQWSESVQDIHGDALSENVTTPFQSVTFPENQLDVLRRLWE 60
           M S+K PTQEW+KQDQE + QWSE++Q  HGDALS+NV  PF +VTFPENQLD L+RLWE
Sbjct: 1   MSSSKVPTQEWRKQDQEIVCQWSENMQHTHGDALSQNVIMPFPNVTFPENQLDTLKRLWE 60

Query: 61  GLRPDRKTQFIKKYGY-------------------------------------------- 120
           GLRPDRKTQFIKKYG+                                            
Sbjct: 61  GLRPDRKTQFIKKYGHIAQLLYVRVNFSVLRALVQHWDPPYRCFTFSSMDITPTIEEYHT 120

Query: 121 -------------------------KLSLWKISAGEVEKHVKRKGENTCLPIEYILSLQ- 180
                                     L + KISA E+EKHVKRKGENTCLPIEYI SLQ 
Sbjct: 121 LLQIPLQEKIEVYSYDGGFTLKRAVSLLVGKISAXEIEKHVKRKGENTCLPIEYIXSLQX 180

Query: 181 ------------------------------------------------------------ 225
                                                                       
Sbjct: 181 RFVNEERELSLLALCLFNLVLFPXVSXYVEEXVVKLFVKVEMGVNLVIPILAETFRALNF 240

[Close]

BLAST of Moc08g16810 vs. NCBI nr
Match: XP_022150759.1 (uncharacterized protein LOC111018820 [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 4.7e-48
Identity = 128/309 (41.42%), Postives = 135/309 (43.69%), Query Frame = 0


Query: 70  FIKKYGYKLSLWKISAGEVEKHVKRKGENTCLPIEYILSLQQ------------------ 129
           F  K    L + KISAGE+EKHVKRKGENTCLPIEYILSLQQ                  
Sbjct: 31  FTLKRAVSLLVGKISAGEIEKHVKRKGENTCLPIEYILSLQQRFVNEERELSLLALCLFN 90

Query: 130 ------------------------------------------------------------ 189
                                                                       
Sbjct: 91  LVLFPKVSGYVEERLVKLFVKVEMRVNLVIPILAETFRALNFCRSRGVGKFIGCAQLLYI 150

Query: 190 ------------------------RLQNPILEFNQGEWSQIHPGKEKWSTFFAGLRPEDV 225
                                   RLQNPILEFNQ +WSQIHPGKE+WS FFAGLR EDV
Sbjct: 151 WILSHINCPPEFKCPQVKFSRSWSRLQNPILEFNQADWSQIHPGKEEWSIFFAGLRSEDV 210

[Close]

BLAST of Moc08g16810 vs. NCBI nr
Match: KAA0044912.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-13
Identity = 60/249 (24.10%), Postives = 96/249 (38.55%), Query Frame = 0


Query: 10  EWKKQDQETIRQWSESVQDIHGDALSENVTTPFQS---VTFPENQLDVLRRLWEGLRPDR 69
           E K  +   + +W+E +Q   GD ++ +      S   ++F +N L  L+ +WE L P R
Sbjct: 11  ESKFDEPSDVLKWAEEMQQKFGDGINNSSQISVLSRCQLSFTQNVLANLKMIWEALTPQR 70

Query: 70  KTQFIKKYGYKLSLWKISAGEVEKHVKRKGENTCLPIEYILSLQQRLQNPILEFNQGEWS 129
           +  F KKYG+   L       ++                  S    ++N I EF    W 
Sbjct: 71  RFMFSKKYGHIAELILFRCPRLD----------------FSSPGNLMRNTISEFGMAVWD 130

Query: 130 QIHPGKEKWSTFFAGLRPEDVEWRARWMSTKPMMYR------------------------ 189
           Q +P KE W +FFA L  E+V W+A+WM  K ++YR                        
Sbjct: 131 QTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVL 190

Query: 190 ----------------------------NKIQEIVNEWKVIVRIQSDNYHDNTLEGYEQW 204
                                        K ++ V  WK I +I+   +++    GYE W
Sbjct: 191 RQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAW 243

[Close]

BLAST of Moc08g16810 vs. NCBI nr
Match: KAA0036955.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 7.8e-11
Identity = 40/133 (30.08%), Postives = 65/133 (48.87%), Query Frame = 0


Query: 88  VEKHVKRKGENTCLPIEYILSLQQRLQNPILEFNQGEWSQIHPGKEKWSTFFAGLRPEDV 147
           +  H+K   E  C  +++  S    ++N I EF    W   +P KE W +FFA L  E+V
Sbjct: 44  LSSHIKFPAEFRCPRLDF-SSPWNLMRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENV 103

Query: 148 EWRARWMSTKPMMYR-----------------NKIQEIVNEWKVIVRIQSDNYHDNTLEG 204
            W+A+WM  K ++YR                  K ++ V+ WK I +I+   +++    G
Sbjct: 104 IWKAQWMPLKAVIYRCGDFHSVPLLGPCGDCQGKKRQAVSAWKSIRKIKDKGHYEGVTSG 163

[Close]

BLAST of Moc08g16810 vs. NCBI nr
Match: TYK27808.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-09
Identity = 42/149 (28.19%), Postives = 70/149 (46.98%), Query Frame = 0


Query: 88  VEKHVKRKGENTCLPIEYILSLQQRLQNPILEFNQGEWSQIHPGKEKWSTFFAGLRPEDV 147
           +  H+K   E  C  +++  S    ++N I EF    W   +P KE W +FFA L  E+V
Sbjct: 44  LSSHIKFPAEFKCPRLDF-SSPWNLMRNTISEFGVAVWDPTYPRKEVWLSFFAKLTSENV 103

Query: 148 EWRARWMSTK----------------------PMMYRNKIQEIVNEWKVIVRIQSDNYHD 207
            W+A+WMS K                      P  ++ K ++ V  WK + +I+   +++
Sbjct: 104 IWKAQWMSLKAVWLKQFIPPTHNLQESDFSYDPEDFQGKKRQAVCAWKSVRKIKDKGHYE 163

Query: 208 NTLEGYEQWHSNRGKTVVLLPTD-KGKGK 214
               GYE W +NR K ++ +  +  G+GK
Sbjct: 164 GVTSGYEAWQTNRRKNIIDISREVVGRGK 191

[Close]

BLAST of Moc08g16810 vs. ExPASy TrEMBL
Match: A0A6J1CZG4 (uncharacterized protein LOC111016201 OS=Momordica charantia OX=3673 GN=LOC111016201 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.8e-75
Identity = 181/447 (40.49%), Postives = 199/447 (44.52%), Query Frame = 0


Query: 1   MGSNKTPTQEWKKQDQETIRQWSESVQDIHGDALSENVTTPFQSVTFPENQLDVLRRLWE 60
           M S+K PTQEW+KQDQE + QWSE++Q  HGDALS+NV  PF +VTFPENQLD L+RLWE
Sbjct: 1   MSSSKVPTQEWRKQDQEIVCQWSENMQHTHGDALSQNVIMPFPNVTFPENQLDTLKRLWE 60

Query: 61  GLRPDRKTQFIKKYGY-------------------------------------------- 120
           GLRPDRKTQFIKKYG+                                            
Sbjct: 61  GLRPDRKTQFIKKYGHIAQLLYVRVNFSVLRALVQHWDPPYRCFTFSSMDITPTIEEYHT 120

Query: 121 -------------------------KLSLWKISAGEVEKHVKRKGENTCLPIEYILSLQ- 180
                                     L + KISA E+EKHVKRKGENTCLPIEYI SLQ 
Sbjct: 121 LLQIPLQEKIEVYSYDGGFTLKRAVSLLVGKISAXEIEKHVKRKGENTCLPIEYIXSLQX 180

Query: 181 ------------------------------------------------------------ 225
                                                                       
Sbjct: 181 RFVNEERELSLLALCLFNLVLFPXVSXYVEEXVVKLFVKVEMGVNLVIPILAETFRALNF 240

[Close]

BLAST of Moc08g16810 vs. ExPASy TrEMBL
Match: A0A6J1DB13 (uncharacterized protein LOC111018820 OS=Momordica charantia OX=3673 GN=LOC111018820 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.3e-48
Identity = 128/309 (41.42%), Postives = 135/309 (43.69%), Query Frame = 0


Query: 70  FIKKYGYKLSLWKISAGEVEKHVKRKGENTCLPIEYILSLQQ------------------ 129
           F  K    L + KISAGE+EKHVKRKGENTCLPIEYILSLQQ                  
Sbjct: 31  FTLKRAVSLLVGKISAGEIEKHVKRKGENTCLPIEYILSLQQRFVNEERELSLLALCLFN 90

Query: 130 ------------------------------------------------------------ 189
                                                                       
Sbjct: 91  LVLFPKVSGYVEERLVKLFVKVEMRVNLVIPILAETFRALNFCRSRGVGKFIGCAQLLYI 150

Query: 190 ------------------------RLQNPILEFNQGEWSQIHPGKEKWSTFFAGLRPEDV 225
                                   RLQNPILEFNQ +WSQIHPGKE+WS FFAGLR EDV
Sbjct: 151 WILSHINCPPEFKCPQVKFSRSWSRLQNPILEFNQADWSQIHPGKEEWSIFFAGLRSEDV 210

[Close]

BLAST of Moc08g16810 vs. ExPASy TrEMBL
Match: A0A5A7TNJ1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 60/249 (24.10%), Postives = 96/249 (38.55%), Query Frame = 0


Query: 10  EWKKQDQETIRQWSESVQDIHGDALSENVTTPFQS---VTFPENQLDVLRRLWEGLRPDR 69
           E K  +   + +W+E +Q   GD ++ +      S   ++F +N L  L+ +WE L P R
Sbjct: 11  ESKFDEPSDVLKWAEEMQQKFGDGINNSSQISVLSRCQLSFTQNVLANLKMIWEALTPQR 70

Query: 70  KTQFIKKYGYKLSLWKISAGEVEKHVKRKGENTCLPIEYILSLQQRLQNPILEFNQGEWS 129
           +  F KKYG+   L       ++                  S    ++N I EF    W 
Sbjct: 71  RFMFSKKYGHIAELILFRCPRLD----------------FSSPGNLMRNTISEFGMAVWD 130

Query: 130 QIHPGKEKWSTFFAGLRPEDVEWRARWMSTKPMMYR------------------------ 189
           Q +P KE W +FFA L  E+V W+A+WM  K ++YR                        
Sbjct: 131 QTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVL 190

Query: 190 ----------------------------NKIQEIVNEWKVIVRIQSDNYHDNTLEGYEQW 204
                                        K ++ V  WK I +I+   +++    GYE W
Sbjct: 191 RQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAW 243

[Close]

BLAST of Moc08g16810 vs. ExPASy TrEMBL
Match: A0A5A7T642 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00350 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-11
Identity = 40/133 (30.08%), Postives = 65/133 (48.87%), Query Frame = 0


Query: 88  VEKHVKRKGENTCLPIEYILSLQQRLQNPILEFNQGEWSQIHPGKEKWSTFFAGLRPEDV 147
           +  H+K   E  C  +++  S    ++N I EF    W   +P KE W +FFA L  E+V
Sbjct: 44  LSSHIKFPAEFRCPRLDF-SSPWNLMRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENV 103

Query: 148 EWRARWMSTKPMMYR-----------------NKIQEIVNEWKVIVRIQSDNYHDNTLEG 204
            W+A+WM  K ++YR                  K ++ V+ WK I +I+   +++    G
Sbjct: 104 IWKAQWMPLKAVIYRCGDFHSVPLLGPCGDCQGKKRQAVSAWKSIRKIKDKGHYEGVTSG 163

[Close]

BLAST of Moc08g16810 vs. ExPASy TrEMBL
Match: A0A5A7SMK0 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001920 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.3e-10
Identity = 42/149 (28.19%), Postives = 70/149 (46.98%), Query Frame = 0


Query: 88  VEKHVKRKGENTCLPIEYILSLQQRLQNPILEFNQGEWSQIHPGKEKWSTFFAGLRPEDV 147
           +  H+K   E  C  +++  S    ++N I EF    W   +P KE W +FFA L  E+V
Sbjct: 44  LSSHIKFPAEFKCPRLDF-SSPWNLMRNTISEFGVAVWDPTYPRKEVWLSFFAKLTSENV 103

Query: 148 EWRARWMSTK----------------------PMMYRNKIQEIVNEWKVIVRIQSDNYHD 207
            W+A+WMS K                      P  ++ K ++ V  WK + +I+   +++
Sbjct: 104 IWKAQWMSLKAVWLKQFIPPTHNLQESDFSYDPEDFQGKKRQAVCAWKSVRKIKDKGHYE 163

Query: 208 NTLEGYEQWHSNRGKTVVLLPTD-KGKGK 214
               GYE W +NR K ++ +  +  G+GK
Sbjct: 164 GVTSGYEAWQTNRRKNIIDISREVVGRGK 191

The following BLAST results are available for this feature:

BLAST of Moc08g16810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147190.1	1.0e-74	40.49	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
XP_022150759.1	4.7e-48	41.42	uncharacterized protein LOC111018820 [Momordica charantia]	[more]
KAA0044912.1	2.2e-13	24.10	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036955.1	7.8e-11	30.08	girdin-like [Cucumis melo var. makuwa]	[more]
TYK27808.1	1.9e-09	28.19	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of Moc08g16810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g16810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZG4	4.8e-75	40.49	uncharacterized protein LOC111016201 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DB13	2.3e-48	41.42	uncharacterized protein LOC111018820 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5A7TNJ1	1.1e-13	24.10	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE...	[more]
A0A5A7T642	3.8e-11	30.08	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00350 PE=...	[more]
A0A5A7SMK0	9.3e-10	28.19	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001920 PE...	[more]

BLAST of Moc08g16810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g16810.1	Moc08g16810.1	mRNA