Moc08g06400 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g06400
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	F-box family protein
Location	chr8: 4723703 .. 4724155 (+)
RNA-Seq Expression	Moc08g06400
Synteny	Moc08g06400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCGGCCTTTTTCCGGCAATGATTCCGGCAGCAATACGAAGAAGCTGAAGTGGTGGAGGTCAGAGTCGGAGGATGACGCATCCCAAGTCGCTGGGTTGGCGAATTTAGACGACAATCTGTTGTTCGAGGTGCTGAAGCACGTGGATGCGAGGACGCTGGCGACGGCGGCGGGCGTGAGCAAGCAGTGGTACAAGACGGCGCAGGACGAGCGGCTGTGGGAGCTGATCTGCACCAGACACTGGGCTAACCTCGGCTGCGGAAACCAACAGCTACGGTCCGTGGTGCTGGCGCTTGGTGGCTTCCGTCGCTTGCACTCTCTTTACCCGTTTGCGCCAATTATTGGATCCACGCCCTGTAATCGATGGGGGAGGGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCCATTCGCTACTACGAGAAGATGAAATTCAAAAACACACCCACATGA

mRNA sequence

ATGAAGCGGCCTTTTTCCGGCAATGATTCCGGCAGCAATACGAAGAAGCTGAAGTGGTGGAGGTCAGAGTCGGAGGATGACGCATCCCAAGTCGCTGGGTTGGCGAATTTAGACGACAATCTGTTGTTCGAGGTGCTGAAGCACGTGGATGCGAGGACGCTGGCGACGGCGGCGGGCGTGAGCAAGCAGTGGTACAAGACGGCGCAGGACGAGCGGCTGTGGGAGCTGATCTGCACCAGACACTGGGCTAACCTCGGCTGCGGAAACCAACAGCTACGGTCCGTGGTGCTGGCGCTTGGTGGCTTCCGTCGCTTGCACTCTCTTTACCCGTTTGCGCCAATTATTGGATCCACGCCCTGTAATCGATGGGGGAGGGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCCATTCGCTACTACGAGAAGATGAAATTCAAAAACACACCCACATGA

Coding sequence (CDS)

ATGAAGCGGCCTTTTTCCGGCAATGATTCCGGCAGCAATACGAAGAAGCTGAAGTGGTGGAGGTCAGAGTCGGAGGATGACGCATCCCAAGTCGCTGGGTTGGCGAATTTAGACGACAATCTGTTGTTCGAGGTGCTGAAGCACGTGGATGCGAGGACGCTGGCGACGGCGGCGGGCGTGAGCAAGCAGTGGTACAAGACGGCGCAGGACGAGCGGCTGTGGGAGCTGATCTGCACCAGACACTGGGCTAACCTCGGCTGCGGAAACCAACAGCTACGGTCCGTGGTGCTGGCGCTTGGTGGCTTCCGTCGCTTGCACTCTCTTTACCCGTTTGCGCCAATTATTGGATCCACGCCCTGTAATCGATGGGGGAGGGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCCATTCGCTACTACGAGAAGATGAAATTCAAAAACACACCCACATGA

Protein sequence

MKRPFSGNDSGSNTKKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT

Homology

[Close]

BLAST of Moc08g06400 vs. NCBI nr
Match: KAG6598351.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-54
Identity = 105/136 (77.21%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 15  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLW 74
           KK+K    E +      +  ANLDDNLLFEV KHVDARTLATAAGVSKQWYKTA DE LW
Sbjct: 2   KKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLW 61

Query: 75  ELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSL 134
           EL+CT+HWAN+GC NQQLRSVVLALGGFRRLHSLYPF PIIGS  C  WG+DE+HLSLSL
Sbjct: 62  ELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLSL 121

Query: 135 LSIRYYEKMKFKNTPT 151
           LSIRYYEKMKFKN PT
Sbjct: 122 LSIRYYEKMKFKNRPT 137

[Close]

BLAST of Moc08g06400 vs. NCBI nr
Match: XP_023522812.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.9 bits (564), Expect = 3.8e-54
Identity = 106/137 (77.37%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 15  KKLKWWRSESED-DASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERL 74
           KK+K    E +    S  +  ANLDDNLLFEV KHVDARTLATAAGVSKQWYKTA DE L
Sbjct: 2   KKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 61

Query: 75  WELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLS 134
           WEL+CT+HWAN+GC NQQLRSVVLALGGFRRLHSLYPF P+IGS  C  WG+DEVHLSLS
Sbjct: 62  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSLS 121

Query: 135 LLSIRYYEKMKFKNTPT 151
           LLSIRYYEKMKFKN PT
Sbjct: 122 LLSIRYYEKMKFKNRPT 138

[Close]

BLAST of Moc08g06400 vs. NCBI nr
Match: XP_022962352.1 (F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-53
Identity = 103/136 (75.74%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 15  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLW 74
           KK+K    E +      +  ANLDDNLLFEV KHVDARTLATAAGVSKQW KTA DE LW
Sbjct: 2   KKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDEWLW 61

Query: 75  ELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSL 134
           EL+CT+HWAN+GC NQQLRSVVLALGGFRRLHSLYPF PI+GS  C  WG+DE+HLSLSL
Sbjct: 62  ELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLSLSL 121

Query: 135 LSIRYYEKMKFKNTPT 151
           LSIRYYEKMKFKN PT
Sbjct: 122 LSIRYYEKMKFKNRPT 137

[Close]

BLAST of Moc08g06400 vs. NCBI nr
Match: XP_022996700.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 219.2 bits (557), Expect = 2.5e-53
Identity = 103/136 (75.74%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 15  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLW 74
           KK+K    E +      +  ANLDDNLLFEV KHVDARTLATA+GVSKQWYKTA DE LW
Sbjct: 2   KKIKSVSQEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWLW 61

Query: 75  ELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSL 134
           EL+CT+HWAN+GC N QLRSVVLALGGFRRLHSLYPF PIIGS  C  WG+ EVHLSLSL
Sbjct: 62  ELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLSL 121

Query: 135 LSIRYYEKMKFKNTPT 151
           LSIRYYEKMKFKN PT
Sbjct: 122 LSIRYYEKMKFKNRPT 137

[Close]

BLAST of Moc08g06400 vs. NCBI nr
Match: XP_004143017.1 (F-box protein GID2 [Cucumis sativus] >KGN62476.1 hypothetical protein Csa_018769 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 3.6e-52
Identity = 107/139 (76.98%), Postives = 115/139 (82.73%), Query Frame = 0


Query: 15  KKLKWWRSESEDDAS--QVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDER 74
           KK K   ++ E D S  Q +  ANLDDNLLFEV KHVDARTLAT AGVSKQW+KTA DER
Sbjct: 6   KKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDER 65

Query: 75  LWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNR-WGRDEVHLS 134
           LWEL+CT+HW NLGC NQQLRSVVLALGGFRRLHSLYPF P+IG   CN  WG+DEVHLS
Sbjct: 66  LWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIG---CNHPWGKDEVHLS 125

Query: 135 LSLLSIRYYEKMKFKNTPT 151
           LSLLSIRYYEKMKFKN PT
Sbjct: 126 LSLLSIRYYEKMKFKNRPT 141

[Close]

BLAST of Moc08g06400 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-42
Identity = 88/144 (61.11%), Postives = 108/144 (75.00%), Query Frame = 0


Query: 6   SGNDSGSNTKKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWY 65
           +G+      KK+K   S  E++     G +NLD+NL++EVLKHVDA+TLA ++ VSK W+
Sbjct: 11  AGDAHNETNKKMK---STEEEE----IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWH 70

Query: 66  KTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGR 125
           KTAQDERLWELICTRHW N+GCG  QLRSVVLALGGFRRLHSLY + P+    P  R+G+
Sbjct: 71  KTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGK 130

Query: 126 DEVHLSLSLLSIRYYEKMKFKNTP 150
           DE+ L+LSLLSIRYYEKM F   P
Sbjct: 131 DELKLTLSLLSIRYYEKMSFTKRP 146

[Close]

BLAST of Moc08g06400 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-25
Identity = 60/119 (50.42%), Postives = 79/119 (66.39%), Query Frame = 0


Query: 36  NLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSV 95
           +L ++L+FEVL+  +ARTLA AA VS+ W + A+DERLWE  C R WANLG   +QLR+V
Sbjct: 75  DLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAV 134

Query: 96  VLALGGFRRLHSLYPFAPII-----------GSTPCNRWGRDEVHLSLSLLSIRYYEKM 144
           VL+LGGFRRLH++Y   P+               P  R GRD+V LSLSL SI +++ M
Sbjct: 135 VLSLGGFRRLHAVY-IRPLQWRGAGVPRQQGRRQPPVRLGRDQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of Moc08g06400 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.8e-13
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 40  NLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLAL 99
           ++L E+L+ +D  +L +AA V + W   A+++ +WE +C R  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRSVVSAL 92

Query: 100 GGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRYYEKM 144
           GG+R L+ L    P++   P   W RD++ LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Moc08g06400 vs. ExPASy TrEMBL
Match: A0A6J1K7I7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 103/136 (75.74%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 15  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLW 74
           KK+K    E +      +  ANLDDNLLFEV KHVDARTLATA+GVSKQWYKTA DE LW
Sbjct: 2   KKIKSVSQEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWLW 61

Query: 75  ELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSL 134
           EL+CT+HWAN+GC N QLRSVVLALGGFRRLHSLYPF PIIGS  C  WG+ EVHLSLSL
Sbjct: 62  ELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLSL 121

Query: 135 LSIRYYEKMKFKNTPT 151
           LSIRYYEKMKFKN PT
Sbjct: 122 LSIRYYEKMKFKNRPT 137

[Close]

BLAST of Moc08g06400 vs. ExPASy TrEMBL
Match: A0A6J1HCI1 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 103/136 (75.74%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 15  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLW 74
           KK+K    E +      +  ANLDDNLLFEV KHVDARTLATAAGVSKQW KTA DE LW
Sbjct: 2   KKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDEWLW 61

Query: 75  ELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSL 134
           EL+CT+HWAN+GC NQQLRSVVLALGGFRRLHSLYPF PI+GS  C  WG+DE+HLSLSL
Sbjct: 62  ELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLSLSL 121

Query: 135 LSIRYYEKMKFKNTPT 151
           LSIRYYEKMKFKN PT
Sbjct: 122 LSIRYYEKMKFKNRPT 137

[Close]

BLAST of Moc08g06400 vs. ExPASy TrEMBL
Match: A0A0A0LR75 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.7e-52
Identity = 107/139 (76.98%), Postives = 115/139 (82.73%), Query Frame = 0


Query: 15  KKLKWWRSESEDDAS--QVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDER 74
           KK K   ++ E D S  Q +  ANLDDNLLFEV KHVDARTLAT AGVSKQW+KTA DER
Sbjct: 6   KKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDER 65

Query: 75  LWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNR-WGRDEVHLS 134
           LWEL+CT+HW NLGC NQQLRSVVLALGGFRRLHSLYPF P+IG   CN  WG+DEVHLS
Sbjct: 66  LWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIG---CNHPWGKDEVHLS 125

Query: 135 LSLLSIRYYEKMKFKNTPT 151
           LSLLSIRYYEKMKFKN PT
Sbjct: 126 LSLLSIRYYEKMKFKNRPT 141

[Close]

BLAST of Moc08g06400 vs. ExPASy TrEMBL
Match: A0A5A7V5E1 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00620 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.3e-52
Identity = 105/142 (73.94%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 16  KLKWWRSES------EDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQ 75
           K+K ++S+S      ++   Q +  ANLDDNLLFEV KHVDARTLATAAGV+KQW+KTA 
Sbjct: 4   KIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAH 63

Query: 76  DERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNR-WGRDEV 135
           DERLWEL+CT+HW NLGC NQQLRSVVLALGGFRRLHSLYPF P+IG   CN  WG+DEV
Sbjct: 64  DERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIG---CNHPWGKDEV 123

Query: 136 HLSLSLLSIRYYEKMKFKNTPT 151
           HLSLSLLSIRYYEKMKFKN PT
Sbjct: 124 HLSLSLLSIRYYEKMKFKNRPT 142

[Close]

BLAST of Moc08g06400 vs. ExPASy TrEMBL
Match: A0A1S3BDV6 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.3e-52
Identity = 105/142 (73.94%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 16  KLKWWRSES------EDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQ 75
           K+K ++S+S      ++   Q +  ANLDDNLLFEV KHVDARTLATAAGV+KQW+KTA 
Sbjct: 4   KIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFKTAH 63

Query: 76  DERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNR-WGRDEV 135
           DERLWEL+CT+HW NLGC NQQLRSVVLALGGFRRLHSLYPF P+IG   CN  WG+DEV
Sbjct: 64  DERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIG---CNHPWGKDEV 123

Query: 136 HLSLSLLSIRYYEKMKFKNTPT 151
           HLSLSLLSIRYYEKMKFKN PT
Sbjct: 124 HLSLSLLSIRYYEKMKFKNRPT 142

[Close]

BLAST of Moc08g06400 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-43
Identity = 88/144 (61.11%), Postives = 108/144 (75.00%), Query Frame = 0


Query: 6   SGNDSGSNTKKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWY 65
           +G+      KK+K   S  E++     G +NLD+NL++EVLKHVDA+TLA ++ VSK W+
Sbjct: 11  AGDAHNETNKKMK---STEEEE----IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWH 70

Query: 66  KTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGR 125
           KTAQDERLWELICTRHW N+GCG  QLRSVVLALGGFRRLHSLY + P+    P  R+G+
Sbjct: 71  KTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGK 130

Query: 126 DEVHLSLSLLSIRYYEKMKFKNTP 150
           DE+ L+LSLLSIRYYEKM F   P
Sbjct: 131 DELKLTLSLLSIRYYEKMSFTKRP 146

[Close]

BLAST of Moc08g06400 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-14
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 40  NLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLAL 99
           ++L E+L+ +D  +L +AA V + W   A+++ +WE +C R  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRSVVSAL 92

Query: 100 GGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRYYEKM 144
           GG+R L+ L    P++   P   W RD++ LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

The following BLAST results are available for this feature:

BLAST of Moc08g06400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598351.1	1.0e-54	77.21	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322....	[more]
XP_023522812.1	3.8e-54	77.37	F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box prote...	[more]
XP_022962352.1	2.5e-53	75.74	F-box protein GID2-like [Cucurbita moschata]	[more]
XP_022996700.1	2.5e-53	75.74	F-box protein GID2-like [Cucurbita maxima]	[more]
XP_004143017.1	3.6e-52	76.98	F-box protein GID2 [Cucumis sativus] >KGN62476.1 hypothetical protein Csa_018769...	[more]

BLAST of Moc08g06400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	2.7e-42	61.11	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	6.6e-25	50.42	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	5.8e-13	37.50	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Moc08g06400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7I7	1.2e-53	75.74	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1	[more]
A0A6J1HCI1	1.2e-53	75.74	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1	[more]
A0A0A0LR75	1.7e-52	76.98	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 ...	[more]
A0A5A7V5E1	2.3e-52	73.94	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BDV6	2.3e-52	73.94	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1	[more]

BLAST of Moc08g06400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	1.9e-43	61.11	F-box family protein	[more]
AT5G48170.1	4.1e-14	37.50	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 37..77 e-value: 4.2E-4 score: 29.6
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 35..78 e-value: 8.4E-8 score: 31.9
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 31..77 score: 9.841896
None	No IPR available	GENE3D	1.20.1280.50		coord: 18..125 e-value: 9.0E-12 score: 46.8
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 11..109 coord: 111..146
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 11..109
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 111..146
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 27..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g06400.1	Moc08g06400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding