Moc08g14230 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g14230
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr8: 10801526 .. 10802770 (+)
RNA-Seq ExpressionMoc08g14230
SyntenyMoc08g14230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATCGGCGCTCCAGAATCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAACTCACCACAAAACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGAGTAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCAGCGCGACTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAAAGGGCCTGTACGTCCTCAGAGAGATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCGACAATTGCCAACGCTACGGAACCATAATCCACCAACCCCCCGAGCTGCTCACCCCCATCTCGGCCCCGTGGTCATTCGCACAGTGGGGGGTAGATATCATTGGTCCTTTCCCTTTGGGCAAGGGCCAGACCAAGTTCGCTGTGGTTGCTGTGGATTACTTCACCAAGTGGGCCGAGGCCGATGCGCTCTCCCACATAACGGAATCCAGAGTCACGTCCTTCGTATGGACAAATATCATATGTCGCTTTGGTATACCGCAGGTCATTGTGACAGACAATGGGAAGCAGTTTGACAACGCCAAGTTCAAAGACTTTTGCAGCAAGCTTGGCATAAGTCACCTTAGCTCGTCCTCCGCACATCCGCAAGCAAATGGGCAGGTGGAGGCAGTCAACAAGATCATCAAGCGTGGCATCAAACTTAGATTGGACTCTAAGAAAGGCAGGTGGGCCGAGGAGCTACCAGAGGTTCTATGGTCGTACCGGACCACCCAAAGAGAATCGACGGGTGAGACCCCGTTCTCCCTGGCCTTCGGCTCCGAAGCCGTAGTCCCAGTTGAGATCGGCATGCCATCTGACAGAGTAGAGCATTACGAGCCTACGACAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTAGTCTTAAGGAGGGTCCAAACACACGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAATCCGACCTGGGACGTACGTATTGGGCGATCTGCAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGGGCACCTGAAGCGTTATTATCCTTGA

mRNA sequence

ATGGAGATCGGCGCTCCAGAATCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAACTCACCACAAAACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGAGTAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCAGCGCGACTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAAAGGGCCTAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTAGTCTTAAGGAGGGTCCAAACACACGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAATCCGACCTGGGACGTACGTATTGGGCGATCTGCAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGGGCACCTGAAGCGTTATTATCCTTGA

Coding sequence (CDS)

ATGGAGATCGGCGCTCCAGAATCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAACTCACCACAAAACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGAGTAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCAGCGCGACTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAAAGGGCCTAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTAGTCTTAAGGAGGGTCCAAACACACGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAATCCGACCTGGGACGTACGTATTGGGCGATCTGCAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGGGCACCTGAAGCGTTATTATCCTTGA

Protein sequence

MEIGAPESSWMDPIADFIRGNSPQNPKERRKLARRVARFVVRGGALYQRDFSLPLLRCLTPEKGLRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIIRPGTYVLGDLQGDVLAHPWNAGHLKRYYP
Homology
[Close]
BLAST of Moc08g14230 vs. NCBI nr
Match: XP_022159003.1 (uncharacterized protein LOC111025448 [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-31
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 0 

Query: 63  KGLRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKG 122
           +G R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FEVKG
Sbjct: 539 EGKRETAQLRLVECQNRMARHYNTRIQPRSFQVGHLVSSKIQSHVGTLDPSWEELFEVKG 598

Query: 123 IIRPGTYVLGDLQGDVLAHPWNAGHLKRYYP 154
           I+RPGTY+L DL+  VLAHPWNA HLKRYYP
Sbjct: 599 IVRPGTYMLADLERSVLAHPWNAEHLKRYYP 629

[Close]
BLAST of Moc08g14230 vs. NCBI nr
Match: XP_022143486.1 (uncharacterized protein LOC111013362 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-25
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQNPKERRKLARRVARFVVRGGALYQRDFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQ+PKERRKLARR ARFVVR GALY+R FSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEKGLRAMAQLRLAEYQGRMARHYNAR 88
           PE+GL  + ++    ++G    H  AR
Sbjct: 310 PEEGLYVLREI----HEGVCGNHSGAR 332

[Close]
BLAST of Moc08g14230 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-25
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQNPKERRKLARRVARFVVRGGALYQRDFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQ+PKERRKLARR ARFVVRG ALY+R FSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEKGLRAMAQLRLAEYQGRMARHYNAR 88
           PE+GL  + ++    ++G    H  AR
Sbjct: 352 PEEGLYVLREI----HEGVCGNHSGAR 374

[Close]
BLAST of Moc08g14230 vs. NCBI nr
Match: XP_022158219.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-25
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQNPKERRKLARRVARFVVRGGALYQRDFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQ+PKERRKLA RVARFVVR GALY+R FSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEKGLRAMAQLRLAEYQGRMARHYNAR 88
           PE+GL  + ++    ++G    H  AR
Sbjct: 256 PEEGLYVLREV----HEGVCGNHSGAR 278

[Close]
BLAST of Moc08g14230 vs. NCBI nr
Match: XP_022156070.1 (uncharacterized protein K02A2.6-like [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-25
Identity = 55/77 (71.43%), Postives = 68/77 (88.31%), Query Frame = 0 

Query: 66  RAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIIR 125
           R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFEVKGI+R
Sbjct: 274 REAAQLRLAEYQNQMARHYNSRVRSRSFQIGYLVLRKVQKHVEVLEPSWEGPFEVKGIVR 333

Query: 126 PGTYVLGDLQGDVLAHP 143
           PGTY+L DL+G +L+HP
Sbjct: 334 PGTYMLADLEGKLLSHP 350

[Close]
BLAST of Moc08g14230 vs. ExPASy TrEMBL
Match: A0A6J1DXL9 (uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025448 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 0 

Query: 63  KGLRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKG 122
           +G R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FEVKG
Sbjct: 539 EGKRETAQLRLVECQNRMARHYNTRIQPRSFQVGHLVSSKIQSHVGTLDPSWEELFEVKG 598

Query: 123 IIRPGTYVLGDLQGDVLAHPWNAGHLKRYYP 154
           I+RPGTY+L DL+  VLAHPWNA HLKRYYP
Sbjct: 599 IVRPGTYMLADLERSVLAHPWNAEHLKRYYP 629

[Close]
BLAST of Moc08g14230 vs. ExPASy TrEMBL
Match: A0A6J1CQD7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 6.3e-26
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQNPKERRKLARRVARFVVRGGALYQRDFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQ+PKERRKLARR ARFVVR GALY+R FSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEKGLRAMAQLRLAEYQGRMARHYNAR 88
           PE+GL  + ++    ++G    H  AR
Sbjct: 310 PEEGLYVLREI----HEGVCGNHSGAR 332

[Close]
BLAST of Moc08g14230 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.2e-26
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQNPKERRKLARRVARFVVRGGALYQRDFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQ+PKERRKLARR ARFVVRG ALY+R FSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEKGLRAMAQLRLAEYQGRMARHYNAR 88
           PE+GL  + ++    ++G    H  AR
Sbjct: 352 PEEGLYVLREI----HEGVCGNHSGAR 374

[Close]
BLAST of Moc08g14230 vs. ExPASy TrEMBL
Match: A0A6J1DYS0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-25
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQNPKERRKLARRVARFVVRGGALYQRDFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQ+PKERRKLA RVARFVVR GALY+R FSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEKGLRAMAQLRLAEYQGRMARHYNAR 88
           PE+GL  + ++    ++G    H  AR
Sbjct: 256 PEEGLYVLREV----HEGVCGNHSGAR 278

[Close]
BLAST of Moc08g14230 vs. ExPASy TrEMBL
Match: A0A6J1DP99 (uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023037 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-25
Identity = 55/77 (71.43%), Postives = 68/77 (88.31%), Query Frame = 0 

Query: 66  RAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIIR 125
           R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFEVKGI+R
Sbjct: 274 REAAQLRLAEYQNQMARHYNSRVRSRSFQIGYLVLRKVQKHVEVLEPSWEGPFEVKGIVR 333

Query: 126 PGTYVLGDLQGDVLAHP 143
           PGTY+L DL+G +L+HP
Sbjct: 334 PGTYMLADLEGKLLSHP 350

The following BLAST results are available for this feature:
BLAST of Moc08g14230 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159003.16.0e-3170.33uncharacterized protein LOC111025448 [Momordica charantia][more]
XP_022143486.11.3e-2572.41uncharacterized protein LOC111013362 [Momordica charantia][more]
XP_022136647.11.7e-2572.41uncharacterized protein LOC111008302 [Momordica charantia][more]
XP_022158219.15.0e-2572.41protein NYNRIN-like [Momordica charantia][more]
XP_022156070.15.0e-2571.43uncharacterized protein K02A2.6-like [Momordica charantia][more]

Pages

BLAST of Moc08g14230 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g14230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXL92.9e-3170.33uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1CQD76.3e-2672.41Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1[more]
A0A6J1C6178.2e-2672.41Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1[more]
A0A6J1DYS02.4e-2572.41Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1[more]
A0A6J1DP992.4e-2571.43uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023... [more]

Pages

BLAST of Moc08g14230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g14230.1Moc08g14230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity