Moc08g09090 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g09090
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionsm-like protein LSM7
Locationchr8: 6763721 .. 6772279 (-)
RNA-Seq ExpressionMoc08g09090
SyntenyMoc08g09090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAATTTCTGAAAGATTAGGTCAATTTAATTTTGTATGGTGGTTGATTTGAAGTATAATATGATTTTCCTATCGTTTGTTTTAACAGTCTGGGAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTGGACAAAGGCGTCCAAGTGAAGCTTACCGGTGGCAGACAAGGTTATTTCTACTGATTATGCTAACAGTATTACTGCCATCGACATTCGATTGGTTTCTTTCCGATTGGTTATTTTTTTCCTTCTTTTATTCTTTTTCGAGTTTGTGCTTGTGCGTTGTGATAAAGATTCAAGAGCATCAAGGCTCTTAATCGGATGTCTGATGATGAGATATTTATTTATTTATTCTGTTTTTAAGTGCTAAAAAAGTGTTCTATAAACCTTATTTCACATTTGCAGTTACGGGGACGCTGAAAGGATATGATCAATTGCTAAATCTTGTGCTGGATGAAGCTATAGAGTTTTTAAGAGGTAACCAATTTACTGGCTACTGGCAGAACATATGAGATTTGTGGAATTTCATAGGCATTTAGAATGAAAGTTTGAGTACTGATACTAGAATTCATATCATTTTTCTTATTTATCATCTTGTTCCTTTGTAGGAAGACTATTTTAAATGTATTTGTCTCCAAGGTTAACATGATGCATCAAACTCTTATTACCGACATTCTCCATCATGTTTGAGCTTGAAAACCAATGTTGAAATTTAATGTATTTTCAGCATGCTGAAACATGTCATAGATGCTTATAGGCACTTTCCAGTGGTAAATAAAATGAAACCCCAGAAAAGTGATGTGGCAGTGCCGCAGTGTAGTAAATAATGTTTCATACGAAACATTGTTTTTGTTGTAGTTGTTTTGTTTATGCATATCCATTTTTTGTAGGAAATAGATATGTCATTGATATGATGAAACATACAAATAGTTTTTGTTTCCTCTCTTTTTGAATTTTGGATGTATTTTTTATTTTATGTTTTAGATTATTGCATAAACTAGAAATTCTTAATTTGCAATGTTATCTTTTACATCTTTACATCACTACATTTTAGATAATATATGTGTACCTATACTCTATTATAAGATTTTGCTTGAATATAAATTGCCAATATGTGCAAATCTGTATTAAAGTTTGTCATAATATTTGCAAACAACCATTTCGTCTGACTATTTTTAGTTGTAACTTCAATTCATATACATAAGTGAATTTCTGATTGAACATGTTTGTGTGTGGATACATGGACAAAAGAGGAAGACAAGAATCAAAGATGTGATTAAAAAATGAAAGTGTTAAACCTCTATATTATTTATCAACCGTGGGGATACATGTAAGGGAAATTTCAAGAGCTCCCAATCTCTCCCCCGCGTTTCCTACCAAATGCATACCCCCTATACCTCTACTATGTAGCTTATATGTACTCATAAATACGACTAACAAACTTGCCGAATGTTACTCTCTGACCCCCCAAGTTGGGCCCACGCACTGACTAACATTATTTTCCTCATACTACCTCTTCCTTACACGCTTACATTTATGCACCTTGACTGTTAGAGGCCTACCAGAAATTGCATACCAATTTGAGGCAAAATTTAGATAGTGTCCATAACTATATATGATCAAAATCTTTTTGTTTATCTCCTTCTGAAGTCCCAAAAAGGAGATTTGATGGGTTTGAACCATATCATCATCCTATTTGAACATACGCTTACAAAGATCATTTGAACAAGCCTTGATTGGCTGATTATTTGTTATTGGAGCACCATTGAAGGATGGAAATTTCCAGTAGTAGCTCATGCGCACAGGAACTGGATGGGTGGGAAATGAAGAGATGTTGTTAGTCCTCAAAATTTCCTTTGCAAAGAGCTCACCACTTAGAAAACTATGAAGGTGGCTTAGGTATCGGCAACATCAAGCACAGAAATGCTGCTCTACTCTTGAAATGGATTTGGCATTTCACCAGCTATGGAGGAAGTTCATCAAGGCAAAATATGGTGGAACCAATTCTGAAATTTGGCCATTCAATCGTTACAGCTCCTGGTGCAATATTCTTACACACATCAACCTCATTAGATCCAATGCAGTCTGCCGAGTGGGAGAAAACAGTTTCATCAGCTTCTGGAACGATAATTGGCTCAAAACAGAAACTTTGGCAACCCTCTACCCCAGACTGTTTGCCCTATCTACTAATAAAGATGCTAAAATAACAGACCTTTGGTCCACAGCCACCAAATCATGGGATTATTGCTTCCGTAGGCCTCTTAAAGACATCGAAGTTGAAGATTGGATGCTACTGTCCACCAAACTCAATTACATGTCGCCCCTCCCAAATACAGACAGATGGATTTGGCCCCTTGATTCATCCAAAAAATTTTCCACAAAATCCATCTACTCCTCTATCTGACATCTTCGGGAAGCCAACAGCCACAAAATCTCTTCTATAGCATCTGGAAAGGAAAATGCCCCAAGAAAAATAAGTTTTTCTGTTGGGAACTTAGCCATGGGGCTATCAATACTTTTGTCAAGATCCAAAGAAGGTTGCCACACATAGCCCTCCCACCAAATTTTTGTCTGCTTTGCTACAAATGAGCTGAAACACCAGGACACCTCTTTATCACTTGTATTTTGCCTCAAACTTCTGGAACATGTGTCTTTGGACCTTTGGTTGGCACACTGCTCTTCACAACCACCCGTCGATCTTCCATTGCCCTAACCTCAAATTGTAGGGCTTTCTTGTAATTAGCCATCATGGCTTTTTTGGTTATTTCATACATCAATGTAATACTTGTTTCTTACCAAAAAAAAGGAAACTATACAGTATTAGGGAACTTCTTCTGAATTCTATCCGTGGTGTTCGTATGCTCTAGCACCAAGGTTCAGAGAACAAACTAGACCTTTTTTGCAGCCCGGCCTTCCAGATAGCCTTGGAGAGCCATTTCTCTAAAATTGAGGATGTGTATGGAAATCTTATAATGGTCGTAAAAAAATTATTTAGGAACTGGTATATGAGTCCATGGAGTTTCATCCAGATTTCCACCTCCATTTGGTGTTTTATTCACCAAGTATTGAACACATAAGGTCAAGAAACACTAGCATGGAAATGTGATATAGTTTTTATATGCAACAGAGTTCAAATTTCACGTACTAACAACCTTTGGAGGCTCTTTCCTGAGGGCAAGGATTTATATTTTCCCAAATCAAGTTGCTTTATTCTAGTGGTGATGTGTTTCTATTGTTTTGATTTTTGTCCCGTGCCCTATTTTCTTAATCCAAAAATTCTCTTTGGTCGACTTACTAGTTCGTTTGTCATGTTTTTCTCTTTTGTGGTAATAATGGCCTTTTACTTTTGTTCGTTGGGAACTTTTTAGATTGAGTAATACGTTTTAACATTATCCTTATACCTGTTCCTGCTATGCTTTGATGGCACTGTAGGAAATATCTGATAATACTGACTAAAGTTTTATTTGTTTTCTGCAGATCCTGACGATCCATTGAAGACAACAGACCAAACTAGACGTCTTGGCCTAATTGTATGATTCTTAAAAATGCCTCTACATATTTTCATTTTCATTTAAAAGAAAGCAACTATATTAGAGCGATGGATACCATGAGCAATTTTATCAAATTTTCTGCACAGAGTTGTATTATGTAAGCGTGCAATTTTAGACTTTATTTTGACAATCGTAAGCATCTGTGCACTAAACAGATTAGATTATCTTAATTAACGTGAAAATTTCAGAGTTTTTATTTATTTCAAATAAAAAGTAGCCATCAAACCTGCAGTGGATAATAGTATTCTGAATTTCCTGTGTGCTTTATGCTTTCTCTTCCTCTGTCTTATTTTATTGTAGTTTTAGGGTTTTACATTTATAATGAAAAATTGGTTTGAAAATTTTAATTTTATTCTATCACGAGGAAAAAAGTGAAAGTTTGGCTCTTCTTCAGTGTTCATGTGCAGGAGGAAATACATTTTCTCTAAAGCGTGCTTCTTTGTTCTTAGATTCCTTTCTTTCGTATTGGCCATGAGCCTATGTGATCAATTTGCATACTATTATCCACTGCAGGTTTGCAGGGGAACTGCTGTAATGCTCGTGTCTCCAGTTGATGGTACAGACGAGATCGCTAACCCCTTTATCCAACCGGACGGTGCATCGATGTAATTTTTGTTTACTCTAATTTCCCTGTTCTGTATCTGAATATCAAGTTCCGCCCTTTACTTTGTGATTTCTCTTTCTTTCTCTCAAACAATTAAGTTTCAACCCTTCTATCTACGTGGAGCACTTATCATGTGAAGTAAAACGGTGAAATTTTGTTAACTCTTCAGTCTTTTTTACCGCTTTCTTTGAGTTTACTGTTTTGTGTGTCTTCACTTTGGATGCCTTCCCCAAGTCTTAAAAGAGTCCATAATGCTGTTATGGCATTGCCCAATCAGCTATTGCCTGATACTGACAAAGAACTGATGGTGTAGAAAGTGACATGGATCCTCCTGCTTATTTGGCCGACAAAGGGCTTCTTTTGTTGATAGCCAACTTGCTCTCTCTTTCGGCACATGTGACTTTATGCCAACCATGTGAGCTGCAACTTGTGCTGGTAAGCTTTTCTAGACATCTCTCAAATAGTTTCTAAACTTAATTTTACTTTTTTCATTGGGAGTATTCTGATATATTCCAATTCCATGACTTGCAAAAGAGGGAAACATCAAGCAAATTGCATGCCATATTTCCCCCAAGTGGGATTTGGAAATTTGCACATAGTCCAACAAGTGAATATTAAGATGGGGAAGGAAATAACATTATAGGGATTTGAACACATGATCTTGTGCTCTGATAACACATTAAATTTAATTTAAGTTGATAGGTTATGATAAATTTAATATTTTTATAGATATCAGAGCTGATTTTTTTATATAAAAAATTATTTCTTTCTGTGAAATCAAGAATACCTTTACATGACAGTAACAAACAGGAAAGTATGAGACTTTTTTGGGATTAAGAATCGACAACAAGGTGAGACTGATATGAGTGTATTTTTTTCTTTCTTTTTTTCTTTTTTCCTTTTTGGGCTATTTTTAAATTTCATGGCTCCTTTTTTTTTCTTTTGTTCGTTTGTTCTTTTTGGGTTATTTTTAAATTTCATGGCTCCTCCTTCAAGCCCTCCAAAGCTAATGGTTGCTTTCACAGACTGTCAGAGGTAAAGGAGAGCCTAAACAGTACACTTTGTCTTGTTATCTTTTAGAGGGAGTTTCTCTTTGATTTCTGATAAAATTATAATCATATGTCAAGTTTTCATCGAAACATCATGGGATGAGTCTCTGTAATCAAAACCGAAGTTTTGATTCAGATACTTTAGGAAGTATATCCTCCCCCTGATGTTACTAATTTATAGATTATGTGAGATTTTTGTCCACGTACTTCGACTTTTTTGACATTCTGGACTCACTTTTCTTATTCTTATTATAACAATTTAATCCTAAACATAAATTTTTTTAGTACTACAAGAGTAGAGTACTTGTGTTTATATTATGAATTTTGCCATTATAAATAATCTTTATCGTCAGAGTTCTCGCAGCTCACTTGACAAACAATAAATGGGGGTAATATCATGTTTTTTAAAAATTCTCTCTTTTATCTTTGAATGAGTTAATCAGTGTTGAACAGTTAACTTTTATATATTTGTTTTTGACACATTTTAGGGGATCCATTGAATAGCATATTCCTAGATTGCTCTTTCCACCTCTTAACATCAAGGATTTAATTGTTTTGACCAAAATTCCTTAATAGTTTAATTAGATTTTCTTTCATTATTTTTTCTTTGGGGGAGCTGATGTGAGCCAAATCCAATAATCTTGCAGCCAAAAGGTGGAGAAGAAAAGTAAAATCCAAAGTCGGCAGATTAGATAGAAATTGATTGTGTTGGCTTTGGTGTCACAGTCCATCCTTCTGTCCACTTGTGTGCCATTTGCATAATATTTATTAAGCACCAATTTATGTTACAATTTTCTCTTAGTGCACATTCTATTCCTCTCCAATATTAGCATGTCAATTTTGAACCCCAATTTTCACTTTCAAACAACTTATGATATTTTCCTTGAGAGACTTCTTTTTAAACTTTTACTCTAATAATATTTATTTCCTCTCCCTACCTATTACGTCATAGGTGGATTAAGTTGTCAAATTTGAACCCTAATTTTATCTTTTTTTCAATAACTTGTGACATTTTTTTTCCATGAGAAACTTCTATTTCGAACTTTGGTATAATAATATTTATCTCCTCTCCCTACCTGTTACGTTAATGGTGGACTCAAGTTTCTATTGATTTTGCTTGGTTTTTTAATTTCTAAATGATTTTAGTCCTTAAAATTTTCATTAAACAACTTTTCAATCATTTCCATCAACTTCCTTTAATATTTTTTATAATTTTGAATTGACATCTGACCTACATGTCGTTTTTCATATATTTTTTTGTCAAATTTCTGTTATAAATAGTTTACTTAAAAAATTAATGACCAAGGAAGAAAATAATTTTATATGCAAAATTTAGATTTTTTTTTTTTTTTTTGAGTACCAAATATAGATATTGTTACCATGGAAGTATGAAAGTTGTGAAGATGGAATTCACTCTTTATTTATATGAAAAAGGAAATACTATTATACATTTTTTTTTCAATTGTTTAATTCATAGGTTGGGAAATTGAACCATTGACCTTAATAGATGTCTTATTTAGTTATATATTTTTCTTGAGTTGAAAAGTGACGCAATTCTGAAAATTAGGCAACTTTTGTTAACACCTTTTGAAAATATGAAACCCATAATTTTGTAAGGAAAAATAAAGTAAAATTTGTGGTGCCCACCTAATCTTGATTTCTTATTATTATTATTATTATTATTTTCTTAACAAAAGTTAATGGGATGGAAAAAGAGACTGCCCATAAAAAAAAAATAATAATAATAAAAAAGGATGGAGATGGCATCCCATGCCTCTCTATTTTATTATGGTCCCTACAAAGAGTACAAGTGGCACTATTTGGGTCCACATTTCACTTCAAAGTATTGTTCTCTTAGGAAATTAGCCATCCTTCCCACCTGATAAAAAACTACCCATCATCTCACCAATACCACATTTCATTTGTGGCTTCCCCAAACCAACTGTACCAACACAACCACTTTTCTTTTTCTCTCTCTCTCTCTCTTTTTTTAAGTTGTGAAAAGAATAACAATGTTTTTGAAGGAAGAGCTTGTGATTGTGAAGCATTTTCCACCACTATTCCATGGTTAAATTTTGAAAAAGGAATGATGGAAATATAGTGCGAATGAAATATGTGAAATTTACTCTGGATTTCAATTCGGTTAAGTACGTACCAAAAATAAGTTGGTTTTTTTCCTTTAAATAATGTAATTGTACATTCATATTCTTCTTTTAGCTAAAGAAATGAAGAACAATTTAGGTACGAATGAGAATGTTTACTAAAATCAGTTCTCACTCTTTGGTGTGGCACAAAGCTCAATTGGAGGAAAAAGGGAGTGGATTTGAGGAAAAAAAAAGTTTAAAATATGAAGGAAAATTCATTTACAATAGGAGTATAAAAATTGATACTATTTTTGAAAGGCTAATTTAATCACGATCCACATGACCACTAATTCAATCTTTGCAAAGAGGGTGGCTACTACTTGCTTTTTTGGATAATTCTCGTGGATTTTATTTATCAAACAATTGGCATAATTGAGTTCTCCAAAGGGATCGTCTTTGCAATCTAAGGAACGTTCATTTACCGAGAAGTCGAGCTAATAAGGTTAAATTTAATTTTAGAAAATTCACCAAAGTTCTTCTGCGTCCTAAATTTATCTCATTAACTAGCCGCCTATTTAAAATTAACCCATCTAGCACGCTTCAATTACCACACCATGCTACTGTCTATTAGTATAATTAATATTTGTCACTAAATTGTCAATTTTGAGCCTAGCTAATTAAACGAGACATAGAGGAAATGTTTTAAATTATACAATTCTAACGAGCATACAATTTATAATTCAAACAATTCTTATTTAGTGAATTATTTTCTAATTAAAAAATGAGGGAGAAAAAGGAATAAGAGAGGTAGACAAATTGTATTTGTTGACAGCTTTATTCACACATCTCCCCACCTACTTACTACTGCCAGACTGTCCACGCGCCCACCCCGTACGTCACGCCCCTACTAACTCACCACAGCCGTCCGATCACTCTTTTCATCCTCCTTCGTACACTTGTCAATCATCCCGCCGCTCCCTCCGCCTTTACGCCTAAAAACAAATTGTTCACCCATCGGTATCACAACTGCTCTGTGCAACCTGTTCAAAACCACACACGTGGCGCATTCTTATTGGTCATTCTGATCGCCAATCATAAGCACGAGTTCTCGCGTATCTTCAATTTCTCGCGAGAGGATATCGCCGGGCCGGGCCCATGGTTTCTGCACCTCCCAGTTCCCGACCAGGGAGATGATAATCGTGCAAAATTCCCAGAAATTTTTGGTCGAATTTACGAAATCTGCCATCCCGGAGGAGAGAGGAGATAG

mRNA sequence

ATGTCTGGGAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTGGACAAAGGCGTCCAAGTGAAGCTTACCGGTGGCAGACAAGTTACGGGGACGCTGAAAGGATATGATCAATTGCTAAATCTTGTGCTGGATGAAGCTATAGAGTTTTTAAGAGATCCTGACGATCCATTGAAGACAACAGACCAAACTAGACGTCTTGGCCTAATTGTTTGCAGGGGAACTGCTGTAATGCTCGTGTCTCCAGTTGATGGTACAGACGAGATCGCTAACCCCTTTATCCAACCGGACGGTGCATCGATAACTGATGGTGTAGAAAGTGACATGGATCCTCCTGCTTATTTGGCCGACAAAGGGCTTCTTTTGTTGATAGCCAACTTGCTCTCTCTTTCGGCACATGTGACTTTATGCCAACCATGTGAGCTGCAACTTGTGCTGACTGTCCACGCGCCCACCCCGTACGTCACGCCCCTACTAACTCACCACAGCCGTCCGATCACTCTTTTCATCCTCCTTCGTACACTTGTCAATCATCCCGCCGCTCCCTCCGCCTTTACGCCTAAAAACAAATTGTTCACCCATCGGTATCACAACTGCTCTGTGCAACCTGTTCAAAACCACACACGTGGCGCATTCTTATTGGTCATTCTGATCGCCAATCATAAGCACGAGTTCTCGCGTATCTTCAATTTCTCGCGAGAGGATATCGCCGGGCCGGGCCCATGGTTTCTGCACCTCCCAGTTCCCGACCAGGGAGATGATAATCGTGCAAAATTCCCAGAAATTTTTGGTCGAATTTACGAAATCTGCCATCCCGGAGGAGAGAGGAGATAG

Coding sequence (CDS)

ATGTCTGGGAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTGGACAAAGGCGTCCAAGTGAAGCTTACCGGTGGCAGACAAGTTACGGGGACGCTGAAAGGATATGATCAATTGCTAAATCTTGTGCTGGATGAAGCTATAGAGTTTTTAAGAGATCCTGACGATCCATTGAAGACAACAGACCAAACTAGACGTCTTGGCCTAATTGTTTGCAGGGGAACTGCTGTAATGCTCGTGTCTCCAGTTGATGGTACAGACGAGATCGCTAACCCCTTTATCCAACCGGACGGTGCATCGATAACTGATGGTGTAGAAAGTGACATGGATCCTCCTGCTTATTTGGCCGACAAAGGGCTTCTTTTGTTGATAGCCAACTTGCTCTCTCTTTCGGCACATGTGACTTTATGCCAACCATGTGAGCTGCAACTTGTGCTGACTGTCCACGCGCCCACCCCGTACGTCACGCCCCTACTAACTCACCACAGCCGTCCGATCACTCTTTTCATCCTCCTTCGTACACTTGTCAATCATCCCGCCGCTCCCTCCGCCTTTACGCCTAAAAACAAATTGTTCACCCATCGGTATCACAACTGCTCTGTGCAACCTGTTCAAAACCACACACGTGGCGCATTCTTATTGGTCATTCTGATCGCCAATCATAAGCACGAGTTCTCGCGTATCTTCAATTTCTCGCGAGAGGATATCGCCGGGCCGGGCCCATGGTTTCTGCACCTCCCAGTTCCCGACCAGGGAGATGATAATCGTGCAAAATTCCCAGAAATTTTTGGTCGAATTTACGAAATCTGCCATCCCGGAGGAGAGAGGAGATAG

Protein sequence

MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGASITDGVESDMDPPAYLADKGLLLLIANLLSLSAHVTLCQPCELQLVLTVHAPTPYVTPLLTHHSRPITLFILLRTLVNHPAAPSAFTPKNKLFTHRYHNCSVQPVQNHTRGAFLLVILIANHKHEFSRIFNFSREDIAGPGPWFLHLPVPDQGDDNRAKFPEIFGRIYEICHPGGERR
Homology
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BLAST of Moc08g09090 vs. NCBI nr
Match: XP_022152570.1 (sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 4.4e-48
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGASI 102
           TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGAS+
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGASM 101

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BLAST of Moc08g09090 vs. NCBI nr
Match: XP_010257259.1 (PREDICTED: sm-like protein LSM7 [Nelumbo nucifera] >DAD42338.1 TPA_asm: hypothetical protein HUJ06_000568 [Nelumbo nucifera])

HSP 1 Score: 198.7 bits (504), Expect = 6.4e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA 99

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BLAST of Moc08g09090 vs. NCBI nr
Match: XP_017969315.1 (PREDICTED: sm-like protein LSM7 [Theobroma cacao] >XP_017969318.1 PREDICTED: sm-like protein LSM7 [Theobroma cacao] >XP_021281100.1 sm-like protein LSM7 [Herrania umbratica] >XP_028069147.1 sm-like protein LSM7 [Camellia sinensis] >EOX96719.1 Small nuclear ribonucleoprotein family protein [Theobroma cacao])

HSP 1 Score: 198.7 bits (504), Expect = 6.4e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

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BLAST of Moc08g09090 vs. NCBI nr
Match: XP_010036102.1 (sm-like protein LSM7 [Eucalyptus grandis] >XP_030546564.1 sm-like protein LSM7 [Rhodamnia argentea] >KCW47621.1 hypothetical protein EUGRSUZ_K01365 [Eucalyptus grandis] >KCW47622.1 hypothetical protein EUGRSUZ_K01365 [Eucalyptus grandis] >KZV47240.1 hypothetical protein F511_07663 [Dorcoceras hygrometricum])

HSP 1 Score: 198.4 bits (503), Expect = 8.3e-47
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA 99

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BLAST of Moc08g09090 vs. NCBI nr
Match: XP_038903588.1 (sm-like protein LSM7 [Benincasa hispida] >XP_038903589.1 sm-like protein LSM7 [Benincasa hispida] >KAA0048332.1 sm-like protein LSM7 [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-46
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTR LGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

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BLAST of Moc08g09090 vs. ExPASy Swiss-Prot
Match: Q9SI54 (Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-44
Identity = 88/94 (93.62%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

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BLAST of Moc08g09090 vs. ExPASy Swiss-Prot
Match: Q9UK45 (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-28
Identity = 56/96 (58.33%), Postives = 76/96 (79.17%), Query Frame = 0 

Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQ 63
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  IE++RDPDD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 64  TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TR+LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103

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BLAST of Moc08g09090 vs. ExPASy Swiss-Prot
Match: Q9CQQ8 (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-27
Identity = 53/92 (57.61%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQ 63
          +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ 
Sbjct: 8  KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 96
          TR+LGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99

[Close]
BLAST of Moc08g09090 vs. ExPASy Swiss-Prot
Match: Q54HF6 (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX=44689 GN=lsm7 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.2e-25
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0 

Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQ 63
          +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD +DPL TTD+
Sbjct: 8  KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPF 94
           R LGL+VCRG++VM+V P +G + I NP+
Sbjct: 68 KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

[Close]
BLAST of Moc08g09090 vs. ExPASy Swiss-Prot
Match: O74499 (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm7 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.5e-24
Identity = 51/94 (54.26%), Postives = 75/94 (79.79%), Query Frame = 0 

Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQ 63
           RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+P+D  K T  
Sbjct: 21  RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGA 80

Query: 64  TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
            R+LGL+V RGT ++L++P+DG++EI NPF+Q +
Sbjct: 81  IRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113

[Close]
BLAST of Moc08g09090 vs. ExPASy TrEMBL
Match: A0A6J1DI46 (sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGASI 102
           TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGAS+
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGASM 101

[Close]
BLAST of Moc08g09090 vs. ExPASy TrEMBL
Match: A0A6J1A2J0 (sm-like protein LSM7 OS=Herrania umbratica OX=108875 GN=LOC110414310 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.1e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of Moc08g09090 vs. ExPASy TrEMBL
Match: A0A061DVC4 (Small nuclear ribonucleoprotein family protein OS=Theobroma cacao OX=3641 GN=TCM_005909 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.1e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of Moc08g09090 vs. ExPASy TrEMBL
Match: A0A1U8A739 (sm-like protein LSM7 OS=Nelumbo nucifera OX=4432 GN=LOC104597434 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.1e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA 99

[Close]
BLAST of Moc08g09090 vs. ExPASy TrEMBL
Match: A0A2P2J3S8 (Sm domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.1e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]
BLAST of Moc08g09090 vs. TAIR 10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 181.4 bits (459), Expect = 9.8e-46
Identity = 88/94 (93.62%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of Moc08g09090 vs. TAIR 10
Match: AT2G03870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 181.4 bits (459), Expect = 9.8e-46
Identity = 88/94 (93.62%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]
BLAST of Moc08g09090 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-09
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 0 

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGL 69
          DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]
BLAST of Moc08g09090 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-09
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGL 69
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  +E            D    +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV---------NGDDKTDIGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]
BLAST of Moc08g09090 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-07
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 15 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRG 74
          +DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G++V RG
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGMVVIRG 60

Query: 75 TAVMLVSPVD 85
           +++ V  ++
Sbjct: 61 NSIVTVEALE 61

The following BLAST results are available for this feature:
BLAST of Moc08g09090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152570.14.4e-4899.01sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 ... [more]
XP_010257259.16.4e-4797.98PREDICTED: sm-like protein LSM7 [Nelumbo nucifera] >DAD42338.1 TPA_asm: hypothet... [more]
XP_017969315.16.4e-4797.98PREDICTED: sm-like protein LSM7 [Theobroma cacao] >XP_017969318.1 PREDICTED: sm-... [more]
XP_010036102.18.3e-4796.97sm-like protein LSM7 [Eucalyptus grandis] >XP_030546564.1 sm-like protein LSM7 [... [more]
XP_038903588.11.1e-4698.99sm-like protein LSM7 [Benincasa hispida] >XP_038903589.1 sm-like protein LSM7 [B... [more]
BLAST of Moc08g09090 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SI541.4e-4493.62Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1[more]
Q9UK453.1e-2858.33U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV... [more]
Q9CQQ81.2e-2757.61U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 S... [more]
Q54HF63.2e-2557.78Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX... [more]
O744993.5e-2454.26U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97... [more]
BLAST of Moc08g09090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DI462.1e-4899.01sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1[more]
A0A6J1A2J03.1e-4797.98sm-like protein LSM7 OS=Herrania umbratica OX=108875 GN=LOC110414310 PE=3 SV=1[more]
A0A061DVC43.1e-4797.98Small nuclear ribonucleoprotein family protein OS=Theobroma cacao OX=3641 GN=TCM... [more]
A0A1U8A7393.1e-4797.98sm-like protein LSM7 OS=Nelumbo nucifera OX=4432 GN=LOC104597434 PE=3 SV=1[more]
A0A2P2J3S83.1e-4797.98Sm domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1[more]
BLAST of Moc08g09090 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G03870.29.8e-4693.62Small nuclear ribonucleoprotein family protein [more]
AT2G03870.19.8e-4693.62Small nuclear ribonucleoprotein family protein [more]
AT2G23930.11.9e-0938.67probable small nuclear ribonucleoprotein G [more]
AT3G11500.14.3e-0936.00Small nuclear ribonucleoprotein family protein [more]
AT2G23930.22.4e-0737.14probable small nuclear ribonucleoprotein G [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..82
e-value: 2.0E-23
score: 93.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..82
e-value: 1.4E-19
score: 69.5
NoneNo IPR availableGENE3D2.30.30.100coord: 1..92
e-value: 3.1E-31
score: 109.4
NoneNo IPR availablePANTHERPTHR10553:SF30BNAA06G33630D PROTEINcoord: 3..97
IPR044641Sm-like protein Lsm7/SmGPANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 3..97
IPR017132Sm-like protein Lsm7CDDcd01729LSm7coord: 5..93
e-value: 9.79759E-61
score: 185.482
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 11..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g09090.1Moc08g09090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:1990726 Lsm1-7-Pat1 complex
cellular_component GO:0120115 Lsm2-8 complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003723 RNA binding