Moc08g05120 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g05120
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Replication factor C subunit 4
Location	chr8: 3700371 .. 3701834 (+)
RNA-Seq Expression	Moc08g05120
Synteny	Moc08g05120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAGTCACACTCCCATGGCGGGAACCCAAACCTTCCACAACCTTCTCTTCTTGCATTCAGTGTGATTCCTTCTCCAGATTTCCTATCATCTAATGGCGCACTGTTGTTTTGCATTGCTTTGAATCATCACCGCAAAATTTCCAGAGCCATCAGAGCCTGTGGGCTGCCTGTTGAGGTTAGTTATCTCGGGTTTGTTTTTCAATTCTATTTTATCGGTCACGAAACTGATTAATCCGATTTGTATTTAATCCGTCCGCCAAATATCCGCGATGGGTTTTCCCAGATAATATGTGAATTTAGGGCCGATTAGTCCAGTTCGAAAAATGAAGACAATCAATCCGCCTTGGTGAGAGCAATGTACATGTCGATTTATCTTTTTTGATAAAAGCAGTGTTCGAATTTCTCTTCGCAACCTAACCATATTTTTCTCTTCGATTGTTGGTTGTACAGTGTCCTTACACGCGCTTCTATGGATCGCCTGGTACCAGAAAAACCACCATTTCACTCGCGATTTACCATCAGCTAGGTCAATTGTTACTGTTTTTGAGGCGGTAATAAATTTATGTTTGTTAGTTCAGAAACCCTTTTCAAAAGTCTCTTGGATTCTCTGCGTTGAGGTTTCTCTTGTTTTGAGGAGGTTGCAAAATTTGTTGGATGTTTTAGAATCATTGCTAAGAGATATCTTGGATTGTATGCATTGAGGGGAAGTTAGGTGGGGAATTAGGTTTTTGAATCTAAAAATATTTTATAGCCTCACCATCATGATGATTAAATGCTAGTTATCAGGAGTCGTGAAGGCTTTTGCTTAAAGCATCCATGATTTCTTGTTACACAATGAAACCCTTCAACCTACTTTTATTATTAAAATGTCCAAACATTTGTATTTGAAAGATCTTTTAAGAAGTTTCTATCTGATATATAAAATGTTTTTTGTAGCCCAAAACTTTACGAGTCCAGAGTTTTGGAGTTGAATGTAAATGGTGATTACTGCAAGGTAAATATTGTTTGGACTGAGATCAAAACCTTTTTGGTGTTGCAGTAGGCAATGGCTAGCTTCAATGGTAATTCTATTAATCTTAGTTACTATTTTTATAATATTCCCTTTATTAGTGCAATTTTATTTTTTTTATTATTATTAAATATAGGGTTATCTTTGTTCATTAGTCAAGATAATCATTCTCGATGATGCTGGTTCAATGACTGAAGCTACTCAGGTGTGGTCAGTCTACATATGATCTGTTTTCTTAATTAGAATTACCATGAACTTATGTATAATTAATTTTGTTTTCTTTCATTTTGTTAAGTATAATGAATTTTGTTTCACTTTGTAATTCTTAGTTTGAAGTCCATTTTGGTTGCTTAGCCTCAAGTCGGAGTAGGCGGAGGGACGACTAATATGAAGATTGGTGCTGAACGCGTGGCCGCTCTGTCTATGTCTCGATATCCCATTCCCATCTGA

mRNA sequence

ATGGCTCAGTCACACTCCCATGGCGGGAACCCAAACCTTCCACAACCTTCTCTTCTTGCATTCAGTGTGATTCCTTCTCCAGATTTCCTATCATCTAATGGCGCACTGTTGTTTTGCATTGCTTTGAATCATCACCGCAAAATTTCCAGAGCCATCAGAGCCTGTGGGCTGCCTGTTGAGTGTCCTTACACGCGCTTCTATGGATCGCCTGGTACCAGAAAAACCACCATTTCACTCGCGATTTACCATCAGCTAGGTCAATTGTTACTGTTTTTGAGGCGCCCAAAACTTTACGAGTCCAGAGTTTTGGAGTTGAATGTAAATGGTGATTACTGCAAGGGTTATCTTTGTTCATTAGTCAAGATAATCATTCTCGATGATGCTGGTTCAATGACTGAAGCTACTCAGCCTCAAGTCGGAGTAGGCGGAGGGACGACTAATATGAAGATTGGTGCTGAACGCGTGGCCGCTCTGTCTATGTCTCGATATCCCATTCCCATCTGA

Coding sequence (CDS)

ATGGCTCAGTCACACTCCCATGGCGGGAACCCAAACCTTCCACAACCTTCTCTTCTTGCATTCAGTGTGATTCCTTCTCCAGATTTCCTATCATCTAATGGCGCACTGTTGTTTTGCATTGCTTTGAATCATCACCGCAAAATTTCCAGAGCCATCAGAGCCTGTGGGCTGCCTGTTGAGTGTCCTTACACGCGCTTCTATGGATCGCCTGGTACCAGAAAAACCACCATTTCACTCGCGATTTACCATCAGCTAGGTCAATTGTTACTGTTTTTGAGGCGCCCAAAACTTTACGAGTCCAGAGTTTTGGAGTTGAATGTAAATGGTGATTACTGCAAGGGTTATCTTTGTTCATTAGTCAAGATAATCATTCTCGATGATGCTGGTTCAATGACTGAAGCTACTCAGCCTCAAGTCGGAGTAGGCGGAGGGACGACTAATATGAAGATTGGTGCTGAACGCGTGGCCGCTCTGTCTATGTCTCGATATCCCATTCCCATCTGA

Protein sequence

MAQSHSHGGNPNLPQPSLLAFSVIPSPDFLSSNGALLFCIALNHHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVLELNVNGDYCKGYLCSLVKIIILDDAGSMTEATQPQVGVGGGTTNMKIGAERVAALSMSRYPIPI

Homology

[Close]

BLAST of Moc08g05120 vs. NCBI nr
Match: XP_020697924.2 (LOW QUALITY PROTEIN: replication factor C subunit 2-like, partial [Dendrobium catenatum])

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-09
Identity = 45/117 (38.46%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 42  LNHHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESR 101
           + H  ++ R +        CP+  FYG PGT KTT +LAI HQ       L  P+LY+SR
Sbjct: 16  VTHQEEVIRILANTLETANCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSR 75

Query: 102 VLELNVNGDY----------------------CKGYLCSLVKIIILDDAGSMTEATQ 137
           VLELN + D+                        GY+C   KIIILD+A SMTE  Q
Sbjct: 76  VLELNASDDHGINVVRTKIKDFAAVAIGSGNRQGGYVCPPYKIIILDEADSMTEDAQ 125

[Close]

BLAST of Moc08g05120 vs. NCBI nr
Match: NP_001185061.1 (ATPase family associated with various cellular activities (AAA) [Arabidopsis thaliana] >AEE30142.1 ATPase family associated with various cellular activities (AAA) [Arabidopsis thaliana])

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-08
Identity = 45/115 (39.13%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +       +CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVL 84

Query: 104 ELNVNGD----------------------YCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN + D                         GY C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 132

[Close]

BLAST of Moc08g05120 vs. NCBI nr
Match: KAG7592536.1 (Replication factor C C-terminal [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7597856.1 Replication factor C C-terminal [Arabidopsis suecica])

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-08
Identity = 45/115 (39.13%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +       +CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVL 84

Query: 104 ELNVNGD----------------------YCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN + D                         GY C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 132

[Close]

BLAST of Moc08g05120 vs. NCBI nr
Match: XP_020674382.1 (replication factor C subunit 2 [Dendrobium catenatum])

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-08
Identity = 45/115 (39.13%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +        CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLANTLETANCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVL 84

Query: 104 ELNV----------------------NGDYCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN                       +G+   GY+C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSGNRQGGYVCPPYKIIILDEADSMTEDAQ 132

[Close]

BLAST of Moc08g05120 vs. NCBI nr
Match: KAG6435924.1 (hypothetical protein SASPL_100805 [Salvia splendens])

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-08
Identity = 46/117 (39.32%), Postives = 55/117 (47.01%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +        CP+  FYG PGT KTT +LAI HQ       L  P LY+SRVL
Sbjct: 25  HQEEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQ-------LYGPGLYKSRVL 84

Query: 104 ELNVNGD---------------------YCKGYLCSLVKIIILDDAGSMTEATQPQV 140
           ELN + D                     +  GY C   KIIILD+A SMTE  Q  V
Sbjct: 85  ELNASDDRGINVVRTKIKNFAAVAVGTAHQGGYPCPPYKIIILDEADSMTEDAQASV 134

[Close]

BLAST of Moc08g05120 vs. ExPASy Swiss-Prot
Match: Q93ZX1 (Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 45/115 (39.13%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +       +CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVL 84

Query: 104 ELNVNGD----------------------YCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN + D                         GY C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 132

[Close]

BLAST of Moc08g05120 vs. ExPASy Swiss-Prot
Match: Q9FXM3 (Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-10
Identity = 43/114 (37.72%), Postives = 54/114 (47.37%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +       + P+  FYG PGT KTT +LAI +Q       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQ-------LYGPELYKSRVL 84

Query: 104 ELNVNGD---------------------YCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN + D                        GY C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQ 131

[Close]

BLAST of Moc08g05120 vs. ExPASy Swiss-Prot
Match: Q09843 (Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rfc2 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-06
Identity = 37/95 (38.95%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 62  PYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVLELNVNGD----------- 121
           P+  FYGSPGT KT+  LA+  +       L  P+L +SRVLELN + +           
Sbjct: 53  PHMLFYGSPGTGKTSTILALSRE-------LFGPQLMKSRVLELNASDERGISIIREKVK 112

Query: 122 -YCK--------GYLCSLVKIIILDDAGSMTEATQ 137
            + K        GY C   KIIILD+A SMT+  Q
Sbjct: 113 SFAKTTVTNKVDGYPCPPFKIIILDEADSMTQDAQ 140

[Close]

BLAST of Moc08g05120 vs. ExPASy Swiss-Prot
Match: P35249 (Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 35/98 (35.71%), Postives = 43/98 (43.88%), Query Frame = 0


Query: 60  ECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVLELN------------- 119
           + P   FYG PGT KT+  LA   +       L  P+L+  RVLELN             
Sbjct: 70  DLPNLLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLELNASDERGIQVVREK 129

Query: 120 --------VNGDYCKGYLCSLVKIIILDDAGSMTEATQ 137
                   V+G    G  C   KI+ILD+A SMT A Q
Sbjct: 130 VKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQ 160

[Close]

BLAST of Moc08g05120 vs. ExPASy Swiss-Prot
Match: Q99J62 (Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 35/98 (35.71%), Postives = 43/98 (43.88%), Query Frame = 0


Query: 60  ECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVLELN------------- 119
           + P   FYG PGT KT+  LA   +       L  P+L+  RVLELN             
Sbjct: 70  DLPNLLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLELNASDERGIQVVREK 129

Query: 120 --------VNGDYCKGYLCSLVKIIILDDAGSMTEATQ 137
                   V+G    G  C   KI+ILD+A SMT A Q
Sbjct: 130 VKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQ 160

[Close]

BLAST of Moc08g05120 vs. ExPASy TrEMBL
Match: A0A178WH05 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g22770 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 45/115 (39.13%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +       +CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVL 84

Query: 104 ELNVNGD----------------------YCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN + D                         GY C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 132

[Close]

BLAST of Moc08g05120 vs. ExPASy TrEMBL
Match: D7KKT1 (EMB1968 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_472407 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 45/115 (39.13%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +       +CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVL 84

Query: 104 ELNVNGD----------------------YCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN + D                         GY C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 132

[Close]

BLAST of Moc08g05120 vs. ExPASy TrEMBL
Match: F4HY43 (ATPase family associated with various cellular activities (AAA) OS=Arabidopsis thaliana OX=3702 GN=EMB1968 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 45/115 (39.13%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +       +CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVL 84

Query: 104 ELNVNGD----------------------YCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN + D                         GY C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 132

[Close]

BLAST of Moc08g05120 vs. ExPASy TrEMBL
Match: A0A2I0X2V9 (AAA domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca022569 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 45/115 (39.13%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +        CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLANTLETANCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVL 84

Query: 104 ELNV----------------------NGDYCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN                       +G+   GY+C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSGNRQGGYVCPPYKIIILDEADSMTEDAQ 132

[Close]

BLAST of Moc08g05120 vs. ExPASy TrEMBL
Match: A0A4D9BXZ0 (Replication factor C subunit 2/4 OS=Salvia splendens OX=180675 GN=RFC2_4 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 46/117 (39.32%), Postives = 55/117 (47.01%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +        CP+  FYG PGT KTT +LAI HQ       L  P LY+SRVL
Sbjct: 25  HQEEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQ-------LYGPGLYKSRVL 84

Query: 104 ELNVNGD---------------------YCKGYLCSLVKIIILDDAGSMTEATQPQV 140
           ELN + D                     +  GY C   KIIILD+A SMTE  Q  V
Sbjct: 85  ELNASDDRGINVVRTKIKNFAAVAVGTAHQGGYPCPPYKIIILDEADSMTEDAQASV 134

[Close]

BLAST of Moc08g05120 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 45/115 (39.13%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +       +CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVL 84

Query: 104 ELNVNGD----------------------YCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN + D                         GY C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 132

[Close]

BLAST of Moc08g05120 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 45/115 (39.13%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVL 103
           H  ++ R +       +CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVL
Sbjct: 25  HQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVL 84

Query: 104 ELNVNGD----------------------YCKGYLCSLVKIIILDDAGSMTEATQ 137
           ELN + D                         GY C   KIIILD+A SMTE  Q
Sbjct: 85  ELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 132

[Close]

BLAST of Moc08g05120 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-11
Identity = 43/98 (43.88%), Postives = 49/98 (50.00%), Query Frame = 0


Query: 61  CPYTRFYGSPGTRKTTISLAIYHQLGQLLLFLRRPKLYESRVLELNVNGD---------- 120
           CP+  FYG PGT KTT +LAI HQ       L  P+LY+SRVLELN + D          
Sbjct: 30  CPHMLFYGPPGTGKTTTALAIAHQ-------LFGPELYKSRVLELNASDDRGINVVRTKI 89

Query: 121 ------------YCKGYLCSLVKIIILDDAGSMTEATQ 137
                          GY C   KIIILD+A SMTE  Q
Sbjct: 90  KDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQ 120

[Close]

BLAST of Moc08g05120 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-10
Identity = 38/102 (37.25%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 44  HHRKISRAIRACGLPVECPYTRFYGSPGTRKTTISLAIYHQLGQLL---------LFLRR 103
           H  ++ R +       +CP+  FYG PGT KTT +LAI HQL  +L         + + R
Sbjct: 25  HQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGVLELNASDDRGINVVR 84

Query: 104 PKLYESRVLELNVNGDYCKGYLCSLVKIIILDDAGSMTEATQ 137
            K+ +   + +  N     GY C   KIIILD+A SMTE  Q
Sbjct: 85  TKIKDFAAVAVGSNHRQ-SGYPCPSFKIIILDEADSMTEDAQ 125

The following BLAST results are available for this feature:

BLAST of Moc08g05120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020697924.2	7.1e-09	38.46	LOW QUALITY PROTEIN: replication factor C subunit 2-like, partial [Dendrobium ca...	[more]
NP_001185061.1	1.2e-08	39.13	ATPase family associated with various cellular activities (AAA) [Arabidopsis tha...	[more]
KAG7592536.1	1.2e-08	39.13	Replication factor C C-terminal [Arabidopsis thaliana x Arabidopsis arenosa] >KA...	[more]
XP_020674382.1	1.2e-08	39.13	replication factor C subunit 2 [Dendrobium catenatum]	[more]
KAG6435924.1	1.2e-08	39.32	hypothetical protein SASPL_100805 [Salvia splendens]	[more]

BLAST of Moc08g05120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZX1	1.6e-11	39.13	Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=1 SV=1	[more]
Q9FXM3	8.7e-10	37.72	Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 ...	[more]
Q09843	3.4e-06	38.95	Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
P35249	1.1e-04	35.71	Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2	[more]
Q99J62	1.1e-04	35.71	Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1	[more]

BLAST of Moc08g05120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A178WH05	5.9e-09	39.13	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g...	[more]
D7KKT1	5.9e-09	39.13	EMB1968 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_472407 PE=3 S...	[more]
F4HY43	5.9e-09	39.13	ATPase family associated with various cellular activities (AAA) OS=Arabidopsis t...	[more]
A0A2I0X2V9	5.9e-09	39.13	AAA domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca02256...	[more]
A0A4D9BXZ0	5.9e-09	39.32	Replication factor C subunit 2/4 OS=Salvia splendens OX=180675 GN=RFC2_4 PE=3 SV...	[more]

BLAST of Moc08g05120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21690.1	1.1e-12	39.13	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	1.1e-12	39.13	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.2	2.1e-11	43.88	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	8.9e-10	37.25	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd00009	AAA	coord: 66..139 e-value: 5.46495E-4 score: 36.3551
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 64..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g05120.1	Moc08g05120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding