Moc08g09060 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g09060
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionarabinogalactan peptide 23-like
Locationchr8: 6739692 .. 6742600 (+)
RNA-Seq ExpressionMoc08g09060
SyntenyMoc08g09060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAAGAAAATCGCCTGCGCCGTCCTCTTCGCTGCCGCATCCGTCAGCGCCGTCGTGGCCAGCGGTGAGGCGCAGGGTCCGGCACCTGCACCGACAAGCGGCGCCACCGCCGGCCTCCCAGCTCTCGGCTCTCTCATCGGTGCTTCGTTGCTCTCCGTCGCCGCCTACTACTTGTAATAATTTCGAATTGAGCGAGGAGAGATTGGTTAATGAGTTGATAATGTAATGGGAATTTTTTTTTTTTTTATGGGTGTTTATTGTCAGATTTTGTGGAAATAATTTTATGATCAGTAAATAATACATCCTTCTAATTAGTATGTATTTTTCTCTCTCTCTCAAGTTTACGAAAATTATTAGAGCAAATTGTACACATCACCCTAGAGCTTTCAAGTATAAAAATTAAACCCTCATGTTCAAAATAAAAAATAAATTTAAACCCTTTAAATAAACTATTATTATGATTTATAATATGAATACCTTTACGTGTGTCATTCTAGGATTCCATTTCCTAGTACCATGACCAAAATGAACTCCTGCTTCCATCATCTCTTCCAAATGGATGTTCCAATATCTTTTGTCATTTCTCCCCCCACTTCCTCGCTTTTTTTTAAGAAAAAAAAAGAGACGAGAAATAAATAATTGTTCCGATGGAACCTTATCCTCTACCGGAGATTGACTGTTGATACACGATCAAATCAACGCGTATAGTTAACAGGATGACTCCACTTTTATGAAAGGTGGTTTTGTAATTTGTCCAAATTATTATTAAATATTTGAGTAATTATTATTATTATATATTTTTTTTTTTGGAGTTCGACCAACTCACCAACATGCCTTCCAATACTATTGATTCTTTCAACTTGAAGAATAATATTCTTTGAGTCAGAAAGTCTTTTAACTTAGTAAAATGCTAAATTATAAATTTTGTATATATTTATTAAATATTTAATCTATTGATAATCAATATCTATATATTTTATTTTTAATTTTTTATAATCAATATCTATATATACAAACAGGAGTCGTTTTTTTCCCACATATCCCCATTATCCCAATTTTGGTGTTTTATTTTTATAAAATTATAAAATGTCATTAATTTCGTATACATGAACAAGACTATAGAATCATGTAATTATGCACATGAAATTTATTTTCTATAATTTAGTAATCTACCTTTAATCTTCCAAATAAGTCATTTTATAATTTTGGTGATATGAATAGATTATATATTTTTTACTATTCTTTGTGTGTGTGTTTTCTTTAAAGATGGTTCTTTTTGGTTTCTCAAATTGTTTTAGATTTTACACTAAATCAACTTTTTCAAGACATTTAAAATTGTGAAATAAATTGGGGTGAATATTAGATATGAAGAACGAACAAATAAAGGTTACTAGATAAACTTTTTTCTTTGACATTAGATAAGCTACTAATACCAACATAGCTTACTTTTTTCTTTCATTGGATAATATTTAATATCATGCTTCTGTACGAGTTTATATATATATATATTAGTACAATTTAAAAAATACAAATTAATAAGGTGATCGTTTATCAGATTTGTTTGAAATAATTACAAATGTGAACCAAGCCATAATTTAATTGTTTAGATATTAGTAATCACCTTTAAAAGTTTGTTGGTTAAAATTTTCGATCTCGGATTTGAATTACAATACTCCAATAAACAAAAAATAATTTCATTAGTTAATATTCACTCCATGCCTAATAAGGCTTTAGTACAAATTAATTCACACGTTAAAATTTTGTAGATATTTTAATAGTGCCATTTTGATTAAATTTGCTAAAACTTTTTTTCTCATGAAGTCAATTAAAACCAATATTTTTACACACGTCACAATTTCCTTGTGGCATCATATTAATGCAATCAACAAATAACTAAAGTAAATTTACACTCGTTTTAGAGATTGATGTCTCGTAGAACCAATCAAATCTAGCTTTTGTCACAATATATTGAACAAAAACAGAAGCCTTAACAGCGGTCGAATGAGATACAAGCATAAAGATGTAGTAAACACCATGACTACTTGCAAGGAATATTAAATTCCTCCCGAACAATAAAATATGATGACATGAAGCGAAACGTAATTAGTATTGGTGCCTACTTCAAATCTCCCAAGCAAACTTCACTTGCAATAAACCAAGTTGATAATCCTCACCCCATTAATTGAAGAAAAAGTAGTAGCATAAACAAAGAGAATAAGAACTACTGCAGAGGTAGTAGATGATTAGGCTAATCGGGTGAGGACAAGTTGAGGGTCCAAAACTAAAAAGCCCACTTACATAGGGAACAGAGACTTGGAAAAAAGGAAAGGACAAAAAGGGAACTCAGCCTTTTAAATTTGTCACAAGCAAAAGCAAAAGCAAAAGCAAAAGCAAAGCAACAATCATTTCAGTTAAATAAAATCTTCTGCAAAAGCAATTCCCCTGTGTCTGAACCCAGGAGGTGGCTATGGCTGTGGCTGTGGCTTCTTCCAAAATCAACATCTAACAAAACACCTACCATTTCAATGGATCATTTACAACCAAATGGCAAGCATGCATTCCCAAAAAACTTCCATTTTTTTCCCAACTTTTGCTCCTATAAAGACACAAAAACCCACTCTTGAAAACATACAATTAGCTCAAGTGGAGGGGTTTTGTATTGTACCTAAAGATTTTGCTCTTCAATGGCTTCCATGAGACTCCCCACTTTTGCTGCTGCTGCTGCTGCTTTTGCTTTGGTCCTTGTAATGGTGGGCTGCTTAGAGATGGAGGTCCATGCCATTGAGGATGAGATGGCTCCAATGCCTGCCATGGCTGCTGCTGCTGGCTCTGCATTTCCTTCTTCTGTTGCCTTTGCTCTCAATTCTGTATTTTCTATTTTGCTCTGTATTTTTGGTGTCTAG

mRNA sequence

ATGGAGATGAAGAAAATCGCCTGCGCCGTCCTCTTCGCTGCCGCATCCGTCAGCGCCGTCGTGGCCAGCGGTGAGGCGCAGGGTCCGGCACCTGCACCGACAAGCGGCGCCACCGCCGGCCTCCCAGCTCTCGGCTCTCTCATCGGTGCTTCGTTGCTCTCCGTCGCCGCCTACTACTTACTCCCCACTTTTGCTGCTGCTGCTGCTGCTTTTGCTTTGGTCCTTGTAATGGTGGGCTGCTTAGAGATGGAGGTCCATGCCATTGAGGATGAGATGGCTCCAATGCCTGCCATGGCTGCTGCTGCTGGCTCTGCATTTCCTTCTTCTGTTGCCTTTGCTCTCAATTCTGTATTTTCTATTTTGCTCTGTATTTTTGGTGTCTAG

Coding sequence (CDS)

ATGGAGATGAAGAAAATCGCCTGCGCCGTCCTCTTCGCTGCCGCATCCGTCAGCGCCGTCGTGGCCAGCGGTGAGGCGCAGGGTCCGGCACCTGCACCGACAAGCGGCGCCACCGCCGGCCTCCCAGCTCTCGGCTCTCTCATCGGTGCTTCGTTGCTCTCCGTCGCCGCCTACTACTTACTCCCCACTTTTGCTGCTGCTGCTGCTGCTTTTGCTTTGGTCCTTGTAATGGTGGGCTGCTTAGAGATGGAGGTCCATGCCATTGAGGATGAGATGGCTCCAATGCCTGCCATGGCTGCTGCTGCTGGCTCTGCATTTCCTTCTTCTGTTGCCTTTGCTCTCAATTCTGTATTTTCTATTTTGCTCTGTATTTTTGGTGTCTAG

Protein sequence

MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYLLPTFAAAAAAFALVLVMVGCLEMEVHAIEDEMAPMPAMAAAAGSAFPSSVAFALNSVFSILLCIFGV
Homology
[Close]
BLAST of Moc08g09060 vs. NCBI nr
Match: KAG7019275.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.8 bits (216), Expect = 7.3e-14
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEMKKI CA+LFAAA+VSAVVA  EA  PAP PTSGATAGLPA+GSLIGASLLSVAAYYL
Sbjct: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60

[Close]
BLAST of Moc08g09060 vs. NCBI nr
Match: XP_022998512.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 84.3 bits (207), Expect = 8.0e-13
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEM KI CA+LFAAA+VSAVVA  EA  PAP PTSGAT GLPA+GSLIGASLLSVAAYYL
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

[Close]
BLAST of Moc08g09060 vs. NCBI nr
Match: XP_022983304.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-12
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEMKKIACAVLFAAA+VSAVVA  EA  PAP P+SGA AGLPA+GS IGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60

[Close]
BLAST of Moc08g09060 vs. NCBI nr
Match: KAG7036581.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYY 60
          MEMKKI CA+LFAAA+VSAVVA  EA  PAP PTSGATAGLPA+ SLIGASLLSVAAYY
Sbjct: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAISSLIGASLLSVAAYY 59

[Close]
BLAST of Moc08g09060 vs. NCBI nr
Match: XP_022932375.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >XP_022965239.1 arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-12
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEMKKI CAVLFAAA+V+A VA  EA  PAP PTS AT GLPA+GSLIGASLLSVAAYYL
Sbjct: 1  MEMKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYL 60

[Close]
BLAST of Moc08g09060 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEMKKIAC VLFAAAS++AV+A+ E   PAP P S A+A LPALGSL+GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]
BLAST of Moc08g09060 vs. ExPASy TrEMBL
Match: A0A6J1K873 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEM KI CA+LFAAA+VSAVVA  EA  PAP PTSGAT GLPA+GSLIGASLLSVAAYYL
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

[Close]
BLAST of Moc08g09060 vs. ExPASy TrEMBL
Match: A0A6J1J6Y9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.1e-13
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEMKKIACAVLFAAA+VSAVVA  EA  PAP P+SGA AGLPA+GS IGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60

[Close]
BLAST of Moc08g09060 vs. ExPASy TrEMBL
Match: A0A6J1HQG2 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEMKKI CAVLFAAA+V+A VA  EA  PAP PTS AT GLPA+GSLIGASLLSVAAYYL
Sbjct: 1  MEMKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYL 60

[Close]
BLAST of Moc08g09060 vs. ExPASy TrEMBL
Match: A0A6J1F209 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438746 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEMKKI CAVLFAAA+V+A VA  EA  PAP PTS AT GLPA+GSLIGASLLSVAAYYL
Sbjct: 1  MEMKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYL 60

[Close]
BLAST of Moc08g09060 vs. ExPASy TrEMBL
Match: A0A0A0L9U8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEMKKIACAVLFAAA+V+AVVA+ EA  PAP P+SGA  G+PA+GSL+GASLLS AAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

[Close]
BLAST of Moc08g09060 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 70.9 bits (172), Expect = 8.6e-13
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAPTSGATAGLPALGSLIGASLLSVAAYYL 60
          MEMKKIAC VLFAAAS++AV+A+ E   PAP P S A+A LPALGSL+GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]
BLAST of Moc08g09060 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-10
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MEMKKIACAVLFAAASVSAVVASGEAQGPAPAP-TSGATAGLPALGSLIGASLLSVAAYY 60
          MEMKKIAC V+FAAAS++AV+A+ E   PAP P  SGA+  +PALGSL+GASL+S+ AYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYY 60

The following BLAST results are available for this feature:
BLAST of Moc08g09060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019275.17.3e-1485.00Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022998512.18.0e-1381.67arabinogalactan peptide 23-like [Cucurbita maxima][more]
XP_022983304.11.0e-1283.33arabinogalactan peptide 23-like [Cucurbita maxima][more]
KAG7036581.11.4e-1283.05Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022932375.12.3e-1280.00arabinogalactan peptide 23-like [Cucurbita moschata] >XP_022965239.1 arabinogala... [more]
BLAST of Moc08g09060 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8S2W41.2e-1168.33Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
BLAST of Moc08g09060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K8733.9e-1381.67arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4... [more]
A0A6J1J6Y95.1e-1383.33arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4... [more]
A0A6J1HQG21.1e-1280.00arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4... [more]
A0A6J1F2091.1e-1280.00arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438746 PE... [more]
A0A0A0L9U81.3e-1176.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1[more]
BLAST of Moc08g09060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G57690.18.6e-1368.33arabinogalactan protein 23 [more]
AT2G41905.13.0e-1065.57BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 1..60
NoneNo IPR availablePANTHERPTHR34672:SF2ARABINOGALACTAN PROTEIN 23coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g09060.1Moc08g09060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane