Moc08g16790 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g16790
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr8: 12886812 .. 12887168 (+)
RNA-Seq Expression	Moc08g16790
Synteny	Moc08g16790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGACCCAGACGTAATGGAAACAATGTTTGGGCATCGATCAGGGTACATTAAAAGCGTTGGTTGGAGCCCAAAACCTAAATCTCGTAAAAGTTCTACTTCAAGTGTAGCTTCTTCACGGCGGGAACAAGAGCTTTCTGAAGAAATACATACCCTAAGAGAAGAATTTGAGGAGCTTCTCTCACAGAAAGACAAAGAATTTGAGGAGCGTCTCTCTCAGAAAGACAAAGAATTAAATGAGCGTCTCTCACAAAAATATTCTGAGATTACGAGTCTAAGCGATGGAATGTTAGATTTGAGATCAATGATGCTAGAATTTATGACTCGTTCTGGTGGAGCCAGCTTATCAAAATAG

mRNA sequence

ATGTCAGACCCAGACGTAATGGAAACAATGTTTGGGCATCGATCAGGGTACATTAAAAGCGTTGGTTGGAGCCCAAAACCTAAATCTCGTAAAAGTTCTACTTCAAGTGTAGCTTCTTCACGGCGGGAACAAGAGCTTTCTGAAGAAATACATACCCTAAGAGAAGAATTTGAGGAGCTTCTCTCACAGAAAGACAAAGAATTTGAGGAGCGTCTCTCTCAGAAAGACAAAGAATTAAATGAGCGTCTCTCACAAAAATATTCTGAGATTACGAGTCTAAGCGATGGAATGTTAGATTTGAGATCAATGATGCTAGAATTTATGACTCGTTCTGGTGGAGCCAGCTTATCAAAATAG

Coding sequence (CDS)

ATGTCAGACCCAGACGTAATGGAAACAATGTTTGGGCATCGATCAGGGTACATTAAAAGCGTTGGTTGGAGCCCAAAACCTAAATCTCGTAAAAGTTCTACTTCAAGTGTAGCTTCTTCACGGCGGGAACAAGAGCTTTCTGAAGAAATACATACCCTAAGAGAAGAATTTGAGGAGCTTCTCTCACAGAAAGACAAAGAATTTGAGGAGCGTCTCTCTCAGAAAGACAAAGAATTAAATGAGCGTCTCTCACAAAAATATTCTGAGATTACGAGTCTAAGCGATGGAATGTTAGATTTGAGATCAATGATGCTAGAATTTATGACTCGTTCTGGTGGAGCCAGCTTATCAAAATAG

Protein sequence

MSDPDVMETMFGHRSGYIKSVGWSPKPKSRKSSTSSVASSRREQELSEEIHTLREEFEELLSQKDKEFEERLSQKDKELNERLSQKYSEITSLSDGMLDLRSMMLEFMTRSGGASLSK

Homology

[Close]

BLAST of Moc08g16790 vs. NCBI nr
Match: KAA0066277.1 (hypothetical protein E6C27_scaffold21G003260 [Cucumis melo var. makuwa] >TYJ97651.1 hypothetical protein E5676_scaffold37G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 6.3e-04
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 5   DVMETMFGHRSGYIKSVGWSPKPKSRKSSTSSVASSRREQELSEEIHTLREEFE 59
           D+ E  FG RSGY+K +GW PKPKSRKS+TSS +SS  E   S EI  L+   E
Sbjct: 80  DICEIFFGRRSGYLKGLGWGPKPKSRKSTTSSYSSSYHEMR-SREISKLKASLE 132

[Close]

BLAST of Moc08g16790 vs. ExPASy TrEMBL
Match: A0A5D3BG89 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00090 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 5   DVMETMFGHRSGYIKSVGWSPKPKSRKSSTSSVASSRREQELSEEIHTLREEFE 59
           D+ E  FG RSGY+K +GW PKPKSRKS+TSS +SS  E   S EI  L+   E
Sbjct: 80  DICEIFFGRRSGYLKGLGWGPKPKSRKSTTSSYSSSYHEMR-SREISKLKASLE 132

The following BLAST results are available for this feature:

BLAST of Moc08g16790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066277.1	6.3e-04	55.56	hypothetical protein E6C27_scaffold21G003260 [Cucumis melo var. makuwa] >TYJ9765...	[more]

BLAST of Moc08g16790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g16790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BG89	3.1e-04	55.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Moc08g16790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g16790.1	Moc08g16790.1	mRNA