Moc08g02930 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g02930
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr8: 2079344 .. 2080429 (-)
RNA-Seq ExpressionMoc08g02930
SyntenyMoc08g02930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCGATGTAACAATAAGGCGAGGAAACCAATCATTTCATATAGTCATGTCGAAATTTGTAGAGATTGGGTTTTGATCTCTCGCATTAAGCTGATTTCTATTAAGGAGGGTCTTCGGCTTGCCTTGCATTTGGAGCTTTCTGCAATTGCGGTGTTGTCTGGTTGCCTTCAAGCCGTATCACTTCTAGAGGAGGGGGAGATGAATCGTTCCGAAAATGCTATCCTGATGCAAGAAATTCGAGATTTGGGGAAGAGTTTTCAAAGGGTGGAGTTTCATCACATTGATATAGATGGAAACATGTTGGCTACTAAATTGGTCAAGGAAGCCATCAGATTGAGAATTTTTATGTGGTGGGATCAGGTTTTTCCAGTGTGGTTAACTAAGTTAACGACGAATAATCAATCAAATTTTGTAACCCACGTGGCATTTAGTTCAGCTTGATAAATTCATCTTCTTAATCTAAAAATGTATAGACTAAAACAAAATAAATATAAAAATTGAAACAACAAAACAAGATATAAAATATAACAATGGTAGTAAATATTAGACTCTCGAACTTGATCAATTGATAAAATATTAATAAATGGGAAAAAAATATATTAGGTGATTTTGTTTTTACAAACATTTATCAAATTTTTAATGATTTAACAATGTAAATTGTACATATGTATTGTCTAGGAGAGTACAGGATTTGTACTAAATAAATCTAATATTGATTACTTAGATTAGGGGTTGCTTTTGAAATTAAATATGAAATACGAAATGTGAAGGAAACGGCGCCGTGTTATGTGGATCATGTTGCCACTGTTTAGGGAAAGGCAAAAGCGGCACTGTAGGAAGATGCCAAACAAATGGACAATACCAATCTTGCCCACAGTGGTAAACTTGTCATTTCAATACAAATCAATCAATCAGAAACTACGACATGTCCAAATCACAGCCCTCCATTGTCGTTTCTTCCTTCCAGATAAGCCCGGTAGTAAACCTGTCCCGAGCTCTCTCGACCGTCCGATTCCCTTCCCTTCCCTCTTCATTGAAGCATGAATCTTCATTTGGACTATTCTGCCCCTCCCCTTATTAG

mRNA sequence

ATGGGAATCGATGAGGGTCTTCGGCTTGCCTTGCATTTGGAGCTTTCTGCAATTGCGGTGTTGTCTGGTTGCCTTCAAGCCGTATCACTTCTAGAGGAGGGGGAGATGAATCGTTCCGAAAATGCTATCCTGATGCAAGAAATTCGAGATTTGGGGAAGAGTTTTCAAAGGGTGGAGTTTCATCACATTGATATAGATGGAAACATGTTGGCTACTAAATTGGTCAAGGAAGCCATCAGATTGAGAATTTTTATGTGGTGGGATCAGATAAGCCCGGTAGTAAACCTGTCCCGAGCTCTCTCGACCGTCCGATTCCCTTCCCTTCCCTCTTCATTGAAGCATGAATCTTCATTTGGACTATTCTGCCCCTCCCCTTATTAG

Coding sequence (CDS)

ATGGGAATCGATGAGGGTCTTCGGCTTGCCTTGCATTTGGAGCTTTCTGCAATTGCGGTGTTGTCTGGTTGCCTTCAAGCCGTATCACTTCTAGAGGAGGGGGAGATGAATCGTTCCGAAAATGCTATCCTGATGCAAGAAATTCGAGATTTGGGGAAGAGTTTTCAAAGGGTGGAGTTTCATCACATTGATATAGATGGAAACATGTTGGCTACTAAATTGGTCAAGGAAGCCATCAGATTGAGAATTTTTATGTGGTGGGATCAGATAAGCCCGGTAGTAAACCTGTCCCGAGCTCTCTCGACCGTCCGATTCCCTTCCCTTCCCTCTTCATTGAAGCATGAATCTTCATTTGGACTATTCTGCCCCTCCCCTTATTAG

Protein sequence

MGIDEGLRLALHLELSAIAVLSGCLQAVSLLEEGEMNRSENAILMQEIRDLGKSFQRVEFHHIDIDGNMLATKLVKEAIRLRIFMWWDQISPVVNLSRALSTVRFPSLPSSLKHESSFGLFCPSPY
Homology
The following BLAST results are available for this feature:
BLAST of Moc08g02930 vs.
Match NameE-valueIdentityDescription
BLAST of Moc08g02930 vs.
Match NameE-valueIdentityDescription
BLAST of Moc08g02930 vs.
Match NameE-valueIdentityDescription
BLAST of Moc08g02930 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 3..78
e-value: 2.8E-11
score: 43.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..82
e-value: 1.2E-6
score: 30.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g02930.1Moc08g02930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity