Moc08g16580 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g16580
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr8: 12722019 .. 12722911 (-)
RNA-Seq Expression	Moc08g16580
Synteny	Moc08g16580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTCCGGATCAACAGGGAGATAAGATGGCCGCCTTAGAAGATAAGGTAAAGGGAATACACCGGAGCATGTCCTTGCTTCTGCAAAAACTTGAGCAACATGAGGCAGAACAACCAGCGCTTGCTCGCGATCCACGAAAGGATAAAGCCTCGATGATTGAAGGAATTAGGGAGACAACCAACTATGCATGGATCAAGCTGAAGATAGGAGGAAACGACAAACCCCGAACCAACATCCTCAGCCGGTTGGGGCGGCAAGTAGATGTATGACAACTGAGGTCTGTCGCGCCCAACAAAAAAGATCATCCGGTCGAAACGTGCGATCAGAGATACAATCAAGAGGACACCAGGACAAGAAATTTGGTCTCGATGAGCTGATAGACTAAGTAGACTCTCCCTTTACGGAGAAAATAATGAAGGAAAAAGTTCCTTCAAAGTTCAAGCTACCTAGCATCACACAATACGACGGTTTGACAGATCCCATCGATCACCTCGATGCATATCGAGAATGGACAGATATTTACGGCATAACAGAAGCCATTAGATGTAGAGTGTTTCCTTTCACTCTAACTGACTTGGCGCACATCTGGTTCTGACAGTTGAAAAGAAAGTCGATCTCAAGCATCAAGGAATTGGCGAGGACATTTGTTACCCAATTCGTCGGAGGACAGATTAGAAGCAAACAGGTAACATACCTACTGACTATCAAGCAAAAGGCGATAGAAAGCCTCAAAGACTATGTGGCTCGGTTCAATGAAGAGAAGCTACAAGTGGAGGGTCTGACAGATGCAGTGGCACTACTAGCCTTTGTATCCGGTGTGAAAGATGAACGATTAGTATTCTCTTTTGGGAAGAAGACTCCAGGCACTTTCTCGGAGGCTTTAAGCTGA

mRNA sequence

ATGGAAGGTCCGGATCAACAGGGAGATAAGATGGCCGCCTTAGAAGATAAGGTAAAGGGAATACACCGGAGCATGTCCTTGCTTCTGCAAAAACTTGAGCAACATGAGGCAGAACAACCAGCGCTTGCTCGCGATCCACGAAAGGATAAAGCCTCGATGATTGAAGGAATTAGGGAGACAACCAACTATGCATGGATCAAGCTGAAGATAGGAGGAAACGACAAACCCCGAACCAACATCCTCAGCCGGTTGGGGCGGCAAGTAGATTTGAAAAGAAAGTCGATCTCAAGCATCAAGGAATTGGCGAGGACATTTGTTACCCAATTCGTCGGAGGACAGATTAGAAGCAAACAGGTAACATACCTACTGACTATCAAGCAAAAGGCGATAGAAAGCCTCAAAGACTATGTGGCTCGGTTCAATGAAGAGAAGCTACAAGTGGAGGGTCTGACAGATGCAGTGGCACTACTAGCCTTTGTATCCGGTGTGAAAGATGAACGATTAGTATTCTCTTTTGGGAAGAAGACTCCAGGCACTTTCTCGGAGGCTTTAAGCTGA

Coding sequence (CDS)

ATGGAAGGTCCGGATCAACAGGGAGATAAGATGGCCGCCTTAGAAGATAAGGTAAAGGGAATACACCGGAGCATGTCCTTGCTTCTGCAAAAACTTGAGCAACATGAGGCAGAACAACCAGCGCTTGCTCGCGATCCACGAAAGGATAAAGCCTCGATGATTGAAGGAATTAGGGAGACAACCAACTATGCATGGATCAAGCTGAAGATAGGAGGAAACGACAAACCCCGAACCAACATCCTCAGCCGGTTGGGGCGGCAAGTAGATTTGAAAAGAAAGTCGATCTCAAGCATCAAGGAATTGGCGAGGACATTTGTTACCCAATTCGTCGGAGGACAGATTAGAAGCAAACAGGTAACATACCTACTGACTATCAAGCAAAAGGCGATAGAAAGCCTCAAAGACTATGTGGCTCGGTTCAATGAAGAGAAGCTACAAGTGGAGGGTCTGACAGATGCAGTGGCACTACTAGCCTTTGTATCCGGTGTGAAAGATGAACGATTAGTATTCTCTTTTGGGAAGAAGACTCCAGGCACTTTCTCGGAGGCTTTAAGCTGA

Protein sequence

MEGPDQQGDKMAALEDKVKGIHRSMSLLLQKLEQHEAEQPALARDPRKDKASMIEGIRETTNYAWIKLKIGGNDKPRTNILSRLGRQVDLKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEGLTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS

Homology

[Close]

BLAST of Moc08g16580 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 5.8e-36
Identity = 83/96 (86.46%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 90  LKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEG 149
           LKR SISS KELA  FVTQFVGG+++SK VTYLLTIKQKA ESLK+YVARFNEEKLQVEG
Sbjct: 63  LKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQVEG 122

Query: 150 LTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS 186
           LTDAVAL+AFVSGVKDERLVFSFGK+TPGTF EALS
Sbjct: 123 LTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALS 158

[Close]

BLAST of Moc08g16580 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 151.0 bits (380), Expect = 1.0e-32
Identity = 79/96 (82.29%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 90  LKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEG 149
           LKRKSISS KELAR FVTQF GG  RS+ V YLLTIKQKA ESLKDYVARFN+EKLQVEG
Sbjct: 63  LKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQKATESLKDYVARFNKEKLQVEG 122

Query: 150 LTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS 186
           LTDAV LL F+SGVKDE+LVFSFGK+T GTFSEA S
Sbjct: 123 LTDAVVLLVFISGVKDEQLVFSFGKRTSGTFSEARS 158

[Close]

BLAST of Moc08g16580 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 8.6e-32
Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 90  LKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEG 149
           LKR SISS K LAR FVTQFVGG+ RS+ V YLLTIKQ+  ESL+DYVARFNEEKLQVEG
Sbjct: 247 LKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEG 306

Query: 150 LTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS 186
           LTDAV+LLAF+SGV+DE L FSFGK+TP TFSEALS
Sbjct: 307 LTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALS 342

[Close]

BLAST of Moc08g16580 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 6.2e-30
Identity = 72/96 (75.00%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 90  LKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEG 149
           LKR SISS K LA+ FVTQF+GG+ RS+ V YLLTIKQ+A ESL DYVARFNEEKLQVEG
Sbjct: 67  LKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYVARFNEEKLQVEG 126

Query: 150 LTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS 186
           LT+AV+L+AF+S ++DE L FSFGKKTP TFSEALS
Sbjct: 127 LTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALS 162

[Close]

BLAST of Moc08g16580 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 8.1e-30
Identity = 73/96 (76.04%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 90  LKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEG 149
           LKR SISS K LAR F+TQFVGG+ RS+ V YLLTIKQ+  ESL DYVARFNEEKLQ+EG
Sbjct: 152 LKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNEEKLQLEG 211

Query: 150 LTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS 186
           LTDAV+LLAF+SGV+DE L FSF K+TP TFSEALS
Sbjct: 212 LTDAVSLLAFMSGVRDEHLSFSFEKRTPSTFSEALS 247

[Close]

BLAST of Moc08g16580 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.8e-36
Identity = 83/96 (86.46%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 90  LKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEG 149
           LKR SISS KELA  FVTQFVGG+++SK VTYLLTIKQKA ESLK+YVARFNEEKLQVEG
Sbjct: 63  LKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQVEG 122

Query: 150 LTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS 186
           LTDAVAL+AFVSGVKDERLVFSFGK+TPGTF EALS
Sbjct: 123 LTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALS 158

[Close]

BLAST of Moc08g16580 vs. ExPASy TrEMBL
Match: A0A6J1D3B7 (uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016619 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 4.9e-33
Identity = 79/96 (82.29%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 90  LKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEG 149
           LKRKSISS KELAR FVTQF GG  RS+ V YLLTIKQKA ESLKDYVARFN+EKLQVEG
Sbjct: 63  LKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQKATESLKDYVARFNKEKLQVEG 122

Query: 150 LTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS 186
           LTDAV LL F+SGVKDE+LVFSFGK+T GTFSEA S
Sbjct: 123 LTDAVVLLVFISGVKDEQLVFSFGKRTSGTFSEARS 158

[Close]

BLAST of Moc08g16580 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.2e-32
Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 90  LKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEG 149
           LKR SISS K LAR FVTQFVGG+ RS+ V YLLTIKQ+  ESL+DYVARFNEEKLQVEG
Sbjct: 247 LKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEG 306

Query: 150 LTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS 186
           LTDAV+LLAF+SGV+DE L FSFGK+TP TFSEALS
Sbjct: 307 LTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALS 342

[Close]

BLAST of Moc08g16580 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.0e-30
Identity = 72/96 (75.00%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 90  LKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEG 149
           LKR SISS K LA+ FVTQF+GG+ RS+ V YLLTIKQ+A ESL DYVARFNEEKLQVEG
Sbjct: 67  LKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYVARFNEEKLQVEG 126

Query: 150 LTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS 186
           LT+AV+L+AF+S ++DE L FSFGKKTP TFSEALS
Sbjct: 127 LTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALS 162

[Close]

BLAST of Moc08g16580 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.9e-30
Identity = 73/96 (76.04%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 90  LKRKSISSIKELARTFVTQFVGGQIRSKQVTYLLTIKQKAIESLKDYVARFNEEKLQVEG 149
           LKR SISS K LAR F+TQFVGG+ RS+ V YLLTIKQ+  ESL DYVARFNEEKLQ+EG
Sbjct: 152 LKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNEEKLQLEG 211

Query: 150 LTDAVALLAFVSGVKDERLVFSFGKKTPGTFSEALS 186
           LTDAV+LLAF+SGV+DE L FSF K+TP TFSEALS
Sbjct: 212 LTDAVSLLAFMSGVRDEHLSFSFEKRTPSTFSEALS 247

The following BLAST results are available for this feature:

BLAST of Moc08g16580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158344.1	5.8e-36	86.46	uncharacterized protein LOC111024851 [Momordica charantia]	[more]
XP_022147761.1	1.0e-32	82.29	uncharacterized protein LOC111016619 [Momordica charantia]	[more]
XP_022158830.1	8.6e-32	79.17	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022150035.1	6.2e-30	75.00	uncharacterized protein LOC111018307 [Momordica charantia]	[more]
XP_022159109.1	8.1e-30	76.04	uncharacterized protein LOC111025548 [Momordica charantia]	[more]

BLAST of Moc08g16580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g16580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZ49	2.8e-36	86.46	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D3B7	4.9e-33	82.29	uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DWY0	4.2e-32	79.17	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1D7D2	3.0e-30	75.00	uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1E1E7	3.9e-30	76.04	uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Moc08g16580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 91..165 e-value: 1.5E-5 score: 25.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g16580.1	Moc08g16580.1	mRNA