Moc08g13200 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g13200
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr8: 10018332 .. 10020327 (+)
RNA-Seq ExpressionMoc08g13200
SyntenyMoc08g13200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATCGGCGCTCCAGAGTCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCTCAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGTCTGTACGTCCTCAGAGAAATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTATCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTAAGAACTTGCGACAATTGCCAACGCTACGGAACCATAATCCACCAACCACCCGAGCTGCTCACCCCCATCTCGGCCCCATGGCCATTCGCGCAGTGGGGGGTAGACATCATTGGTCCTTTCCCTTTGAGCAAGGGCCAGACCAAGTTCGCTGTGGTTGCTGTGGATTACTTCACAAAGTGGGCCGAGGCCGAGGCGCTCTCCCACATAACGGAATCCAGAGTCACGTCCTTCGTATGGACAAATATCATATGTCGCTTTGGCATACCGCAGGCCATTGTGACAGACAATGGGAAGCAGTTTGACAACGCCAAGTTCAAAGACTTTTGCAGCAAGCTTGGCATAAGTCACCTTAGCTCGTCCCCCGCACATCCGCAAGCAAATGGGCAGGTGGAGGCAGTCAACAAGATCATCAAGCGAGGCATCAAACTTAGACTGGACTCCAAGAAAGGCAGGTGGGCCAAGGAGCTACCAGAGGTTCTATGGTCGTACCGGACCACCCAAAGAGAATCGACGGGTGAAACCCCGTTCTCCCTGGCCTTCGGCTCCGAAGCTGTAGTCCCGGTTGAGATCGGCATGCCATCCGACAGAGTAGAGCATTACGAGCCTACGGCAAATGAGGAAGAGCTGCTCATCAACCTCGACTTGTTGGAAGAAAGAATAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAACGCCCGCGTTCGACCTCGGACCTTTCAGGTCGGACATCTGGTCCTAAGAAAGGTCCAAACCTATGTGGGTGCCCTTGATCCGACCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTCCGACCTGGGACGTACGTATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCAGAGCACCTGAAGCGTTATTATCCTTCAAAAGGGTTTTCAATGGATCTGTAGAAAACTGTTTCAAAAGAATTATGATCGGAATAAACGTGATGATTTAATTTCATGATTCCAAGTCCGACCAGAAATTAAATGGGGGCCACGGACTCCCACGCGATCACATTCCAGCAGTCGGTTAAAATTCAATCCTCCAAAACCTAAGGGTACGAGGTGCGATGCCAAAACCACTGATGAACTTAAAATTCAAACCTTCAAGGTAAAGGGACGATGTGAAAAGTTCAAAATGATCAAGCCTCTGAACCTAAGGGTTCGATCTACGATATGAAGAACAACTACGGACTTAGGATTTTAGCCTTTTAACGTTTTTAAGTTAAGGGTGCGATGTTAAAAAATCCAGAGTTGGTGCAATGCATTGAATGCTAGACAGAGATTCAAATTCAAACTTTCAAATTATTTTAATTGAAGGCGCGACCTCAAAAGTAAGAGGTGCGAGGTAACATTGGCTGCAGTTCAAAGAAAAAGCAAAGAAAGGAAAGATGTTGCCAACAACGAAGTAAAAACAAATGGGAGCTTCTTTATTGAATGGAGAGCAGAGCCAAGGCTTATAGACCTTGCAGCTCTGCCCTGGCACTTATAAACAAAAAACAAAAGAGAAGAGAAGAAAGACAGCGAAAAGCCTCTTGAAGGGTGGTCGCCTAAGAGCCTGCTTGAGGAGCGCCCTCTTGAGTGGTGCCGACCTGATCCTCTTCGAGGTCGGAGTAGTCAGAGTCCAGATCTCTGA

mRNA sequence

ATGGAGATCGGCGCTCCAGAGTCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCTCAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGGTGGTCGCCTAAGAGCCTGCTTGAGGAGCGCCCTCTTGAGTGGTGCCGACCTGATCCTCTTCGAGGTCGGAGTAGTCAGAGTCCAGATCTCTGA

Coding sequence (CDS)

ATGGAGATCGGCGCTCCAGAGTCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCTCAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCATTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGGTGGTCGCCTAAGAGCCTGCTTGAGGAGCGCCCTCTTGAGTGGTGCCGACCTGATCCTCTTCGAGGTCGGAGTAGTCAGAGTCCAGATCTCTGA

Protein sequence

MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLTPEEGWSPKSLLEERPLEWCRPDPLRGRSSQSPDL
Homology
[Close]
BLAST of Moc08g13200 vs. NCBI nr
Match: XP_022143486.1 (uncharacterized protein LOC111013362 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKE RKLARRAARFVVR GALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEG 65
           PEEG
Sbjct: 310 PEEG 313

[Close]
BLAST of Moc08g13200 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKE RKLARRAARFVVRG ALYRRGFSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEG 65
           PEEG
Sbjct: 352 PEEG 355

[Close]
BLAST of Moc08g13200 vs. NCBI nr
Match: XP_022142324.1 (uncharacterized protein LOC111012466 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDP E RKLARRAARFVVRGGALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEG 65
           P+EG
Sbjct: 310 PKEG 313

[Close]
BLAST of Moc08g13200 vs. NCBI nr
Match: XP_022158219.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 3.0e-25
Identity = 60/64 (93.75%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKE RKLA R ARFVVR GALYRRGFSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEG 65
           PEEG
Sbjct: 256 PEEG 259

[Close]
BLAST of Moc08g13200 vs. NCBI nr
Match: XP_022158520.1 (uncharacterized protein LOC111024991 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 6.8e-25
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWM+PI DFI+GNSPQDPKE RKLARRAARFV+R GALYRRGFSLPLL+CLT
Sbjct: 240 MEIGAPESSWMEPITDFIKGNSPQDPKERRKLARRAARFVIRDGALYRRGFSLPLLKCLT 299

Query: 61  PEEG 65
           PEEG
Sbjct: 300 PEEG 303

[Close]
BLAST of Moc08g13200 vs. ExPASy TrEMBL
Match: A0A6J1CQD7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.0e-27
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKE RKLARRAARFVVR GALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEG 65
           PEEG
Sbjct: 310 PEEG 313

[Close]
BLAST of Moc08g13200 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.8e-27
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKE RKLARRAARFVVRG ALYRRGFSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEG 65
           PEEG
Sbjct: 352 PEEG 355

[Close]
BLAST of Moc08g13200 vs. ExPASy TrEMBL
Match: A0A6J1CL97 (uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012466 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDP E RKLARRAARFVVRGGALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEG 65
           P+EG
Sbjct: 310 PKEG 313

[Close]
BLAST of Moc08g13200 vs. ExPASy TrEMBL
Match: A0A6J1DYS0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 60/64 (93.75%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIADFIRGNSPQDPKE RKLA R ARFVVR GALYRRGFSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEG 65
           PEEG
Sbjct: 256 PEEG 259

[Close]
BLAST of Moc08g13200 vs. ExPASy TrEMBL
Match: A0A6J1DW30 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.3e-25
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 0 

Query: 1   MEIGAPESSWMDPIADFIRGNSPQDPKELRKLARRAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWM+PI DFI+GNSPQDPKE RKLARRAARFV+R GALYRRGFSLPLL+CLT
Sbjct: 240 MEIGAPESSWMEPITDFIKGNSPQDPKERRKLARRAARFVIRDGALYRRGFSLPLLKCLT 299

Query: 61  PEEG 65
           PEEG
Sbjct: 300 PEEG 303

The following BLAST results are available for this feature:
BLAST of Moc08g13200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143486.11.2e-2696.88uncharacterized protein LOC111013362 [Momordica charantia][more]
XP_022136647.11.6e-2696.88uncharacterized protein LOC111008302 [Momordica charantia][more]
XP_022142324.12.8e-2695.31uncharacterized protein LOC111012466 [Momordica charantia][more]
XP_022158219.13.0e-2593.75protein NYNRIN-like [Momordica charantia][more]
XP_022158520.16.8e-2589.06uncharacterized protein LOC111024991 [Momordica charantia][more]
BLAST of Moc08g13200 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g13200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CQD76.0e-2796.88Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1[more]
A0A6J1C6177.8e-2796.88Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1[more]
A0A6J1CL971.3e-2695.31uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1DYS01.5e-2593.75Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1[more]
A0A6J1DW303.3e-2589.06Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1[more]
BLAST of Moc08g13200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g13200.1Moc08g13200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity