Moc08g10350 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g10350
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr8: 7705080 .. 7705391 (+)
RNA-Seq ExpressionMoc08g10350
SyntenyMoc08g10350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCCGAAGATCCGCTTGCTCCATCTGTGAATCCCAATCCTTCTGATTCCACGACTTCAACAGCGATTCCCGTCGGTACGCCTCAGGTACCAACTCTGGCGAATCATTCTTCTGCTGAACAATATGCCAACCCTTATTTCGTCCATCATTCAGATAATAGGAGTCTTGTTCTCGTCTCCGACCTTCTCACTGATGATAATTACACTTCTTGGAGCCATTTTATGACAATTGCTCTCACTGTCAAGAACAAAATTGGATTTGTGGATGGCTCAATTTCTCGACCTGCCAGTGGTTTACTCAATTCATAG

mRNA sequence

ATGGCGCCCGAAGATCCGCTTGCTCCATCTGTGAATCCCAATCCTTCTGATTCCACGACTTCAACAGCGATTCCCGTCGGTACGCCTCAGGTACCAACTCTGGCGAATCATTCTTCTGCTGAACAATATGCCAACCCTTATTTCGTCCATCATTCAGATAATAGGAGTCTTGTTCTCGTCTCCGACCTTCTCACTGATGATAATTACACTTCTTGGAGCCATTTTATGACAATTGCTCTCACTGTCAAGAACAAAATTGGATTTGTGGATGGCTCAATTTCTCGACCTGCCAGTGGTTTACTCAATTCATAG

Coding sequence (CDS)

ATGGCGCCCGAAGATCCGCTTGCTCCATCTGTGAATCCCAATCCTTCTGATTCCACGACTTCAACAGCGATTCCCGTCGGTACGCCTCAGGTACCAACTCTGGCGAATCATTCTTCTGCTGAACAATATGCCAACCCTTATTTCGTCCATCATTCAGATAATAGGAGTCTTGTTCTCGTCTCCGACCTTCTCACTGATGATAATTACACTTCTTGGAGCCATTTTATGACAATTGCTCTCACTGTCAAGAACAAAATTGGATTTGTGGATGGCTCAATTTCTCGACCTGCCAGTGGTTTACTCAATTCATAG

Protein sequence

MAPEDPLAPSVNPNPSDSTTSTAIPVGTPQVPTLANHSSAEQYANPYFVHHSDNRSLVLVSDLLTDDNYTSWSHFMTIALTVKNKIGFVDGSISRPASGLLNS
Homology
BLAST of Moc08g10350 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 7.2e-20
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 41  EQYANPYFVHHSDNRSLVLVSDLLTDDNYTSWSHFMTIALTVKNKIGFVDGSISRPASGL 100
           EQ+ANPYF+HHSDN SLVLVSDLLTD+NYTSWS  + IALTVKNKIGFVDGSISRP  G 
Sbjct: 23  EQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTVKNKIGFVDGSISRPTDGR 82

Query: 101 LNS 104
           L+S
Sbjct: 83  LHS 85

BLAST of Moc08g10350 vs. NCBI nr
Match: XP_022142327.1 (uncharacterized protein LOC111012468 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 6.7e-18
Identity = 58/107 (54.21%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 1   MAPEDPLAPSVNP----NPSDSTTSTAIPVGTPQVPTLANHSSAEQYANPYFVHHSDNRS 60
           M  E P+ PS  P    +   S++ST   V T  +         E Y+NPY++HHSDN S
Sbjct: 1   MTDETPILPSGIPSEQVHAGVSSSSTTHGVATTSI--------LENYSNPYYLHHSDNTS 60

Query: 61  LVLVSDLLTDDNYTSWSHFMTIALTVKNKIGFVDGSISRPASGLLNS 104
           LVLVSDLL ++NYTSWS  M IALTVKNKIGFVDGSISRP+   +NS
Sbjct: 61  LVLVSDLLNENNYTSWSRSMIIALTVKNKIGFVDGSISRPSGAQINS 99

BLAST of Moc08g10350 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 6.7e-18
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 28  TPQVPTLANHSSAEQYANPYFVHHSDNRSLVLVSDLLTDDNYTSWSHFMTIALTVKNKIG 87
           T    T+    + EQY NPYF+HHSDN SLVLVSD LT++NYTSWS  M IALTVKNK+G
Sbjct: 9   TASTSTIIALIAIEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVG 68

Query: 88  FVDGSISRPASGLLNS 104
           FVDGSI RP   LL+S
Sbjct: 69  FVDGSIVRPTGDLLHS 84

BLAST of Moc08g10350 vs. NCBI nr
Match: XP_038902375.1 (uncharacterized protein LOC120089012 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 0

Query: 1   MAPEDPLAPSVNPNPSDSTTSTAIPVGTPQVPTLANHSSAEQYANPYFVHHSDNRSLVLV 60
           MA EDPL    NPN    TTS+   +  P   +L N +  EQY N YF+HHSD+ +LV+V
Sbjct: 1   MAGEDPLPSPRNPN--IPTTSSTFDLSFPPSMSL-NPTVLEQYTNSYFLHHSDSTNLVIV 60

Query: 61  SDLLTDDNYTSWSHFMTIALTVKNKIGFVDGSISRPASGLLNS 104
           S+LLT+ NYTSWS  M I L VKNK+GFVDGSI R    LL+S
Sbjct: 61  SNLLTETNYTSWSQVMVIGLIVKNKLGFVDGSIPRSTGDLLSS 100

BLAST of Moc08g10350 vs. NCBI nr
Match: XP_022891830.1 (uncharacterized protein LOC111406673 [Olea europaea var. sylvestris])

HSP 1 Score: 88.2 bits (217), Expect = 4.5e-14
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 0

Query: 7   LAPSVNPNPSDSTTSTAIPVGTPQVPTLANHSSAEQYANPYFVHHSDNRSLVLVSDLLTD 66
           +A + + NPS+  +S+++           +HS+ +  ++PY++HHSD+  L+LVS  LT 
Sbjct: 45  MADTSDQNPSNQNSSSSV-----------SHSAIDDGSSPYYLHHSDSPGLILVSQPLTG 104

Query: 67  DNYTSWSHFMTIALTVKNKIGFVDGSISRPASG--LLNS 104
           +NYTSWS  M IAL+VKNK+GF+DGSISRP S   LLNS
Sbjct: 105 ENYTSWSRAMIIALSVKNKLGFIDGSISRPESNVDLLNS 132

BLAST of Moc08g10350 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.5e-20
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 41  EQYANPYFVHHSDNRSLVLVSDLLTDDNYTSWSHFMTIALTVKNKIGFVDGSISRPASGL 100
           EQ+ANPYF+HHSDN SLVLVSDLLTD+NYTSWS  + IALTVKNKIGFVDGSISRP  G 
Sbjct: 23  EQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTVKNKIGFVDGSISRPTDGR 82

Query: 101 LNS 104
           L+S
Sbjct: 83  LHS 85

BLAST of Moc08g10350 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-18
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 28  TPQVPTLANHSSAEQYANPYFVHHSDNRSLVLVSDLLTDDNYTSWSHFMTIALTVKNKIG 87
           T    T+    + EQY NPYF+HHSDN SLVLVSD LT++NYTSWS  M IALTVKNK+G
Sbjct: 9   TASTSTIIALIAIEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVG 68

Query: 88  FVDGSISRPASGLLNS 104
           FVDGSI RP   LL+S
Sbjct: 69  FVDGSIVRPTGDLLHS 84

BLAST of Moc08g10350 vs. ExPASy TrEMBL
Match: A0A6J1CMF8 (uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012468 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-18
Identity = 58/107 (54.21%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 1   MAPEDPLAPSVNP----NPSDSTTSTAIPVGTPQVPTLANHSSAEQYANPYFVHHSDNRS 60
           M  E P+ PS  P    +   S++ST   V T  +         E Y+NPY++HHSDN S
Sbjct: 1   MTDETPILPSGIPSEQVHAGVSSSSTTHGVATTSI--------LENYSNPYYLHHSDNTS 60

Query: 61  LVLVSDLLTDDNYTSWSHFMTIALTVKNKIGFVDGSISRPASGLLNS 104
           LVLVSDLL ++NYTSWS  M IALTVKNKIGFVDGSISRP+   +NS
Sbjct: 61  LVLVSDLLNENNYTSWSRSMIIALTVKNKIGFVDGSISRPSGAQINS 99

BLAST of Moc08g10350 vs. ExPASy TrEMBL
Match: A0A0A0LI19 (Retrotran_gag_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G151060 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.4e-14
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 0

Query: 9   PSVNPNPSDSTTSTAIPVGTPQVPTLANHSSAEQYANPYFVHHSDNRSLVLVSDLLTDDN 68
           P+++PN S S   T             N S+ EQY+NPYF+HHS+N S+VLVS+LLT+ N
Sbjct: 4   PTLHPNSSSSINQT------------TNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETN 63

Query: 69  YTSWSHFMTIALTVKNKIGFVDGSISRPASGL 101
           Y SWS  M I L  KNK+GF D SI+RP + L
Sbjct: 64  YASWSQAMKIRLIGKNKLGFTDDSITRPKTWL 83

BLAST of Moc08g10350 vs. ExPASy TrEMBL
Match: A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 3   PEDPLAPSVNPNPSDSTTSTAIPVGTPQVPTLANHSSAEQYANPYFVHHSDNRSLVLVSD 62
           P DP+AP ++ + S +++S+               S  +   NPY++HH+DN  LVLV+ 
Sbjct: 12  PIDPIAPVLDDSSSPNSSSSV--------------SGVDSVLNPYYLHHTDNTELVLVTQ 71

Query: 63  LLTDDNYTSWSHFMTIALTVKNKIGFVDGSISRPASGLL 102
            LT++NY+SWS  M IAL++KNK+GF+DGSISRP   LL
Sbjct: 72  PLTEENYSSWSRSMLIALSIKNKLGFIDGSISRPIGELL 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154919.17.2e-2080.95uncharacterized protein LOC111022065 [Momordica charantia][more]
XP_022142327.16.7e-1854.21uncharacterized protein LOC111012468 [Momordica charantia][more]
XP_022152756.16.7e-1865.79uncharacterized protein LOC111020399 [Momordica charantia][more]
XP_038902375.11.3e-1654.37uncharacterized protein LOC120089012 [Benincasa hispida][more]
XP_022891830.14.5e-1447.47uncharacterized protein LOC111406673 [Olea europaea var. sylvestris][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNP73.5e-2080.95uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DIP83.3e-1865.79uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1CMF83.3e-1854.21uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A0A0LI196.4e-1450.00Retrotran_gag_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G15... [more]
A0A6J1DKR81.1e-1344.44uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 50..97
e-value: 1.7E-20
score: 72.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availablePANTHERPTHR37610:SF53SUBFAMILY NOT NAMEDcoord: 39..97
NoneNo IPR availablePANTHERPTHR37610FAMILY NOT NAMEDcoord: 39..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g10350.1Moc08g10350.1mRNA