Moc08g13260 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g13260
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Translocon-associated protein subunit beta
Location	chr8: 10068983 .. 10071290 (-)
RNA-Seq Expression	Moc08g13260
Synteny	Moc08g13260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCCGATACAATCTCCTCTGATCCGTCTCCTGTTTGCTTTGCTTTTCGTTGCGTCAACGATCGCGACCTCCGATGTCCCATTCATTGTCGCGCACAAGAAGGCTTCCCTGACTCGCCTCAAGTCCGGCGCCGAACGCGTCTCCGTCTCCATAGACATTTACAATCAAGGATCTTCGTATGTTCCCTTCAATTCCTCCTATCTGATGTCAGTTTTGTTTCCTAGATTCAGCTTTACCGACCGTGCGGTCTCTGAGTTGTAGATCGAATCGTTCTTTGCGCATGCGTGGTTTGATTGTTTTTTTAGTTTTGTTCTGGATCTAAATTGGATTTGGTTGCTCGTTGTTTGGTCTTTTTTTTTTTTTTCCTTCGCTTCTCTCTCTGTTTCTGTGATTGTTTTTAAAGTAGTCGTTTTCCGCGAAAAAAATGTCGAGTTCAGGCTCCGGGAAAATGTTTTCGTTCATAGAAGAATAGTAGTTTTCATTGGCATGGAGAGGTGGGTGAGGTGGGCAACTGGATGTGAAGTTTGGTGCATTTGTAATTTTAGCGATTATGAAAAAGGTTCGTAATGTCTTGGTGCGATGCCAAAATCTGAAAGCAACCAGGCGTAGCTCCCTTAGCTGCGTCAGTAAATTTTTCATTTTGCCTGTTTAATGTAAAATTGCGTCAAATGGGTTTTCAAGTCACTTGATTTCGACATTGCTGCATTGCCTGTCAGAAAATTCGATCGGCGATGATATTCATGGTCATTCCAGGAGTTGTGACTAGAACTTGTTTCACATTAAAAATTGTTCTGTAGGGCTGCTATACATTGTAGAGCAGGAAGAGATGAACTGGAGTGGGTTTTTGTCAAATTTTTATAATTTGATGTGAACTACTCAAGCTGTTGCTTCAATCGGGTTGTCTTTTATTTTTTTCCTTAAACTTCACATTTGCTATCTACTAATAATGCAGATTGCAGATGTTAAGTTTAAGATAAGTGAGTACTAACTGAAAAGTGAAAGTTGTCGGGACCAAAGTAGCACTTGTATCTATTTTACTGAAACGAAGCAGATAATTACTTATGTATTTGACTATGAACTATCCAGGAAGTGCATGCTGGTGCAAATCGAAGAAATTACAGATGTTCTTTTGATCTGTTTACTTGGGCTTCTATTATTTATGATAAAGGAGAGCGTGATAAATTGGAACTCTGGAAAGGAGAAATTACCCGTTTCACTTATCTTTTTCTCTCTTTTTATATGGGAAATCTCCTCGTGTTTAGTCTTTTCCTGTCATGTTCCTTTTCTTGACCTTTTTACTGTCCTTGAAGCGGATTATACTGTGCAAATTTATCCTTTTGGCTTATTGGTTCATTTTTACCTTCTTAAATTTCTTTTTGTAGTTTTGCTATCTTATGTTGGGACTTGAAAAAAGAAACTCTTTTTCCTTCGGTAAATTTCATTTTTAAGTGAGCTGGTTTCTTATGTTTTCTCCCTGTTTTTGTATTTTCCTTATAATGATTACCAGGACCGCGTATGATGTAAGTCTGAATGATGCAAGCTGGCCAGTTGACGTCTTTGATATTATCAGTGGTGAAACTTCAAAATCGTGGGAAAGACTTGATGCGTAAGTGACACCATTTATTTTGTATTCTCTCCTATATGCAATGAAATCCTCCATTGGTTTTTTCTGCTGCTAACACATTTCCCATGTTTGGCAGTGGTGCTCATCTATCTCATTCTTTTGAGTTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCCGCTGTTATCACATTCCGCGTCCCTACAAAATCCGCTTTACAGGTAAAATATCTGATCAACGATGGTTATGTTCTGATTGCTTAAAGATGCAGACGTTTTATCGTTTTTCTGGATATCTGTAGGAGGCCTACTCAACCCCAATACTACCTTTGGATGTCCTTGCCGACAGGCCACCGGAGAAGAAGTTTGAGTGGGTAAGTTAATCCAAACAATTTTCTTTTCTCGTTTGAAGCTTAATGGTTGATTTACTAATTTGGTTAACTGGTGAAATTTTGCCTTTGCATGAAATTTATCCTTCACTGGCGCATAATTTCAACAGGTTAAGGTACGATCAATTTCATGTATCCATCTTGATTCTTTGTCATTCTGATCAATGTCTTTTTAATTGACCCAATACTTCTTTCACCCTGCAGAGGCTGCTCGCAAAGTACGGCTCCCTGATCTCGGTGGTCTCCATTGTAGTTCTGTTCATCTATCTGGTGGCGTCCCCATCGAAATCTGCCGCAAAAGGAAGCAAGAAGAAGCGTTAATTTAA

mRNA sequence

ATGGCGAATCCGATACAATCTCCTCTGATCCGTCTCCTGTTTGCTTTGCTTTTCGTTGCGTCAACGATCGCGACCTCCGATGTCCCATTCATTGTCGCGCACAAGAAGGCTTCCCTGACTCGCCTCAAGTCCGGCGCCGAACGCGTCTCCGTCTCCATAGACATTTACAATCAAGGATCTTCGACCGCGTATGATGTAAGTCTGAATGATGCAAGCTGGCCAGTTGACGTCTTTGATATTATCAGTGGTGAAACTTCAAAATCGTGGGAAAGACTTGATGCTGGTGCTCATCTATCTCATTCTTTTGAGTTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCCGCTGTTATCACATTCCGCGTCCCTACAAAATCCGCTTTACAGGAGGCCTACTCAACCCCAATACTACCTTTGGATGTCCTTGCCGACAGGCCACCGGAGAAGAAGTTTGAGTGGGTAAAGGCTGCTCGCAAAGTACGGCTCCCTGATCTCGGTGGTCTCCATTGTAGTTCTGTTCATCTATCTGGTGGCGTCCCCATCGAAATCTGCCGCAAAAGGAAGCAAGAAGAAGCGTTAATTTAA

Coding sequence (CDS)

ATGGCGAATCCGATACAATCTCCTCTGATCCGTCTCCTGTTTGCTTTGCTTTTCGTTGCGTCAACGATCGCGACCTCCGATGTCCCATTCATTGTCGCGCACAAGAAGGCTTCCCTGACTCGCCTCAAGTCCGGCGCCGAACGCGTCTCCGTCTCCATAGACATTTACAATCAAGGATCTTCGACCGCGTATGATGTAAGTCTGAATGATGCAAGCTGGCCAGTTGACGTCTTTGATATTATCAGTGGTGAAACTTCAAAATCGTGGGAAAGACTTGATGCTGGTGCTCATCTATCTCATTCTTTTGAGTTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCCGCTGTTATCACATTCCGCGTCCCTACAAAATCCGCTTTACAGGAGGCCTACTCAACCCCAATACTACCTTTGGATGTCCTTGCCGACAGGCCACCGGAGAAGAAGTTTGAGTGGGTAAAGGCTGCTCGCAAAGTACGGCTCCCTGATCTCGGTGGTCTCCATTGTAGTTCTGTTCATCTATCTGGTGGCGTCCCCATCGAAATCTGCCGCAAAAGGAAGCAAGAAGAAGCGTTAATTTAA

Protein sequence

MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVKAARKVRLPDLGGLHCSSVHLSGGVPIEICRKRKQEEALI

Homology

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BLAST of Moc08g13260 vs. NCBI nr
Match: XP_022156478.1 (translocon-associated protein subunit beta [Momordica charantia])

HSP 1 Score: 306.2 bits (783), Expect = 2.0e-79
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 156

[Close]

BLAST of Moc08g13260 vs. NCBI nr
Match: XP_008450004.1 (PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_008450005.1 PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_016900804.1 PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >KAA0037850.1 translocon-associated protein subunit beta [Cucumis melo var. makuwa] >TYK27227.1 translocon-associated protein subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-71
Identity = 140/156 (89.74%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA+P   PLIRLLFA LF++STIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSLNDASWP D+FDI+SGETS SWERLDAG H+SHSFELEAK+KGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FRVPTKSALQEA STPILPLDVLADRPPEKKFEWVK
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVK 156

[Close]

BLAST of Moc08g13260 vs. NCBI nr
Match: XP_038894726.1 (translocon-associated protein subunit beta [Benincasa hispida])

HSP 1 Score: 279.6 bits (714), Expect = 2.0e-71
Identity = 138/156 (88.46%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MANPIQ PLI LL ALLFV+STIATSDVPFIVAHKKASLTRLKSG ERVSVSIDIYN+GS
Sbjct: 1   MANPIQPPLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNRGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYD SLNDASWP D+FDI+SGETSKSWERLDAG H+SHSFELEAKTKG+FHGSPA+IT
Sbjct: 61  STAYDASLNDASWPEDMFDIVSGETSKSWERLDAGGHISHSFELEAKTKGLFHGSPAIIT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FRVPTKSALQEA STPILPLD+LAD+PPEKK EWVK
Sbjct: 121 FRVPTKSALQEALSTPILPLDILADKPPEKKLEWVK 156

[Close]

BLAST of Moc08g13260 vs. NCBI nr
Match: XP_022983434.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita maxima])

HSP 1 Score: 277.7 bits (709), Expect = 7.6e-71
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MAN IQ+ LI LL ALLFV+STIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+LNDASWP DVFDI+SGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FRVPTKSALQEA STPILPLDVLADRPPEKKFEWVK
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVK 156

[Close]

BLAST of Moc08g13260 vs. NCBI nr
Match: XP_022928574.1 (translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] >XP_023529270.1 translocon-associated protein subunit beta-like [Cucurbita pepo subsp. pepo] >KAG6588872.1 Translocon-associated protein subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-70
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MANP  +PL+ +L ALL V+STIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSLNDASWP DVFD+ISGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FRVPTKSALQEA STPILPLDVLADR PE KFEWVK
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRLPENKFEWVK 156

[Close]

BLAST of Moc08g13260 vs. ExPASy Swiss-Prot
Match: P23438 (Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.6e-09
Identity = 42/163 (25.77%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 10  IRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLN 69
           +RLL ++L     ++ ++    +   K+ L R       +++  +IYN GSS A DV L+
Sbjct: 1   MRLLASVLLALFAVSHAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 70  DASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVITFRVPTKSAL 129
           D S+P + F I+SG  +  W+R+   +++SH+  L     G F+ + A +T+       +
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPV 120

Query: 130 QEAYSTPILPLDVLADRPPEKKF-----EWVKAARKVRLPDLG 168
              +++      +LA R  +++F     +W  A   + LP +G
Sbjct: 121 VIGFTSAPGQGGILAQREFDRRFSPHFLDWA-AFGVMTLPSIG 162

[Close]

BLAST of Moc08g13260 vs. ExPASy Swiss-Prot
Match: Q5E9E4 (Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-08
Identity = 43/161 (26.71%), Postives = 80/161 (49.69%), Query Frame = 0


Query: 12  LLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDA 71
           L FA+L + +     +   ++A  K+ L R       +++  +IYN GSS A DV L+D 
Sbjct: 4   LAFAVLALFAVTQAEEGARLLA-SKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDD 63

Query: 72  SWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQE 131
           S+P + F I+SG  +  W+R+   +++SH+  L     G F+ + A +T+       +  
Sbjct: 64  SFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPVVI 123

Query: 132 AYSTPILPLDVLADRPPEKKF-----EWVKAARKVRLPDLG 168
            +++      +LA R  +++F     +W  A   + LP +G
Sbjct: 124 GFTSAPGQGGILAQREFDRRFSPHFLDWA-AFGVMTLPSIG 162

[Close]

BLAST of Moc08g13260 vs. ExPASy Swiss-Prot
Match: Q9CPW5 (Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-08
Identity = 42/163 (25.77%), Postives = 79/163 (48.47%), Query Frame = 0


Query: 10  IRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLN 69
           +RLL  ++     ++ ++    +   K+ L R       +++  +IYN GSS A DV L+
Sbjct: 1   MRLLAVVVLALLAVSQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 70  DASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVITFRVPTKSAL 129
           D S+P + F I+SG  +  W+R+   +++SH+  L     G F+ + A IT+       +
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPV 120

Query: 130 QEAYSTPILPLDVLADRPPEKKF-----EWVKAARKVRLPDLG 168
               ++      +LA R  +++F     +W  A   + LP +G
Sbjct: 121 VIGSTSAPGQGGILAQREFDRRFSPHFLDWA-AFGVMTLPSIG 162

[Close]

BLAST of Moc08g13260 vs. ExPASy Swiss-Prot
Match: P43308 (Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 42/163 (25.77%), Postives = 78/163 (47.85%), Query Frame = 0


Query: 10  IRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLN 69
           +RLL  ++     +  ++    +   K+ L R       +++  +IYN GSS A DV L+
Sbjct: 1   MRLLSFVVLALFAVTQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 70  DASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVITFRVPTKSAL 129
           D S+P + F I+SG  +  W+R+   +++SH+  L     G F+ + A IT+       +
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPV 120

Query: 130 QEAYSTPILPLDVLADRPPEKKF-----EWVKAARKVRLPDLG 168
               ++      +LA R  +++F     +W  A   + LP +G
Sbjct: 121 VIGSTSAPGQGGILAQREFDRRFSPHFLDWA-AFGVMTLPSIG 162

[Close]

BLAST of Moc08g13260 vs. ExPASy TrEMBL
Match: A0A6J1DQQ5 (Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC111023364 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.7e-80
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 156

[Close]

BLAST of Moc08g13260 vs. ExPASy TrEMBL
Match: A0A1S3BNZ1 (Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC103491721 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.7e-72
Identity = 140/156 (89.74%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA+P   PLIRLLFA LF++STIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSLNDASWP D+FDI+SGETS SWERLDAG H+SHSFELEAK+KGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FRVPTKSALQEA STPILPLDVLADRPPEKKFEWVK
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVK 156

[Close]

BLAST of Moc08g13260 vs. ExPASy TrEMBL
Match: A0A5D3DTY4 (Translocon-associated protein subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G001090 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.7e-72
Identity = 140/156 (89.74%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA+P   PLIRLLFA LF++STIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSLNDASWP D+FDI+SGETS SWERLDAG H+SHSFELEAK+KGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FRVPTKSALQEA STPILPLDVLADRPPEKKFEWVK
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVK 156

[Close]

BLAST of Moc08g13260 vs. ExPASy TrEMBL
Match: A0A6J1J7C6 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.7e-71
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MAN IQ+ LI LL ALLFV+STIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+LNDASWP DVFDI+SGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FRVPTKSALQEA STPILPLDVLADRPPEKKFEWVK
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVK 156

[Close]

BLAST of Moc08g13260 vs. ExPASy TrEMBL
Match: A0A6J1EL83 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111435340 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 6.3e-71
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MANP  +PL+ +L ALL V+STIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSLNDASWP DVFD+ISGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FRVPTKSALQEA STPILPLDVLADR PE KFEWVK
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRLPENKFEWVK 156

[Close]

BLAST of Moc08g13260 vs. TAIR 10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 205.3 bits (521), Expect = 4.5e-53
Identity = 100/156 (64.10%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI  +   + V+++ ATS+VPF+V HKKA+L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           S+AYDV+L D SW    F++++G TSKSWERLDAG  LSHS ELEAK KG+F+G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FR+PTK ALQEAYSTP+LPLD+LAD+PP K  +  K
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAK 156

[Close]

BLAST of Moc08g13260 vs. TAIR 10
Match: AT5G14030.2 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 205.3 bits (521), Expect = 4.5e-53
Identity = 100/156 (64.10%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI  +   + V+++ ATS+VPF+V HKKA+L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           S+AYDV+L D SW    F++++G TSKSWERLDAG  LSHS ELEAK KG+F+G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FR+PTK ALQEAYSTP+LPLD+LAD+PP K  +  K
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAK 156

[Close]

BLAST of Moc08g13260 vs. TAIR 10
Match: AT5G14030.3 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 205.3 bits (521), Expect = 4.5e-53
Identity = 100/156 (64.10%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI  +   + V+++ ATS+VPF+V HKKA+L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           S+AYDV+L D SW    F++++G TSKSWERLDAG  LSHS ELEAK KG+F+G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FR+PTK ALQEAYSTP+LPLD+LAD+PP K  +  K
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAK 156

[Close]

BLAST of Moc08g13260 vs. TAIR 10
Match: AT5G14030.4 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 205.3 bits (521), Expect = 4.5e-53
Identity = 100/156 (64.10%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI  +   + V+++ ATS+VPF+V HKKA+L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120
           S+AYDV+L D SW    F++++G TSKSWERLDAG  LSHS ELEAK KG+F+G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 157
           FR+PTK ALQEAYSTP+LPLD+LAD+PP K  +  K
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAK 156

The following BLAST results are available for this feature:

BLAST of Moc08g13260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156478.1	2.0e-79	100.00	translocon-associated protein subunit beta [Momordica charantia]	[more]
XP_008450004.1	1.2e-71	89.74	PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_0084500...	[more]
XP_038894726.1	2.0e-71	88.46	translocon-associated protein subunit beta [Benincasa hispida]	[more]
XP_022983434.1	7.6e-71	90.38	translocon-associated protein subunit beta isoform X1 [Cucurbita maxima]	[more]
XP_022928574.1	1.3e-70	89.74	translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] ...	[more]

BLAST of Moc08g13260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23438	8.6e-09	25.77	Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=...	[more]
Q5E9E4	4.3e-08	26.71	Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV...	[more]
Q9CPW5	5.6e-08	25.77	Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1...	[more]
P43308	1.2e-07	25.77	Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 ...	[more]

BLAST of Moc08g13260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQQ5	9.7e-80	100.00	Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A1S3BNZ1	5.7e-72	89.74	Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC1034917...	[more]
A0A5D3DTY4	5.7e-72	89.74	Translocon-associated protein subunit beta OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1J7C6	3.7e-71	90.38	Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1EL83	6.3e-71	89.74	Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Moc08g13260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14030.1	4.5e-53	64.10	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.2	4.5e-53	64.10	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.3	4.5e-53	64.10	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.4	4.5e-53	64.10	translocon-associated protein beta (TRAPB) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05753	TRAP_beta	coord: 16..155 e-value: 3.6E-47 score: 160.1
None	No IPR available	PANTHER	PTHR12861:SF6	TRANSLOCON-ASSOCIATED PROTEIN BETA (TRAPB) FAMILY PROTEIN	coord: 14..192
None	No IPR available	PANTHER	PTHR12861	TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT	coord: 14..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g13260.1	Moc08g13260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane