Moc08g11220 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g11220
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein ROOT INITIATION DEFECTIVE 3-like
Location	chr8: 8302501 .. 8303398 (-)
RNA-Seq Expression	Moc08g11220
Synteny	Moc08g11220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTAGTGGTCGCTTCGTCCTCCATTGATTCTGGAATTGGTTGCTGGGACCTCCACACGGGTGCGGAACAACTACGTTACAAGTCTTCTGCTTCTCCTTCACATGGTCTTGTGTGTGTTGGCCAACAGTTTCTCACATGCTCTCAGCTCCGTGATCCCGCTGCCACTGCACGCTCCATTCTCTACTGGTCTTGGTTTAAGGTACTTGTTATTGCAAGTGTAATGAAATCAATCATCTGTTTGCCAATAGCGCGCTTGATTAATTATTCTCTGCAGCCTCAAGTAGAAGTTAAGAGCTTTCCGGCTGAAGCAATGATGCCCTTGGCTGCCAACAATGAAGGTACCTATATAGTTGGTGGTGGTTTCTCTGGAGATATTTACTTGTGGGAGGTATAGTTTGTTTTACTTTTGGAGATATTTTCTTGTGGGAGGTATAGTTTGTTTTACTTTTAAAAAAACCATGTAAAAGTCTACTCGTCATTCCATAATTTTAGTTTCCTCAGCTGGCATGCTCATTGTTGCAGGTTTTGAGCGGTCGATTGCTTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTTGTATTCTCTGAAGACGACTCCCTGTTAATTTCCGGTTCTGAAGATGGCTGTGTTAGAGTTTGGTCCCTTCTAACGTAAAAAATTTCATCCTTTCAGTCATGTGTATTTGTTTAGAGTTTATTGTCACTAATTGAAATTATTCTTACGACTATGTGTATAACAGGGTATTTGATGATGGGTGGCAAAGGGAAGCAAAACATTTATATGAACATAGTTTCACTGGGCACAATATACCTATTACTGATGTTGCTGTAGGTTATGGGGGGATCCAATGCTATTATAATCTCTTCCTCCGTGGATCGGACTTGTAA

mRNA sequence

ATGGTGCTAGTGGTCGCTTCGTCCTCCATTGATTCTGGAATTGGTTGCTGGGACCTCCACACGGGTGCGGAACAACTACGTTACAAGTCTTCTGCTTCTCCTTCACATGGTCTTGTGTGTGTTGGCCAACAGTTTCTCACATGCTCTCAGCTCCGTGATCCCGCTGCCACTGCACGCTCCATTCTCTACTGGTCTTGGTTTAAGCCTCAAGTAGAAGTTAAGAGCTTTCCGGCTGAAGCAATGATGCCCTTGGCTGCCAACAATGAAGGTACCTATATAGTTGGTGGTGGTTTCTCTGGAGATATTTACTTGTGGGAGGTTTTGAGCGGTCGATTGCTTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTTGTATTCTCTGAAGACGACTCCCTGTTAATTTCCGGTTCTGAAGATGGCTGTGTTAGAGTTTGGTCCCTTCTAACGGTATTTGATGATGGGTGGCAAAGGGAAGCAAAACATTTATATGAACATAGTTTCACTGGGCACAATATACCTATTACTGATGTTGCTGTAGGTTATGGGGGGATCCAATGCTATTATAATCTCTTCCTCCGTGGATCGGACTTGTAA

Coding sequence (CDS)

ATGGTGCTAGTGGTCGCTTCGTCCTCCATTGATTCTGGAATTGGTTGCTGGGACCTCCACACGGGTGCGGAACAACTACGTTACAAGTCTTCTGCTTCTCCTTCACATGGTCTTGTGTGTGTTGGCCAACAGTTTCTCACATGCTCTCAGCTCCGTGATCCCGCTGCCACTGCACGCTCCATTCTCTACTGGTCTTGGTTTAAGCCTCAAGTAGAAGTTAAGAGCTTTCCGGCTGAAGCAATGATGCCCTTGGCTGCCAACAATGAAGGTACCTATATAGTTGGTGGTGGTTTCTCTGGAGATATTTACTTGTGGGAGGTTTTGAGCGGTCGATTGCTTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTTGTATTCTCTGAAGACGACTCCCTGTTAATTTCCGGTTCTGAAGATGGCTGTGTTAGAGTTTGGTCCCTTCTAACGGTATTTGATGATGGGTGGCAAAGGGAAGCAAAACATTTATATGAACATAGTTTCACTGGGCACAATATACCTATTACTGATGTTGCTGTAGGTTATGGGGGGATCCAATGCTATTATAATCTCTTCCTCCGTGGATCGGACTTGTAA

Protein sequence

MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARSILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVAVGYGGIQCYYNLFLRGSDL

Homology

[Close]

BLAST of Moc08g11220 vs. NCBI nr
Match: XP_022151059.1 (protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia] >XP_022151066.1 protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia])

HSP 1 Score: 381.3 bits (978), Expect = 5.0e-102
Identity = 175/185 (94.59%), Postives = 180/185 (97.30%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 60
           MVLVVASSSIDSGIGCWDLHTGAEQLRYKS ASPSHGL+CVGQQFL CSQLRDPAATA S
Sbjct: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPSHGLICVGQQFLACSQLRDPAATAGS 60

Query: 61  ILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           ILYWSWFKPQVEVKSFPAEA+MPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWH HY
Sbjct: 61  ILYWSWFKPQVEVKSFPAEAIMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHGHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVA 180
           RAVTC+VFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHN+PITD+ 
Sbjct: 121 RAVTCVVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPITDIV 180

Query: 181 VGYGG 186
           VGYGG
Sbjct: 181 VGYGG 185

[Close]

BLAST of Moc08g11220 vs. NCBI nr
Match: KAG7037821.1 (Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365.9 bits (938), Expect = 2.2e-97
Identity = 164/185 (88.65%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 60
           MVLVVASSS+DSGIGCWDLHTGAEQLRYKS ASP+HGLVCVG++FL CSQLRDPAAT+ S
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  ILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           +LYWSWFKPQVEVKSFPAE +M LA+NNEGTYIVGGGFSGDIYLWEVLSGRLL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVA 180
           RAVTCLVFSEDDSLLISGSEDGCVRVWSLL VFDDGWQRE+KHLYEHSFTGHN+P+TD+ 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGG 186
           +GYGG
Sbjct: 181 IGYGG 185

[Close]

BLAST of Moc08g11220 vs. NCBI nr
Match: XP_022941447.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata] >KAG6608496.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 365.9 bits (938), Expect = 2.2e-97
Identity = 164/185 (88.65%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 60
           MVLVVASSS+DSGIGCWDLHTGAEQLRYKS ASP+HGLVCVG++FL CSQLRDPAAT+ S
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  ILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           +LYWSWFKPQVEVKSFPAE +M LA+NNEGTYIVGGGFSGDIYLWEVLSGRLL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVA 180
           RAVTCLVFSEDDSLLISGSEDGCVRVWSLL VFDDGWQRE+KHLYEHSFTGHN+P+TD+ 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGG 186
           +GYGG
Sbjct: 181 IGYGG 185

[Close]

BLAST of Moc08g11220 vs. NCBI nr
Match: XP_038898957.1 (protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida])

HSP 1 Score: 364.8 bits (935), Expect = 4.8e-97
Identity = 165/185 (89.19%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 60
           MVLVVASSSIDSGIGCWDLHTGAEQLRYKS ASP+HGLVCVG++FL CSQLRDPAATA S
Sbjct: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATAGS 60

Query: 61  ILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           +LYWSW KPQVEVKSFPAE +M LA+N+EGTYIVGGG SGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNDEGTYIVGGGLSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVA 180
           RAVTCLVFSEDDSLLISGSEDGC+RVW+LLTVFDDGWQREAKHLYEHSFTGHN+P+TD+ 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWALLTVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGG 186
           VGYGG
Sbjct: 181 VGYGG 185

[Close]

BLAST of Moc08g11220 vs. NCBI nr
Match: XP_023521513.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.8 bits (935), Expect = 4.8e-97
Identity = 162/185 (87.57%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 60
           MVLVVASSS+DSGIGCWDLHTGAEQLRYKS ASP+HGLVCVG++FL CSQLRDPAAT+ S
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  ILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           +LYWSWFKPQVEVKSFPAE +M LA+NNEGTYI+GGGFSGDIYLWEV+SGRLL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIIGGGFSGDIYLWEVMSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVA 180
           RAVTCLVFSEDDSLLISGSEDGCVRVWSLL VFDDGWQRE+KHLYEHSFTGHN+P+TD+ 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGG 186
           +GYGG
Sbjct: 181 IGYGG 185

[Close]

BLAST of Moc08g11220 vs. ExPASy Swiss-Prot
Match: Q9M3B4 (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.2e-68
Identity = 116/184 (63.04%), Postives = 143/184 (77.72%), Query Frame = 0


Query: 2   VLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARSI 61
           + V+ASSSID GIG WDL TG EQL++K  ASP+HGL  VG++FL  SQL     T+ SI
Sbjct: 3   ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQL-SARNTSGSI 62

Query: 62  LYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYR 121
            YWSW KPQ EVKS+P E +  LAANNEGTY+VGGG SGDIYLWEV +G+LLKKWH HYR
Sbjct: 63  FYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYR 122

Query: 122 AVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVAV 181
           +VTCLVFS DDSLL+SGS+DG +RVWSL+ +FDD  +++   LYEH+F  H + +TD+ +
Sbjct: 123 SVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVI 182

Query: 182 GYGG 186
            YGG
Sbjct: 183 DYGG 185

[Close]

BLAST of Moc08g11220 vs. ExPASy Swiss-Prot
Match: A0A1L8HX76 (WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-20
Identity = 64/188 (34.04%), Postives = 97/188 (51.60%), Query Frame = 0


Query: 3   LVVASSSIDSGIGC--WDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 62
           LV+++ +      C  W+  TG+  L Y+   +   GL  +G Q+L   QL         
Sbjct: 7   LVLSADAAGQVANCTVWEPVTGSVLLTYRGGNTSHRGLAVLGGQYLLGGQL-----GKNY 66

Query: 63  ILYWS-WFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAH 122
           I  W    + Q++ K      +  L+A+  G Y+V  G +  IYLWEV +G LL   ++H
Sbjct: 67  INVWELQRRDQLQQKIVCPGPVNCLSASPNGLYLV-AGIAESIYLWEVSTGHLLAILNSH 126

Query: 123 YRAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDV 182
           Y+ VTCL F++D S +ISG++D  V VW L +V      R  +  Y   ++ H++PITDV
Sbjct: 127 YQDVTCLTFTDDSSHIISGAKDSLVLVWGLYSVLQVETSRGPEPRY--VWSRHSLPITDV 186

Query: 183 AVGYGGIQ 188
             G GG Q
Sbjct: 187 QCGIGGPQ 186

[Close]

BLAST of Moc08g11220 vs. ExPASy Swiss-Prot
Match: Q3SZD4 (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 57/169 (33.73%), Postives = 84/169 (49.70%), Query Frame = 0


Query: 17  WDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARSILYWSWFKPQVEVKSF 76
           W+LH+GA  L Y+   +   GL  +  ++L  +QL      A  +      K Q++ K  
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQLGKNYICAWELQR----KDQLQQKIM 82

Query: 77  PAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLI 136
               +  L  +  G Y++  G S +IYLWEV +G LL     HY+ V+CL F+ D S  I
Sbjct: 83  CPGPVTCLTTSPNGLYVL-AGISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFI 142

Query: 137 SGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVAVGYGG 186
           SG +D  V  WSL +V      R       H ++ H +PITD+  G+GG
Sbjct: 143 SGGKDCLVLAWSLCSVLQADPSRTPAP--RHVWSRHTLPITDLHCGFGG 184

[Close]

BLAST of Moc08g11220 vs. ExPASy Swiss-Prot
Match: Q9BV38 (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 58/171 (33.92%), Postives = 88/171 (51.46%), Query Frame = 0


Query: 17  WDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARSILYWSWFKPQVEVKSF 76
           W+LH+GA  L Y+   +   GL  +  ++L  +QL     +A  +      K Q++ K  
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQLGKNYISAWELQR----KDQLQQKIM 82

Query: 77  PAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLI 136
               +  L A+  G Y++  G +  I+LWEV +G LL     HY+ V+CL F+ D S  I
Sbjct: 83  CPGPVTCLTASPNGLYVL-AGVAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFI 142

Query: 137 SGSEDGCVRVWSLLTVFDDGWQR--EAKHLYEHSFTGHNIPITDVAVGYGG 186
           SG +D  V VWSL +V      R    +H++ H    H +PITD+  G+GG
Sbjct: 143 SGGKDCLVLVWSLCSVLQADPSRIPAPRHVWSH----HALPITDLHCGFGG 184

[Close]

BLAST of Moc08g11220 vs. ExPASy Swiss-Prot
Match: Q499N3 (WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-17
Identity = 59/188 (31.38%), Postives = 87/188 (46.28%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGC--WDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATA 60
           M +VV + S      C  W+LH+GA  L Y+   +   GL  +  ++L  +Q        
Sbjct: 5   MEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ-----QGK 64

Query: 61  RSILYWS-WFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWH 120
             I  W    K Q++ K      +  L     G Y++  G +  IYLWEV +G LL    
Sbjct: 65  NYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVL-AGIAESIYLWEVSTGNLLVILS 124

Query: 121 AHYRAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPIT 180
            HY+ V+CL F+ D S  +S  +D  V  WSL +V      R       H ++ H +PIT
Sbjct: 125 RHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAP--RHVWSQHTLPIT 184

Query: 181 DVAVGYGG 186
           D+  G+GG
Sbjct: 185 DLHCGFGG 184

[Close]

BLAST of Moc08g11220 vs. ExPASy TrEMBL
Match: A0A6J1DDG0 (protein ROOT INITIATION DEFECTIVE 3-like OS=Momordica charantia OX=3673 GN=LOC111019080 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.4e-102
Identity = 175/185 (94.59%), Postives = 180/185 (97.30%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 60
           MVLVVASSSIDSGIGCWDLHTGAEQLRYKS ASPSHGL+CVGQQFL CSQLRDPAATA S
Sbjct: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPSHGLICVGQQFLACSQLRDPAATAGS 60

Query: 61  ILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           ILYWSWFKPQVEVKSFPAEA+MPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWH HY
Sbjct: 61  ILYWSWFKPQVEVKSFPAEAIMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHGHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVA 180
           RAVTC+VFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHN+PITD+ 
Sbjct: 121 RAVTCVVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPITDIV 180

Query: 181 VGYGG 186
           VGYGG
Sbjct: 181 VGYGG 185

[Close]

BLAST of Moc08g11220 vs. ExPASy TrEMBL
Match: A0A6J1FMG7 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC111446741 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.0e-97
Identity = 164/185 (88.65%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 60
           MVLVVASSS+DSGIGCWDLHTGAEQLRYKS ASP+HGLVCVG++FL CSQLRDPAAT+ S
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  ILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           +LYWSWFKPQVEVKSFPAE +M LA+NNEGTYIVGGGFSGDIYLWEVLSGRLL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVA 180
           RAVTCLVFSEDDSLLISGSEDGCVRVWSLL VFDDGWQRE+KHLYEHSFTGHN+P+TD+ 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGG 186
           +GYGG
Sbjct: 181 IGYGG 185

[Close]

BLAST of Moc08g11220 vs. ExPASy TrEMBL
Match: A0A5D3D9F7 (Protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003270 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.1e-97
Identity = 165/185 (89.19%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 60
           MVL+VASSSIDSGIGCWDLHTGAEQLRYKS ASP HGLVCVG++FL CSQLRD AATA S
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  ILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           +LYWSW KPQVEVKSFPAE +M LA+NNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVA 180
           RAVTCLVFSEDDSLLISGSEDGC+RVWSL+TVFDDGWQREAKHLYEHSFTGHN+P+TD+ 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGG 186
           VGYGG
Sbjct: 181 VGYGG 185

[Close]

BLAST of Moc08g11220 vs. ExPASy TrEMBL
Match: A0A1S3BU36 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.1e-97
Identity = 165/185 (89.19%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 60
           MVL+VASSSIDSGIGCWDLHTGAEQLRYKS ASP HGLVCVG++FL CSQLRD AATA S
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  ILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           +LYWSW KPQVEVKSFPAE +M LA+NNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVA 180
           RAVTCLVFSEDDSLLISGSEDGC+RVWSL+TVFDDGWQREAKHLYEHSFTGHN+P+TD+ 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGG 186
           VGYGG
Sbjct: 181 VGYGG 185

[Close]

BLAST of Moc08g11220 vs. ExPASy TrEMBL
Match: A0A0A0KZT0 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639920 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.2e-97
Identity = 163/185 (88.11%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARS 60
           MVL+VASSSIDSGIGCWDLHTG+EQLRYKS ASP HGLVCVG++FL CSQLRDPAATA S
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60

Query: 61  ILYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           +LYWSW KPQVEVKSFPAE +M LA+N+EGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVA 180
           RAVTCLVFSEDDSLL+SGSEDGC+RVWSL+TVFDDGWQREAKHLYEHSFTGHN+P+TD+ 
Sbjct: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGG 186
           VGYGG
Sbjct: 181 VGYGG 185

[Close]

BLAST of Moc08g11220 vs. TAIR 10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-69
Identity = 116/184 (63.04%), Postives = 143/184 (77.72%), Query Frame = 0


Query: 2   VLVVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARSI 61
           + V+ASSSID GIG WDL TG EQL++K  ASP+HGL  VG++FL  SQL     T+ SI
Sbjct: 3   ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQL-SARNTSGSI 62

Query: 62  LYWSWFKPQVEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYR 121
            YWSW KPQ EVKS+P E +  LAANNEGTY+VGGG SGDIYLWEV +G+LLKKWH HYR
Sbjct: 63  FYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYR 122

Query: 122 AVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNIPITDVAV 181
           +VTCLVFS DDSLL+SGS+DG +RVWSL+ +FDD  +++   LYEH+F  H + +TD+ +
Sbjct: 123 SVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVI 182

Query: 182 GYGG 186
            YGG
Sbjct: 183 DYGG 185

[Close]

BLAST of Moc08g11220 vs. TAIR 10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 41/160 (25.62%), Postives = 67/160 (41.88%), Query Frame = 0


Query: 4   VVASSSIDSGIGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARSILY 63
           ++AS+S+D  +  W     +   RY+  +S    L        TCS     A+   ++  
Sbjct: 57  LLASASVDKTMILWSATNYSLIHRYEGHSSGISDLAWSSDSHYTCS-----ASDDCTLRI 116

Query: 64  WSWFKPQVEVKSFPAEAMMPLAA--NNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYR 123
           W    P   +K              N     IV G F   I +WEV +G+ ++   AH  
Sbjct: 117 WDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSM 176

Query: 124 AVTCLVFSEDDSLLISGSEDGCVRVWS------LLTVFDD 156
            ++ + F+ D SL++S S DG  ++W       L T+ DD
Sbjct: 177 PISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTLIDD 211

[Close]

BLAST of Moc08g11220 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 4.5e-08
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 87  NNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRV 146
           N +   IV G F   + +W+V +G+ LK   AH   VT + F+ D SL++S S DG  R+
Sbjct: 122 NPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRI 181

Query: 147 W 148
           W
Sbjct: 182 W 182

[Close]

BLAST of Moc08g11220 vs. TAIR 10
Match: AT3G21540.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-08
Identity = 40/139 (28.78%), Postives = 56/139 (40.29%), Query Frame = 0


Query: 14  IGCWDLHTGAEQLRYKSSASPSHGLVCVGQQFLTCSQLRDPAATARSILYWSWFKPQVEV 73
           +G W +  G        S+S     + V     + S L        SI  W   K   EV
Sbjct: 41  VGIWHVRQGVCSKTLTPSSSRGGPSLAVTSIASSASSLVAVGYADGSIRIWDTEKGTCEV 100

Query: 74  K-SFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDD 133
             +    A+  L  N  G+ +  G    DI LW+V+    L +   H   VT LVF +  
Sbjct: 101 NFNSHKGAVTALRYNKVGSMLASGSKDNDIILWDVVGESGLFRLRGHRDQVTDLVFLDGG 160

Query: 134 SLLISGSEDGCVRVWSLLT 152
             L+S S+D  +RVW L T
Sbjct: 161 KKLVSSSKDKFLRVWDLET 179

[Close]

BLAST of Moc08g11220 vs. TAIR 10
Match: AT5G25150.1 (TBP-associated factor 5 )

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-07
Identity = 42/150 (28.00%), Postives = 61/150 (40.67%), Query Frame = 0


Query: 5   VASSSIDSGIGCWDLHTGAEQLRYKSSASP--SHGLVCVGQQFLTCSQLRDPAATARSIL 64
           V SSS D+ I  W     A  + YK    P         G  F +CS  R    TAR   
Sbjct: 433 VLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDR----TAR--- 492

Query: 65  YWSWFKPQ-VEVKSFPAEAMMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYR 124
            WS  + Q + + +     +  +  +    YI  G     + LW+V +G  ++ +  H  
Sbjct: 493 IWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRS 552

Query: 125 AVTCLVFSEDDSLLISGSEDGCVRVWSLLT 152
            V  L  S D   + SG EDG + +W L T
Sbjct: 553 MVLSLAMSPDGRYMASGDEDGTIMMWDLST 575

The following BLAST results are available for this feature:

BLAST of Moc08g11220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151059.1	5.0e-102	94.59	protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia] >XP_022151066.1 p...	[more]
KAG7037821.1	2.2e-97	88.65	Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022941447.1	2.2e-97	88.65	protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata] >KAG6608496.1 Protein R...	[more]
XP_038898957.1	4.8e-97	89.19	protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida]	[more]
XP_023521513.1	4.8e-97	87.57	protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Moc08g11220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3B4	2.2e-68	63.04	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1...	[more]
A0A1L8HX76	3.8e-20	34.04	WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1	[more]
Q3SZD4	1.1e-19	33.73	WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1	[more]
Q9BV38	1.1e-19	33.92	WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2	[more]
Q499N3	6.7e-17	31.38	WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1	[more]

BLAST of Moc08g11220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDG0	2.4e-102	94.59	protein ROOT INITIATION DEFECTIVE 3-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1FMG7	1.0e-97	88.65	protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC11144674...	[more]
A0A5D3D9F7	3.1e-97	89.19	Protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3BU36	3.1e-97	89.19	protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4...	[more]
A0A0A0KZT0	5.2e-97	88.11	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G...	[more]

BLAST of Moc08g11220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49180.1	1.6e-69	63.04	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G02730.1	1.4e-09	25.63	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G49660.1	4.5e-08	39.34	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G21540.1	5.8e-08	28.78	transducin family protein / WD-40 repeat family protein	[more]
AT5G25150.1	2.9e-07	28.00	TBP-associated factor 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 109..148 e-value: 5.7E-10 score: 49.1 coord: 69..106 e-value: 120.0 score: 3.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 111..148 e-value: 1.4E-7 score: 32.1
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 116..149 score: 13.950525
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..189 e-value: 3.5E-25 score: 90.5
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 2..186
None	No IPR available	PANTHER	PTHR18763:SF0	WD REPEAT-CONTAINING PROTEIN 18	coord: 2..186
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 116..149 score: 11.550137
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	SUPERFAMILY	50998	Quinoprotein alcohol dehydrogenase-like	coord: 4..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g11220.1	Moc08g11220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005656	nuclear pre-replicative complex
cellular_component	GO:0097344	Rix1 complex
molecular_function	GO:0005515	protein binding