Moc08g10600 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g10600
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2
Location	chr8: 7839989 .. 7842412 (-)
RNA-Seq Expression	Moc08g10600
Synteny	Moc08g10600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGGATCGGCGGCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATACCCGGTGTTTGGCTCCGCCGACTCTCGACGGAGACGGCGATGTCGACGCTCTCAGCCGGATGCCTTATCGCTTGCTTCCTCGCCAAGACCTCATTGATCTCTTCGTCTTGAAGCTCGATGGCTCTGTATTTGGTGATTCCTTCGCCGTTCTCGACCTTTTCTTTTTTCTTCTTTTCTGTCCATCACACCTGAGAACTCTGAATTAGATGATTTTCGCTTTTGCTCGAAAATTACTATCGGTCTCTTTTTTCGAGATGAGAGGTGAAAGTGCTTAAACGTAACTTGCTTAAGAGAATAGAATTGAATACTTTCTTGAGAACACTGTGCCGGAAAGCATTTAAAATGCGCGCCTAATTAAAGTGTTATGATATAGAAAAGTACAACATCGCGAAAATTAACTCTCGCGATTCCTCCACATTATTCCCCATTTTCCCCTGTTTATCGCTGTGGAGGACAAACGTACCAAGAAAATAACCTAAATTTTGATGCTACTTGCTCCCACTATCGTGTTAATTATAAATTTAATTGATTCTGTATGATTTGGCGCTCCAGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGAACTCAAACGAGCGATAGAGGAAGTTTTTGTTTCACCCGGGGGGGATGAACATTGCAAGATTACATGGTAGTTTTGACACTAATGATTTTTTTTTTTTTGTTATGAGATTCTTGATTAATTTCGCTACCAATGATTTTGTTTTTGTTCCTTTTGGAGCTTAGTAAGTTTATTTTAGTTTTTTCGTGAATTTTTCTATTTCAACTATTAAATTTTATTGCTCTTAGGTCACTTGTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATCGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGGTTTGTTGTGATGTGTCTCTTGCTTGTGCATTGAGTTAAATGCTGCTGCTCTCTAGCTTTTAATGTGTTGCTCTGTTATGTGACGCAGCTTCAGTTTATTAGGCATATGTCCATCAGCTGTTTACCAGTTAAGAGAGATAGAAAGAGCCAAACTGTTTCTTGCAGAACAGTGTTGTTGTAAGTTGTTCTCTCTAATGACTGCAGTTGCACATGAGTTTGTTTCAAGTAAAACAGTGTCGTTTTAGGTTGTTCTTTCTAATGGCTGCAGGAGCACATGTATGCCACTTCACGGGCAGATACCATTATAACTTCTGAACACAATGCTCAAAAGCTTACTTTAGGTTGTATCCATTACCAAGAAAGCAATGCACGTTGATAGAGATAGAGTCGGGAAAAAAAAGAAAAAAAAAAAAGATAAGCCCAATAAATAAGGACACCTGTCTATTAGTGCTTGTTACATGACATCTTTCACCAATTTGTGAAATATGGTTATTTCCACTGATTAAAAAATTGTACAAAGCTTCCTCCGAAAAAAATTGTACAAAAACCTTTAAATAGAAAGTTCATACAATGGGTGAAACCAAAAAACTGAAAAATAACTAAAATTCAATACACATGACACTATTTAAACTAAACATAATTAAACCATAACTATTTCTAACTGCTTAATACTTATTCAGATAACAGTTTTGAGTTCCATTGAGTTGGTGGCAGTCTGAAAAGTAAGAAAAATGTACAATTTGGAGGGCCTCCCCTGGGTTTGTGGAGGGGAAGTCAACATATTGCTTTGTAAATTCTTCAACTTTTTTTTAGAATCATATCCAAGATCGATTTTCCAGTGTTTCCACTTTACGTTGTCAGAAGTGCTGTTATCATATGTTAGGATCTACATTCACCATCCGATTAGCCTTTTATCATCTAGGACTATCATTCTCAATATACAATTTTTAATATTGAACAACTTTGTTCCAATATACAATTTTTAATATTGAACAATTTTATTCCTTTTCATTATCTTAATGAGAAGTTTGTATCGGGTTAAAAAAAATATATACAATTTTTAGTAACACGAAAACGTACTTCAATAGGCATATTTCAACAAACGGTGGGGAAGGCAAATATCTCAATATTTGCTTTTTTCTCCGCACCTTGATCCATGGTTTATTCTTGTACTGTTTACTCTGTTAGATAGTAAACTTATACTTCCTGTAAAAGTCTGCCACCAGAATCAAAATGTGTTGAAGACAATCAACTAGCCGGTCCAGATGATCCCGAGACTTATGAGGAAGTTCACGAGGATGGTTCCAATCAGGAGGAAGTTCCTATCCCTGGATTTCATCTAGCAAATTTCTTCAGAGGACGGTTCTTATATTCCAGGATATGGGGTTTTCTTAAGAGTGCATCAGAAGGCAGGAATCGGCCTTCTGGCTTCGGCATTACTTGA

mRNA sequence

ATGCCAAGGATCGGCGGCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATACCCGGTGTTTGGCTCCGCCGACTCTCGACGGAGACGGCGATGTCGACGCTCTCAGCCGGATGCCTTATCGCTTGCTTCCTCGCCAAGACCTCATTGATCTCTTCGTCTTGAAGCTCGATGGCTCTGTATTTGGTGATTCCTTCGCCGTTCTCGACCTTTTCTTTTTTCTTCTTTTCTGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGAACTCAAACGAGCGATAGAGGAAGTTTTTGTTTCACCCGGGGGGGATGAACATTGCAAGATTACATGGTCACTTGTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATCGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGCTTCAGTTTATTAGGCATATGTCCATCAGCTGTTTACCAGTTAAGAGAGATAGAAAGAGCCAAACTGTTTCTTGCAGAACAGTGTTGTTTCTGCCACCAGAATCAAAATGTGTTGAAGACAATCAACTAGCCGGTCCAGATGATCCCGAGACTTATGAGGAAGTTCACGAGGATGGTTCCAATCAGGAGGAAGTTCCTATCCCTGGATTTCATCTAGCAAATTTCTTCAGAGGACGGTTCTTATATTCCAGGATATGGGGTTTTCTTAAGAGTGCATCAGAAGGCAGGAATCGGCCTTCTGGCTTCGGCATTACTTGA

Coding sequence (CDS)

ATGCCAAGGATCGGCGGCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATACCCGGTGTTTGGCTCCGCCGACTCTCGACGGAGACGGCGATGTCGACGCTCTCAGCCGGATGCCTTATCGCTTGCTTCCTCGCCAAGACCTCATTGATCTCTTCGTCTTGAAGCTCGATGGCTCTGTATTTGGTGATTCCTTCGCCGTTCTCGACCTTTTCTTTTTTCTTCTTTTCTGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGAACTCAAACGAGCGATAGAGGAAGTTTTTGTTTCACCCGGGGGGGATGAACATTGCAAGATTACATGGTCACTTGTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATCGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGCTTCAGTTTATTAGGCATATGTCCATCAGCTGTTTACCAGTTAAGAGAGATAGAAAGAGCCAAACTGTTTCTTGCAGAACAGTGTTGTTTCTGCCACCAGAATCAAAATGTGTTGAAGACAATCAACTAGCCGGTCCAGATGATCCCGAGACTTATGAGGAAGTTCACGAGGATGGTTCCAATCAGGAGGAAGTTCCTATCCCTGGATTTCATCTAGCAAATTTCTTCAGAGGACGGTTCTTATATTCCAGGATATGGGGTTTTCTTAAGAGTGCATCAGAAGGCAGGAATCGGCCTTCTGGCTTCGGCATTACTTGA

Protein sequence

MPRIGGRERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGIT

Homology

[Close]

BLAST of Moc08g10600 vs. NCBI nr
Match: XP_022153470.1 (uncharacterized protein LOC111020973 isoform X1 [Momordica charantia] >XP_022153471.1 uncharacterized protein LOC111020973 isoform X1 [Momordica charantia])

HSP 1 Score: 498.0 bits (1281), Expect = 4.7e-137
Identity = 239/254 (94.09%), Postives = 239/254 (94.09%), Query Frame = 0


Query: 1   MPRIGGRERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVL 60
           MPRIGGRERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVL
Sbjct: 1   MPRIGGRERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVL 60

Query: 61  KLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVW 120
           KLDGSVFG               VRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVW
Sbjct: 61  KLDGSVFG---------------VRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVW 120

Query: 121 GHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFL 180
           GHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFL
Sbjct: 121 GHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFL 180

Query: 181 PPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKS 240
           PPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKS
Sbjct: 181 PPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKS 239

Query: 241 ASEGRNRPSGFGIT 255
           ASEGRNRPSGFGIT
Sbjct: 241 ASEGRNRPSGFGIT 239

[Close]

BLAST of Moc08g10600 vs. NCBI nr
Match: XP_022948349.1 (uncharacterized protein LOC111452053 [Cucurbita moschata] >KAG7036517.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394.4 bits (1012), Expect = 7.3e-106
Identity = 197/256 (76.95%), Postives = 211/256 (82.42%), Query Frame = 0


Query: 1   MPRIGG-RERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFV 60
           M RIGG RERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLV 120
           LKLDGSVFG               VRVARNGTVA+LK+AIEEVF SPG  EHCKITWSLV
Sbjct: 61  LKLDGSVFG---------------VRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLV 120

Query: 121 WGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLF 180
           WGHFCLCYEG+ LIDDKA IRV GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVLF
Sbjct: 121 WGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLF 180

Query: 181 LPPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLK 240
           LP ESK +E NQ+AG  DP  Y EVHEDGSNQEE+P+ GF LAN FRGR LYS+IWGF +
Sbjct: 181 LPAESKSIEGNQVAGQGDPVNY-EVHEDGSNQEEIPMAGFQLANIFRGRVLYSKIWGFFR 240

Query: 241 SASEGRNRP-SGFGIT 255
           SASEGRNRP SGF IT
Sbjct: 241 SASEGRNRPSSGFCIT 240

[Close]

BLAST of Moc08g10600 vs. NCBI nr
Match: XP_023525469.1 (uncharacterized protein LOC111789062 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.5 bits (1007), Expect = 2.8e-105
Identity = 195/256 (76.17%), Postives = 210/256 (82.03%), Query Frame = 0


Query: 1   MPRIGG-RERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFV 60
           M RIGG RERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLV 120
           LKLDGSVFG               VRVARNGTVA+LK+AIEEVF SPG  EHCKITWSLV
Sbjct: 61  LKLDGSVFG---------------VRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLV 120

Query: 121 WGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLF 180
           WGHFCLCYEG+ LIDDKA IRV GIKDGDQLQF+RHMSI+CLP+KRDRK+Q V C+TVLF
Sbjct: 121 WGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLF 180

Query: 181 LPPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLK 240
           LP E K +E NQ+AG  DP  Y EVHEDGSNQEE+P+ GF LAN FRGR LYS+IWGF +
Sbjct: 181 LPAEPKSIEGNQVAGQGDPVNY-EVHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFR 240

Query: 241 SASEGRNRPS-GFGIT 255
           SASEGRNRPS GF IT
Sbjct: 241 SASEGRNRPSAGFCIT 240

[Close]

BLAST of Moc08g10600 vs. NCBI nr
Match: XP_022998358.1 (uncharacterized protein LOC111493024 [Cucurbita maxima])

HSP 1 Score: 391.7 bits (1005), Expect = 4.7e-105
Identity = 196/256 (76.56%), Postives = 210/256 (82.03%), Query Frame = 0


Query: 1   MPRIGG-RERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFV 60
           M RIGG RERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLV 120
           LKLDGSVFG               VRVARNGTVA+LK+AIEEVF SP   EHCKITWSLV
Sbjct: 61  LKLDGSVFG---------------VRVARNGTVADLKQAIEEVFDSPRASEHCKITWSLV 120

Query: 121 WGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLF 180
           WGHFCLCYEG+ LIDDKA IRV GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVLF
Sbjct: 121 WGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLF 180

Query: 181 LPPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLK 240
           LP ESK +E NQ+AG  DP  Y EVHEDGSNQEE+P+ GF LAN FRGR LYS+IWGF +
Sbjct: 181 LPAESKSIEGNQVAGQGDPVNY-EVHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFR 240

Query: 241 SASEGRNRP-SGFGIT 255
           SASEGRNRP SGF IT
Sbjct: 241 SASEGRNRPSSGFCIT 240

[Close]

BLAST of Moc08g10600 vs. NCBI nr
Match: XP_038904269.1 (uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida])

HSP 1 Score: 369.4 bits (947), Expect = 2.5e-98
Identity = 190/260 (73.08%), Postives = 206/260 (79.23%), Query Frame = 0


Query: 1   MPRIGGR-ERSKIGNLWRFNRFIDTRCLA-PPTLDGDGDVDALSRMPYRLLPRQDLIDLF 60
           MP I    ER+KIGNLWRF+RF+D RCLA PPTLD D D  ALSR PYRLLPRQDLIDLF
Sbjct: 1   MPTISTHSERTKIGNLWRFSRFVDYRCLAPPPTLDIDADFRALSRRPYRLLPRQDLIDLF 60

Query: 61  VLKLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSL 120
           VLKLDGSVFG               +RV+RN TVA+LKRAIEEVF SPGG EHCKITWSL
Sbjct: 61  VLKLDGSVFG---------------IRVSRNATVADLKRAIEEVFDSPGGSEHCKITWSL 120

Query: 121 VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVL 180
           +WGHFCLCYEG+ LIDDK CIRVFGIKDGDQLQF+RHMSI+CLPVKRD K+Q+VSC+T+L
Sbjct: 121 IWGHFCLCYEGEKLIDDKTCIRVFGIKDGDQLQFLRHMSINCLPVKRDGKNQSVSCKTML 180

Query: 181 FLPPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPI---PGFHLANFFRGRFLYSRIW 240
            L PESK VE+NQ AG DD E Y +VH  GSNQEEV      GF LANFFRGR LYSRIW
Sbjct: 181 SLSPESKSVEENQPAGQDDLENY-QVHRGGSNQEEVVSMGRAGFQLANFFRGRVLYSRIW 240

Query: 241 GFLKSASEGRNRP-SGFGIT 255
           GF KSASEGRNRP SGF IT
Sbjct: 241 GFRKSASEGRNRPSSGFRIT 244

[Close]

BLAST of Moc08g10600 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 5.2e-06
Identity = 27/77 (35.06%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 84  VRVARNGTVAELKRAIEEVF----VSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACI 143
           V V +N TV +LK+AI+          GG +H  I+WS VW  + L   G+ L +D+  +
Sbjct: 46  VVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAGEKLTEDRKKL 105

Query: 144 RVFGIKDGDQLQFIRHM 157
           R +GI++ D++ FI+ +
Sbjct: 106 RDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Moc08g10600 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.2e-06
Identity = 27/77 (35.06%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 84  VRVARNGTVAELKRAIEEVF----VSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACI 143
           V V +N TV +LK+AI+          GG +H  I+WS VW  + L   G+ L +D+  +
Sbjct: 46  VVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAGEKLTEDRKKL 105

Query: 144 RVFGIKDGDQLQFIRHM 157
           R +GI++ D++ FI+ +
Sbjct: 106 RDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Moc08g10600 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.0e-05
Identity = 26/77 (33.77%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 84  VRVARNGTVAELKRAIEEVF----VSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACI 143
           V V ++ TV +LK+AI+          GG +H  I+WS VW  + L   G+ L +D+  +
Sbjct: 55  VVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAGEKLTEDRKKL 114

Query: 144 RVFGIKDGDQLQFIRHM 157
           R +GI++ D++ FI+ +
Sbjct: 115 RDYGIRNRDEVSFIKKL 129

[Close]

BLAST of Moc08g10600 vs. ExPASy TrEMBL
Match: A0A6J1DGY1 (uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020973 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.3e-137
Identity = 239/254 (94.09%), Postives = 239/254 (94.09%), Query Frame = 0


Query: 1   MPRIGGRERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVL 60
           MPRIGGRERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVL
Sbjct: 1   MPRIGGRERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVL 60

Query: 61  KLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVW 120
           KLDGSVFG               VRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVW
Sbjct: 61  KLDGSVFG---------------VRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVW 120

Query: 121 GHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFL 180
           GHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFL
Sbjct: 121 GHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFL 180

Query: 181 PPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKS 240
           PPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKS
Sbjct: 181 PPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKS 239

Query: 241 ASEGRNRPSGFGIT 255
           ASEGRNRPSGFGIT
Sbjct: 241 ASEGRNRPSGFGIT 239

[Close]

BLAST of Moc08g10600 vs. ExPASy TrEMBL
Match: A0A6J1G9M5 (uncharacterized protein LOC111452053 OS=Cucurbita moschata OX=3662 GN=LOC111452053 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.5e-106
Identity = 197/256 (76.95%), Postives = 211/256 (82.42%), Query Frame = 0


Query: 1   MPRIGG-RERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFV 60
           M RIGG RERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLV 120
           LKLDGSVFG               VRVARNGTVA+LK+AIEEVF SPG  EHCKITWSLV
Sbjct: 61  LKLDGSVFG---------------VRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLV 120

Query: 121 WGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLF 180
           WGHFCLCYEG+ LIDDKA IRV GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVLF
Sbjct: 121 WGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLF 180

Query: 181 LPPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLK 240
           LP ESK +E NQ+AG  DP  Y EVHEDGSNQEE+P+ GF LAN FRGR LYS+IWGF +
Sbjct: 181 LPAESKSIEGNQVAGQGDPVNY-EVHEDGSNQEEIPMAGFQLANIFRGRVLYSKIWGFFR 240

Query: 241 SASEGRNRP-SGFGIT 255
           SASEGRNRP SGF IT
Sbjct: 241 SASEGRNRPSSGFCIT 240

[Close]

BLAST of Moc08g10600 vs. ExPASy TrEMBL
Match: A0A6J1KGI2 (uncharacterized protein LOC111493024 OS=Cucurbita maxima OX=3661 GN=LOC111493024 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.3e-105
Identity = 196/256 (76.56%), Postives = 210/256 (82.03%), Query Frame = 0


Query: 1   MPRIGG-RERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFV 60
           M RIGG RERSKIGNLWRFNRFID RCLAP TLDGDGDVDAL R PYRLLPR +LIDLFV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLV 120
           LKLDGSVFG               VRVARNGTVA+LK+AIEEVF SP   EHCKITWSLV
Sbjct: 61  LKLDGSVFG---------------VRVARNGTVADLKQAIEEVFDSPRASEHCKITWSLV 120

Query: 121 WGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLF 180
           WGHFCLCYEG+ LIDDKA IRV GIKDGDQLQFIRHMSI+CLP+KRDRK+Q V C+TVLF
Sbjct: 121 WGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLF 180

Query: 181 LPPESKCVEDNQLAGPDDPETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLK 240
           LP ESK +E NQ+AG  DP  Y EVHEDGSNQEE+P+ GF LAN FRGR LYS+IWGF +
Sbjct: 181 LPAESKSIEGNQVAGQGDPVNY-EVHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFR 240

Query: 241 SASEGRNRP-SGFGIT 255
           SASEGRNRP SGF IT
Sbjct: 241 SASEGRNRPSSGFCIT 240

[Close]

BLAST of Moc08g10600 vs. ExPASy TrEMBL
Match: A0A1S3BY00 (uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494657 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 4.2e-91
Identity = 170/245 (69.39%), Postives = 190/245 (77.55%), Query Frame = 0


Query: 8   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 67
           +R+KI NLWRF RFID RC APPTLD + D DALSR PYRLLPRQDLIDLFVLKLDGSVF
Sbjct: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFVLKLDGSVF 68

Query: 68  GDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCY 127
           G               VRV+RN TVA+LKRAIEEVF SPGG EH KITWSL+WGHFCLCY
Sbjct: 69  G---------------VRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCY 128

Query: 128 EGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCV 187
           EG+ L DDKACIR + IKDGDQLQFIRHMSI+CL +K+DRK+QTV C+T+LF  PESK V
Sbjct: 129 EGEKLTDDKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAV 188

Query: 188 EDNQLAGPDDPETYEEVHEDGSNQEEVPIPG---FHLANFFRGRFLYSRIWGFLKSASEG 247
           E+NQ  G DD + Y +VH D SNQEEV       F L+NFF+GR LYSR+WGF KSASEG
Sbjct: 189 EENQADGRDDIKDY-QVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEG 237

Query: 248 RNRPS 250
           RNR S
Sbjct: 249 RNRAS 237

[Close]

BLAST of Moc08g10600 vs. ExPASy TrEMBL
Match: A0A0A0KTJ1 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.6e-90
Identity = 169/245 (68.98%), Postives = 190/245 (77.55%), Query Frame = 0


Query: 8   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 67
           +R+KI NLWRF RFID RC APPTLD D D DALSR PYRLLPRQD IDLFVLKLDGSVF
Sbjct: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVF 68

Query: 68  GDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCY 127
           G               +RV+RN TVA+LKRAIE+VF SPGG EH KITWSL+WGHFCLCY
Sbjct: 69  G---------------IRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCY 128

Query: 128 EGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCV 187
           EG+ LIDDK CI+ +GIKDGDQLQFIRHMSI+CL +K+DRK+QTV C+ +LFL PESK V
Sbjct: 129 EGEKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFLSPESKAV 188

Query: 188 EDNQLAGPDDPETYEEVHEDGSNQEEVPI---PGFHLANFFRGRFLYSRIWGFLKSASEG 247
           E+NQ  G DD + Y +VH D SN+EEV      GF LAN F+GR LYSRIWGF KSASEG
Sbjct: 189 EENQADGQDDFKDY-QVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEG 237

Query: 248 RNRPS 250
           RNR S
Sbjct: 249 RNRAS 237

[Close]

BLAST of Moc08g10600 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-33
Identity = 88/236 (37.29%), Postives = 124/236 (52.54%), Query Frame = 0


Query: 22  IDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVFGDSFAVLDLFFFLL 81
           ID R L+   L+  G +    R  Y  LP Q  I L V+KL+GS               L
Sbjct: 21  IDPRFLSSFALNDGGSISG-RRSSYLKLPPQGRIKLSVVKLNGS---------------L 80

Query: 82  FCVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRV 141
           F V VA++ +VAELKRA+E+VF     + H  I+WS VWGHFCLCY  Q L++DK  IR 
Sbjct: 81  FDVEVAKDCSVAELKRAVEQVFTISPLEGHGMISWSHVWGHFCLCYRDQRLVNDKTSIRY 140

Query: 142 FGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKC----VEDNQLAGPDD 201
            G+ DGDQL F+RH+SI   P+  +++S++ SC+  L L   S      +++    G DD
Sbjct: 141 LGLNDGDQLHFVRHLSIDHSPM--NKRSKSPSCKRYLELDVSSIVNEIQIQNQNQNGVDD 200

Query: 202 PETYEEVHEDGSNQEEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGI 254
               E+ +     Q+E+P     L N  +G   Y+  WG  +   E R+ PS F +
Sbjct: 201 --VAEKCYPGA--QDELPAAESRLVNLIKGWLPYAGRWGVSRKGPECRSGPSRFSL 234

[Close]

BLAST of Moc08g10600 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-19
Identity = 59/140 (42.14%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 38  VDALSR---MPYRLLPRQDLIDLFVLKLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAE 97
           +D L R     Y  +P ++ I L VLKLDGS FG               ++V +  TV E
Sbjct: 19  IDGLPRRRSFNYNQMP-EEPIKLTVLKLDGSSFG---------------IQVLKTATVGE 78

Query: 98  LKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIR 157
           LK A+E  F         KI+W  VWG FCL YE + LI++   +  FGIKDGDQL+FIR
Sbjct: 79  LKMAVEAAFSHLPISGPGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIR 138

Query: 158 HMSISC-LPVKRDRKSQTVS 174
           H+S  C L VK   K+  VS
Sbjct: 139 HISNYCMLMVKHKSKTPRVS 142

[Close]

BLAST of Moc08g10600 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-18
Identity = 56/134 (41.79%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 46  YRLLPRQDLIDLFVLKLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVS 105
           Y  LP +  I L VLKLDGS F                V V  + TV +LK AIE  F  
Sbjct: 11  YDKLPNEP-IRLSVLKLDGSSFD---------------VYVLTSATVGDLKVAIETAFSH 70

Query: 106 PGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISCLPVK- 165
                  KI+WS VWGHFCLC+ GQ LI D  CI  +G+KDGD+++F  H+S + +  K 
Sbjct: 71  VPKKGPSKISWSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKG 128

Query: 166 RDRKSQTVSCRTVL 179
             RKS+  +   VL
Sbjct: 131 YSRKSKQKNLERVL 128

[Close]

BLAST of Moc08g10600 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-17
Identity = 53/123 (43.09%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 52  QDLIDLFVLKLDGSVFGDSFAVLDLFFFLLFCVRVARNGTVAELKRAIEEVFVSPGGDEH 111
           ++ I L VLKLDGS F                  V +  TV ELK A+E  F        
Sbjct: 3   EEPIKLTVLKLDGSSF------------------VLKTATVGELKMAVEAAFSHLPISGP 62

Query: 112 CKITWSLVWGHFCLCYEGQNLIDDKACIRVFGIKDGDQLQFIRHMSISC-LPVKRDRKSQ 171
            KI+W  VWG FCL YE + LI++   +  FGIKDGDQL+FIRH+S  C L VK   K+ 
Sbjct: 63  GKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSKTP 107

Query: 172 TVS 174
            VS
Sbjct: 123 RVS 107

The following BLAST results are available for this feature:

BLAST of Moc08g10600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153470.1	4.7e-137	94.09	uncharacterized protein LOC111020973 isoform X1 [Momordica charantia] >XP_022153...	[more]
XP_022948349.1	7.3e-106	76.95	uncharacterized protein LOC111452053 [Cucurbita moschata] >KAG7036517.1 U11/U12 ...	[more]
XP_023525469.1	2.8e-105	76.17	uncharacterized protein LOC111789062 [Cucurbita pepo subsp. pepo]	[more]
XP_022998358.1	4.7e-105	76.56	uncharacterized protein LOC111493024 [Cucurbita maxima]	[more]
XP_038904269.1	2.5e-98	73.08	uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida]	[more]

BLAST of Moc08g10600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ZBQ4	5.2e-06	35.06	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q8VIK1	5.2e-06	35.06	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q9BV90	2.0e-05	33.77	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]

BLAST of Moc08g10600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGY1	2.3e-137	94.09	uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1G9M5	3.5e-106	76.95	uncharacterized protein LOC111452053 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A6J1KGI2	2.3e-105	76.56	uncharacterized protein LOC111493024 OS=Cucurbita maxima OX=3661 GN=LOC111493024...	[more]
A0A1S3BY00	4.2e-91	69.39	uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KTJ1	1.6e-90	68.98	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470...	[more]

BLAST of Moc08g10600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80060.1	2.3e-33	37.29	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	1.1e-19	42.14	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	4.7e-18	41.79	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	2.3e-17	43.09	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 51..164 e-value: 8.9E-27 score: 94.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..211
None	No IPR available	PANTHER	PTHR14942:SF9	OS02G0188500 PROTEIN	coord: 36..251
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 82..156 e-value: 9.7E-19 score: 67.2
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 55..155 e-value: 3.143E-28 score: 101.441
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 36..251
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 82..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g10600.1	Moc08g10600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005689	U12-type spliceosomal complex