Moc08g09040 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g09040
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA-directed RNA polymerase subunit
Location	chr8: 6736743 .. 6738794 (-)
RNA-Seq Expression	Moc08g09040
Synteny	Moc08g09040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCTGTCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGAAAATCTTCCAGATTCTTCTGCCCGACTTGTCCTTATGTGTGCCACTTGGAGAATAGGGTATGTGATGCCGAAATTTCTTTAGCTTCTTTGTTTGCGCCTCTTAGTTTCTTATGTGGTGATCTTAAGGAGTGCATTATCGTTGTTCTACCATTCAGGTAAAGATCAAAAGAAAGCAGCATTTGATAAAGAAGGAATTAGAACCCATAATCTCTGATGAGGATATGAAAAATGCAGCTCAAACTGAAGGTACACATTTTTCCTTCTAGTTATTAATTTACCCTTCTGTGCTCAGTTCTTTGTTTTCCTTTAAGTTTTTACCTGCTGGAGTTAGACAAAAGATTTAATCAGCTCCAACCGAAGGACACACCAATTGAGCTAGAGGAACAATAATAAATTTGCGCTTGGGATAACTAGGTTAGATTGACGGATGTTGAAGAGAAGGATAGACAACATGAAAACTTTGCACTTTTTAGGGAAGCTTTGACTTCCAAAATCCTCTTACACCAACCAATTGGGATAAGTTCCGGTCTGGGGACAATGGATCAATAAAGATAGTTGACTGAGAGAAACCCTGAAGTAGTGATATTCTATTTTTTTGTAAATATTAGAGACTGAGAAAATATATTGAACAAAAGAGAAGGGGAAACAGCCTAAGGGGCAGGGTAGAGGGAACCCGTTAAGAGAACTAGCCCAAAAAAGCCTTCCAATCATCTACGGTCATAAGGAGGCAGACTACAGTTACAAAATAATTTAGTATGCGGCATCATATTCTAGAATCTTTTTTGAGGGAATCATGGATGGCTAAATGACCGGCAACTCCTGTATTTACCTGCAGAAAGGTCCTCCTCTTAACCTCAAATTACAGTAAAGGATATCTGTATTTGTCTTTCACTGAAATATCCTTAGATAAGGGGTTTATCGTTGGTTATAAATAAATTGGATTGGAGGGGTTAGGGTTGAGTGAAGTTTGGAAATAGTTTTGCTGGAGAGAGAACCCTTTTGCAACATAATTTCGGCCTATTTTCTTAATTTTCCAATATCAAGTTCCTCCGTGAACCTTTCTAAAACCTAACAGAAGCACCATCACCTAGTTGAGAAGTCGCACTTCGTTTGGTAAGGGGGGCTAACTTTTCAACAGACTTCCAAGGGCTTTTACCCAAAGCTAAGAGCAAATCCAAAATTAAGTGGCCATATTATTCTCTCCCATTTTTTCTAATAATTTCGTGCGAAGGAAAATTTGGTCTAGCCCTTAAGGGCGTAACTAGATGACTACCACCTTATTCTGACCCTCCCAAAATAAGTTTCAGTCTTTCAGATGTATCTCTCAATTTTTGCAATTGCAGCAACTTTGTTGGAAACTTTAACAGTGAAAGATACTATAGGAGGAAATTAGTAAGAGGTCTAGAGCCAACGTAAGACGCCCATCACCCTCCCTTAGCAATGGGGGCTGCATTCCTCTTTATCAATTTATAAATTAGTTCTTGCCCCTGCCCTTTTGATATAAACAAGAAATAGGAATAGTTACCAAATACTTATGGTTCTTAAAAATTGGAAATAAGAAACATGAAACCCAAACGACCGTAGATAATTTAATTCCATGGACTTAGATGGTTCACAACCTGTAAAATATTTTATGAGAGGAAAAAAAAACTTTGCAGTCTATGAACTCGTTTTGATTTTCTTTCCATAATAATGAATAATACGGTGATCTATTGAAAAATATATATAAAAAGAATATGGTGGTCTATTTTTGAAAGTTGTAGGCACAGCCTGCATAACTTGTTATTTCTTTTTTTCTGAATAGATGTAAAGAATTAGGCATAACTTTTTCTTTTCTTTTCTAAATGTTCTCCCCATTATGTAGCAACGTGTCCAAATTGTGCGTTTGGTAAGGCTGCTTTTATACAAGTACAACTGAGATCGGCTGATGAACCTGCTACAACTTTTTACAAATGCATGAACGAGGACTGCAGAATTAATTGGCGCGAGGATTAA

mRNA sequence

ATGGAGTTCTGTCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGAAAATCTTCCAGATTCTTCTGCCCGACTTGTCCTTATGTGTGCCACTTGGAGAATAGGGTAAAGATCAAAAGAAAGCAGCATTTGATAAAGAAGGAATTAGAACCCATAATCTCTGATGAGGATATGAAAAATGCAGCTCAAACTGAAGCAACGTGTCCAAATTGTGCGTTTGGTAAGGCTGCTTTTATACAAGTACAACTGAGATCGGCTGATGAACCTGCTACAACTTTTTACAAATGCATGAACGAGGACTGCAGAATTAATTGGCGCGAGGATTAA

Coding sequence (CDS)

ATGGAGTTCTGTCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGAAAATCTTCCAGATTCTTCTGCCCGACTTGTCCTTATGTGTGCCACTTGGAGAATAGGGTAAAGATCAAAAGAAAGCAGCATTTGATAAAGAAGGAATTAGAACCCATAATCTCTGATGAGGATATGAAAAATGCAGCTCAAACTGAAGCAACGTGTCCAAATTGTGCGTTTGGTAAGGCTGCTTTTATACAAGTACAACTGAGATCGGCTGATGAACCTGCTACAACTTTTTACAAATGCATGAACGAGGACTGCAGAATTAATTGGCGCGAGGATTAA

Protein sequence

MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED

Homology

[Close]

BLAST of Moc08g09040 vs. NCBI nr
Match: XP_022152562.1 (DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia])

HSP 1 Score: 243.8 bits (621), Expect = 6.9e-61
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 111

[Close]

BLAST of Moc08g09040 vs. NCBI nr
Match: XP_022152387.1 (DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152388.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152389.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152390.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152392.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia])

HSP 1 Score: 233.8 bits (595), Expect = 7.2e-58
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           MK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCMNE+CR NWRED
Sbjct: 61  MKTAAQTEATCPNCAFGKAAFIQLQLRSADEPATTFYKCMNENCRHNWRED 111

[Close]

BLAST of Moc08g09040 vs. NCBI nr
Match: XP_038903069.1 (DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida])

HSP 1 Score: 231.1 bits (588), Expect = 4.6e-57
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           MKNAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCMNE+CR NWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED 111

[Close]

BLAST of Moc08g09040 vs. NCBI nr
Match: XP_004141147.1 (DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >XP_008465338.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >KGN59770.1 hypothetical protein Csa_002120 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 4.6e-57
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           MKNAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCMNE+CR NWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]

BLAST of Moc08g09040 vs. NCBI nr
Match: KAG6597716.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.9 bits (585), Expect = 1.0e-56
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 38  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 97

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           MKNAAQTEATCPNC FGKAAFIQ+QLRSADEPA+TFYKCMNEDCR NWRED
Sbjct: 98  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 148

[Close]

BLAST of Moc08g09040 vs. ExPASy Swiss-Prot
Match: O13896 (DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc11 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.3e-17
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           M+FCPTCGN L   +   G+++ F C TCPY  H      +  +    +KE++ ++  E+
Sbjct: 1   MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY--HFPISTFLYSRHEFAQKEVDDVLGGEE 60

Query: 61  -MKNAAQTEATCPN--CAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
             ++  QTE TC N  C   +A F Q+Q+RSADEP +TFY+C    C+  WRE+
Sbjct: 61  AFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTK--CKFQWREN 109

[Close]

BLAST of Moc08g09040 vs. ExPASy Swiss-Prot
Match: Q9Y2Y1 (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K PE=1 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-16
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 3   FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISD-EDM 62
           FCP CGN L  E     +  RF C TCPYV ++  +V  ++   L  KE++ ++      
Sbjct: 4   FCPGCGNGLIVE--EGQRCHRFSCNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 63

Query: 63  KNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRE 111
           +N   T  +CP C   +A F+Q+Q RSADEP TTFYKC N  C   WR+
Sbjct: 64  ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]

BLAST of Moc08g09040 vs. ExPASy Swiss-Prot
Match: Q9CQZ7 (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-16
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 3   FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISD-EDM 62
           FCP CGN L  E     +  RF C TCPYV ++  +V  ++   L  KE++ ++      
Sbjct: 4   FCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 63

Query: 63  KNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRE 111
           +N   T   CP C   +A F+Q+Q RSADEP TTFYKC N  C   WR+
Sbjct: 64  ENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]

BLAST of Moc08g09040 vs. ExPASy Swiss-Prot
Match: Q2M2S7 (DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-15
Identity = 45/108 (41.67%), Postives = 55/108 (50.93%), Query Frame = 0


Query: 3   FCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDEDMK 62
           FCP CGN L  E     +  RF C TCPYV H   R    RK   +K+  + +      +
Sbjct: 4   FCPGCGNGLIVE--EGQRCHRFACNTCPYV-HNVTRKVTNRKYPKLKEVDDELGGAAAWE 63

Query: 63  NAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRE 111
           N   T   CP C   +A F+Q+Q R ADEP TTFYKC N  C   WR+
Sbjct: 64  NVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108

[Close]

BLAST of Moc08g09040 vs. ExPASy Swiss-Prot
Match: Q04307 (DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC11 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-14
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           + FCP+C NML     + G  +   C +CPY   +E  ++I  ++ L +KE++ ++    
Sbjct: 2   LSFCPSCNNMLLITSGDSGVYT-LACRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLGG-G 61

Query: 61  MKNAAQTEATCPN---CAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
             N  QT+  CPN   C    A F Q+Q+RSADEP TTFYKC+N  C   W+E+
Sbjct: 62  WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVN--CGHRWKEN 110

[Close]

BLAST of Moc08g09040 vs. ExPASy TrEMBL
Match: A0A6J1DGL3 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020260 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.4e-61
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 111

[Close]

BLAST of Moc08g09040 vs. ExPASy TrEMBL
Match: A0A6J1DDT5 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020128 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.5e-58
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           MK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCMNE+CR NWRED
Sbjct: 61  MKTAAQTEATCPNCAFGKAAFIQLQLRSADEPATTFYKCMNENCRHNWRED 111

[Close]

BLAST of Moc08g09040 vs. ExPASy TrEMBL
Match: A0A1S3CQ50 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.3e-57
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           MKNAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCMNE+CR NWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]

BLAST of Moc08g09040 vs. ExPASy TrEMBL
Match: A0A0A0LCM4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.3e-57
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           MKNAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCMNE+CR NWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]

BLAST of Moc08g09040 vs. ExPASy TrEMBL
Match: A0A6J1IB59 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.0e-57
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           MKNAAQTEATCPNC FGKAAFIQ+QLRSADEPA+TFYKCMNEDCR NWRED
Sbjct: 61  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]

BLAST of Moc08g09040 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-33
Identity = 61/111 (54.95%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGN+L++E    G SSRFFC TCPYV ++E RV+IK+KQ L+KK +EP+++ +D
Sbjct: 1   MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           +  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+   C   WRE+
Sbjct: 61  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLK--CEFTWREE 106

[Close]

BLAST of Moc08g09040 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 57/111 (51.35%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60
           MEFCPTCGN+L++E    G +SRFFC TCPYV +++ +V+IK+KQ L+KK +E +++ +D
Sbjct: 1   MEFCPTCGNLLRYE---GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 112
           +  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+   C   WRE+
Sbjct: 61  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLK--CEFTWREE 106

[Close]

BLAST of Moc08g09040 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 40.8 bits (94), Expect = 8.3e-04
Identity = 18/46 (39.13%), Postives = 26/46 (56.52%), Query Frame = 0


Query: 64  AAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWR 110
           A+  +  C  C   K  + Q+Q RSADEP TT+  C+N  C  +W+
Sbjct: 333 ASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVN--CDNHWK 376

The following BLAST results are available for this feature:

BLAST of Moc08g09040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152562.1	6.9e-61	100.00	DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]	[more]
XP_022152387.1	7.2e-58	94.59	DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022...	[more]
XP_038903069.1	4.6e-57	93.69	DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]	[more]
XP_004141147.1	4.6e-57	93.69	DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 ...	[more]
KAG6597716.1	1.0e-56	92.79	DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s...	[more]

BLAST of Moc08g09040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13896	8.3e-17	39.47	DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (stra...	[more]
Q9Y2Y1	1.4e-16	41.28	DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K ...	[more]
Q9CQZ7	2.4e-16	41.28	DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k...	[more]
Q2M2S7	1.6e-15	41.67	DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE...	[more]
Q04307	1.0e-14	38.60	DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strai...	[more]

BLAST of Moc08g09040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGL3	3.4e-61	100.00	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110202...	[more]
A0A6J1DDT5	3.5e-58	94.59	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110201...	[more]
A0A1S3CQ50	2.3e-57	93.69	DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3...	[more]
A0A0A0LCM4	2.3e-57	93.69	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 P...	[more]
A0A6J1IB59	5.0e-57	92.79	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 ...	[more]

BLAST of Moc08g09040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G07950.1	1.7e-33	54.95	DNA-directed RNA polymerase, subunit M, archaeal	[more]
AT1G01210.1	1.6e-31	51.35	DNA-directed RNA polymerase, subunit M, archaeal	[more]
AT2G38560.1	8.3e-04	39.13	transcript elongation factor IIS	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 69..110 e-value: 7.8E-13 score: 58.6
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 69..109 e-value: 2.4E-15 score: 56.1
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS00466	ZF_TFIIS_1	coord: 71..108
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 67..109 score: 12.596253
IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	SMART	SM00661	rpol9cneu	coord: 2..56 e-value: 4.2E-8 score: 42.9
IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	PFAM	PF02150	RNA_POL_M_15KD	coord: 1..32 e-value: 9.4E-6 score: 25.4
None	No IPR available	GENE3D	2.20.25.10		coord: 56..111 e-value: 9.0E-18 score: 65.5
None	No IPR available	PANTHER	PTHR11239:SF12	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10	coord: 1..110
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 49..111
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PIRSF	PIRSF005586	RNApol_RpoM	coord: 1..111 e-value: 2.0E-26 score: 90.7
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PANTHER	PTHR11239	DNA-DIRECTED RNA POLYMERASE	coord: 1..110
IPR019761	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	PROSITE	PS01030	RNA_POL_M_15KD	coord: 3..29
IPR034014	Pol III subunit C11, C-terminal zinc ribbon	CDD	cd10509	Zn-ribbon_RPC11	coord: 63..110 e-value: 1.25289E-20 score: 76.085

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g09040.1	Moc08g09040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006386	termination of RNA polymerase III transcription
biological_process	GO:0042779	tRNA 3'-trailer cleavage
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding