Moc08g02180 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g02180
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNA-binding protein 38-like
Location	chr8: 1482116 .. 1485171 (+)
RNA-Seq Expression	Moc08g02180
Synteny	Moc08g02180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTTCTCCCAGTTTCCGCCGCAGTTCGGCGACACGACATGGACCAAGGTGTTCGTCGGAGGCCTCGCTTGGGAGACCCAATCCGAGGAAATGCATAGGTTTTTCCAACAGTTCGGAGAAATTCTCGAAGCTGTTATAATTAAGGATAAGAACACCGGAAAATCAAAAGGCTACGGATTCGTAAGTTTCTTCTCCCCCTCCCCGCCCGATTCCCTCCGAATTCACACATTTTCCGTTCAATTTTTTTAATTTTAGCTTTTTTTTTTCTTTTTAATTTTATTAATAGGTCACTTTTAGAGACCCTGAATCCGCGAGAAGGGCATGTGCCAATCCAAACCCAATTATTTGTGGAAGAAGAGCAAATTGTAACATCGCCGCCTTCGGCCGCCCTCGGCCGCCGCCGTCATTACCGCAGCCCGGAGGTTTTTTTTTTCTGTTTAAATAAAATATTGCAATAATTATAGGGAAAGTAAATTTTTGATCAATGGGAAACTAAACTTTCCTAAATTTGATTAATTAGTTAACCTTTATGCTTAATTAATTCTCGATTTTGCAGGAAGAAATCAAATTGGCAACCCCCAAAGTACAGCTCCGACTGCAGTGTCTTACGGCGGATTACGGCCGCTGTTTCCGCCGCCGCCACCGCAGGTCATTTTTCCACCGTATAGGTACGTGGGCTACACCTATTATTCCTATTCTATTCTTAAAACTCCCAGAAAATTTGAACTGTAAAAGGGAAAAAAAAAATGAAAACATAATTGCATGGTCCTGCCAGCGAACAGTATCTTCGATGGTGACCATGTTGTGAGGAAAAACAATTACCTCGACAAGAAGTCAAATGTCTGTCCAATTTCAGATGAGAAAAAGGAAAAAAAAAAAAAAAAAAGGCTTCGCCTTATCCAATTCTTATTCATTTTGTTTCTTTTTGCAGATACCGATCCTACGCTCCAAATTACACAGTTCCTTACCACCACCAAGTTAGCTTTTTTTTCATTGCACTTTTTGGTTTAACTTTAGAATTAAATGTTGAATTTGAATTTAAAAATGGTTGGCACTTGGCAGGCAATTTATAACCCACAACTTCAACAACCCCAATTGTACCAGCAAATGGCATCGCCATCTTCTTCTTCTGGAATTGGGTCCCCATATTATTATGGCTATGCCTATTCTTCTTCTTCTTCACAGCCACCTCTAAGAGGGGCATTTCCCATACATGGCCCTTCTTCACCATCATCACCATCATCATCATCATATTTTCCTTACTATCAAAACTACTCCCACATCAATCAGGGCTTGTTCTACACTCCAATGCAGCAGATCATTACCCCCAGTACTACTGGTAATAATTATTATTCATGATGTTATTACATTTTGTTTCTCAATTCAATTGATATCTTTATTGGGAATTTATATAGTAATTGCATGAGGCCATGTGACATATTATATATATATATATATATATATATATATATATGTGCATCATCATCATCAGCAATGTGGCTTCATAATAATGATGAATCATGGGATATATGGGTTTGCTTAGAATTTGGGGTTATGTTTGATATATATGTTATCATGTCTGATAGAGGCACATGGGTTAGCCTGAGGCCATGTGATGGATGAGCTGTCTGATGGGTCATGCCATCATATATATATATATATATATATATATATATATATATATATATATATATATATACACCATGAAAATTGGTGAGTGGGAAAATAAAGTCATGACAGATTGGAAATTCAGCAGCTCAAATATTAGTGACTCCTGCCTTTCTCATTCTCAATTTTAGGTCATTGGGTCACATAAGAGGTTGTTTGGAAGTAGAGTTTAAATTTTAGTTTTTGTTTGTTAAAATGATAAAATATTAGCAACCAAAAAAATATGTTAAACCGGATAGGAAAAAACTTACTAGGTCTTGGCGGGTGCTAATCTAATAATCTAATTCTATGCTAACCATCAATACAATAATAAAAAGATTGATAGCTCATTTTTTTTTTTAAGTTATCTGGTCAAACATTTAATGATGGTTAGCACAAGATACTCACCGGTGAGGATTTCATAATCATTTCAATTTGGTTTATGTTTTTATCACATATATATATTCTTTTGTTTGGTTAGATAGTTTTTATAATCATTTTCAAAATCTAGGTGAATTTTTGACAACCAAAAATGTAGTTTTTTTTTTTCAAATTTAGCTAAGAATCTTTTAAATATGTTTTTGAGAGGTTGGTGAAAAACTATGTAAAAAACAAGCCTAATTTTTAAAAAGAAAAAAACTAAACACAAAATAGTTTGGGCCTAATAATAATAATATGTTGAGTGAGATGACTTGTAATTGATTTTTAAAATTATTTTCGTTGATCGAATGTTTTTTAAAATTTATTCTTCCTTTGAAATCATAATTATTGGTAAACAATGACTTTCAGTCCATATTATTAACAAGTTATTTAATCAAAAGCAATTTTTAGAAACTATTCCTAAAAATAATTCTCTAAGGTGTTGTTTTGAGAATGATATTTTAAAAAATTACAGCTCACATTTTAACCAAAATTTTTATCTTTTAATATTCAGAAACTATTTAGATTTTTTAAAAATCTTTTTTGAACCCAGCTAGCTTTATTTATAAAACAATTCTAAAATTATTCCACATAAAAAAACCCTTCAAAAAAATTAAGTAAGTTGAGATATGGGATGTGTTGTGTATGGAACCATAATGAGCTTAAAAGTGAAGAAAAGTAAAAAGATGAACAAAAAAAGAAAGATTATTAATAATACCAAAAACTCAATTAACTGTCATCGATTCATCGTGAATATATCTTCTGCATATTTCACGAGTAATAAAACTTTTTTAGACCTTAGAGATTATTAAAGTGTAGAGATATAAAAATGATATTTTAAGAAAAAGAAAATATATGTTGAAGATGAAGCAGAAGATTTTATGTATATTTTGGATATAATTTCAGGTTGGCAGAGTCCACAGCGTACTCCAACGGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGCCCAAATACTTCATAG

mRNA sequence

ATGGCTGATTTCTCCCAGTTTCCGCCGCAGTTCGGCGACACGACATGGACCAAGGTGTTCGTCGGAGGCCTCGCTTGGGAGACCCAATCCGAGGAAATGCATAGGTTTTTCCAACAGTTCGGAGAAATTCTCGAAGCTGTTATAATTAAGGATAAGAACACCGGAAAATCAAAAGGCTACGGATTCGTCACTTTTAGAGACCCTGAATCCGCGAGAAGGGCATGTGCCAATCCAAACCCAATTATTTGTGGAAGAAGAGCAAATTGTAACATCGCCGCCTTCGGCCGCCCTCGGCCGCCGCCGTCATTACCGCAGCCCGGAGGAAGAAATCAAATTGGCAACCCCCAAAGTACAGCTCCGACTGCAGTGTCTTACGGCGGATTACGGCCGCTGTTTCCGCCGCCGCCACCGCAGGTCATTTTTCCACCGTATAGATACCGATCCTACGCTCCAAATTACACAGTTCCTTACCACCACCAAGCAATTTATAACCCACAACTTCAACAACCCCAATTGTACCAGCAAATGGCATCGCCATCTTCTTCTTCTGGAATTGGGTCCCCATATTATTATGGCTATGCCTATTCTTCTTCTTCTTCACAGCCACCTCTAAGAGGGGCATTTCCCATACATGGCCCTTCTTCACCATCATCACCATCATCATCATCATATTTTCCTTACTATCAAAACTACTCCCACATCAATCAGGGCTTGTTCTACACTCCAATGCAGCAGATCATTACCCCCAGTACTACTGGTTGGCAGAGTCCACAGCGTACTCCAACGGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGCCCAAATACTTCATAG

Coding sequence (CDS)

ATGGCTGATTTCTCCCAGTTTCCGCCGCAGTTCGGCGACACGACATGGACCAAGGTGTTCGTCGGAGGCCTCGCTTGGGAGACCCAATCCGAGGAAATGCATAGGTTTTTCCAACAGTTCGGAGAAATTCTCGAAGCTGTTATAATTAAGGATAAGAACACCGGAAAATCAAAAGGCTACGGATTCGTCACTTTTAGAGACCCTGAATCCGCGAGAAGGGCATGTGCCAATCCAAACCCAATTATTTGTGGAAGAAGAGCAAATTGTAACATCGCCGCCTTCGGCCGCCCTCGGCCGCCGCCGTCATTACCGCAGCCCGGAGGAAGAAATCAAATTGGCAACCCCCAAAGTACAGCTCCGACTGCAGTGTCTTACGGCGGATTACGGCCGCTGTTTCCGCCGCCGCCACCGCAGGTCATTTTTCCACCGTATAGATACCGATCCTACGCTCCAAATTACACAGTTCCTTACCACCACCAAGCAATTTATAACCCACAACTTCAACAACCCCAATTGTACCAGCAAATGGCATCGCCATCTTCTTCTTCTGGAATTGGGTCCCCATATTATTATGGCTATGCCTATTCTTCTTCTTCTTCACAGCCACCTCTAAGAGGGGCATTTCCCATACATGGCCCTTCTTCACCATCATCACCATCATCATCATCATATTTTCCTTACTATCAAAACTACTCCCACATCAATCAGGGCTTGTTCTACACTCCAATGCAGCAGATCATTACCCCCAGTACTACTGGTTGGCAGAGTCCACAGCGTACTCCAACGGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGCCCAAATACTTCATAG

Protein sequence

MADFSQFPPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRDPESARRACANPNPIICGRRANCNIAAFGRPRPPPSLPQPGGRNQIGNPQSTAPTAVSYGGLRPLFPPPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQMASPSSSSGIGSPYYYGYAYSSSSSQPPLRGAFPIHGPSSPSSPSSSSYFPYYQNYSHINQGLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNTS

Homology

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BLAST of Moc08g02180 vs. NCBI nr
Match: XP_008444844.1 (PREDICTED: RNA-binding protein 38-like [Cucumis melo])

HSP 1 Score: 404.8 bits (1039), Expect = 5.9e-109
Identity = 219/286 (76.57%), Postives = 233/286 (81.47%), Query Frame = 0


Query: 1   MADFSQF-----PPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTG 60
           MAD + F     PP  GDTTWTK+FVGGLAWETQS EMH FFQQFG+ILEAVII+DK+TG
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFRDPESARRACANPNPIICGRRANCNIAAFGRPRPPPSLPQPGGRNQIGNP 120
           KSKGYGFVTF+DPESARRACANPNPIICGRRANCNIAAFGRPRPPP  P  GGRNQIGN 
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QSTAPTAV-SYGGLRPLFPPPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQ 180
           QST+P A  SYGGLRP  P PPPQ+IFP YRYRSYAPNYTVPY HQAIYNPQ+QQPQ+YQ
Sbjct: 121 QSTSPAAAGSYGGLRP--PFPPPQLIFPHYRYRSYAPNYTVPY-HQAIYNPQIQQPQMYQ 180

Query: 181 QMASPSSSSGIGSPYYYGYAYSSSSSQPPL-RGAFPIHGPSSPSSPSSSSYFPYYQNYSH 240
           Q  SPS SS   S YYYGY YSSS S   L R AF +HG      P S SYFPYY NY+H
Sbjct: 181 QSPSPSPSS--SSSYYYGYGYSSSPSSSQLPRAAFSVHG----HPPQSPSYFPYYTNYTH 240

Query: 241 INQ--GLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNTS 278
           + Q  GLFYTPM QIITPSTTGWQ+PQ TPTETEAGASGSNSPNTS
Sbjct: 241 MQQQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277

[Close]

BLAST of Moc08g02180 vs. NCBI nr
Match: XP_004152633.3 (RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_022450 [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 8.5e-108
Identity = 218/285 (76.49%), Postives = 231/285 (81.05%), Query Frame = 0


Query: 1   MADFSQF-----PPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTG 60
           MAD + F     PP  GDTTWTK+FVGGLAWETQS EMH FFQQFG+ILEAVII+DK+TG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFRDPESARRACANPNPIICGRRANCNIAAFGRPRPPPSLPQPGGRNQIGNP 120
           KSKGYGFVTF+DPESARRACANPNPIICGRRANCNIAAFGRPRPPP  P  GGRNQIGN 
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QSTAPTAV-SYGGLRPLFPPPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQ 180
           QSTAP A  SYGGLRP  P PPPQ+IFP YRYRSYAPNYTVPY HQAIYNPQ+QQPQ+YQ
Sbjct: 121 QSTAPAAAGSYGGLRP--PFPPPQLIFPHYRYRSYAPNYTVPY-HQAIYNPQIQQPQMYQ 180

Query: 181 QMASPSSSSGIGSPYYYGYAYSSSSSQPPL-RGAFPIHGPSSPSSPSSSSYFPYYQNYSH 240
           Q  SPS SS   S YYY Y YSSS S   L R AF +HG      P S SYFPYY NY+H
Sbjct: 181 QSPSPSPSS--SSSYYYSYGYSSSPSSSQLPRAAFSVHG----HPPQSPSYFPYYTNYTH 240

Query: 241 I-NQGLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNTS 278
           +  QGL YTPM QIITPSTTGWQ+PQ TPTETEAGASGSNSPNTS
Sbjct: 241 MQQQGLVYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 276

[Close]

BLAST of Moc08g02180 vs. NCBI nr
Match: XP_038884547.1 (RNA-binding protein 38-like [Benincasa hispida])

HSP 1 Score: 392.5 bits (1007), Expect = 3.0e-105
Identity = 218/285 (76.49%), Postives = 230/285 (80.70%), Query Frame = 0


Query: 1   MADFSQF------PPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNT 60
           MAD + F      PP  GDTTWTK+FVGGLAWETQS EMH FFQQFG+ILEAVII+DK+T
Sbjct: 1   MADNNSFLLNRPAPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT 60

Query: 61  GKSKGYGFVTFRDPESARRACANPNPIICGRRANCNIAAFGRPRPPPSLPQPGGRNQIGN 120
           GKSKGYGFVTF+DPESARRACANPNPIICGRRANCNIAAFGRPRPPP  P  GGRNQ GN
Sbjct: 61  GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSSGGRNQSGN 120

Query: 121 PQSTAPTAV--SYGGLRPLFPPPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQL 180
            QST P AV  SYGGLRP  P PPPQ+IFP YRYRSYAPNYTVPY  QAIYNPQLQQPQ+
Sbjct: 121 LQSTTPPAVAGSYGGLRP--PFPPPQLIFPQYRYRSYAPNYTVPY-PQAIYNPQLQQPQM 180

Query: 181 YQQMASPSSSSGIGSPYYYGYAYSSSSSQPPLRGAFPIHGPSSPSSPSSSSYFPYYQNYS 240
           YQQ  S S SS   S YY+GY YSSSSS    RGAF      SP S SS SYFPYY NY+
Sbjct: 181 YQQSPSSSPSS---SSYYFGYGYSSSSSSQHPRGAF------SPLS-SSPSYFPYYTNYT 240

Query: 241 HINQGLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNTS 278
           H+ QGLFYTPM QIITPS TGWQ+PQ TPTETEAGASGSNSPNTS
Sbjct: 241 HMQQGLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 271

[Close]

BLAST of Moc08g02180 vs. NCBI nr
Match: KAG6598692.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355.9 bits (912), Expect = 3.1e-94
Identity = 203/286 (70.98%), Postives = 216/286 (75.52%), Query Frame = 0


Query: 8   PPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRD 67
           PP FGDTTWTK+FVGGLAWETQS+EM  FFQQFGEILEAVII DKNTGKSKGYGFVTFRD
Sbjct: 10  PPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRD 69

Query: 68  PESARRACANPNPIICGRRANCNIAAFGRPRPPPSLP-QPGGRNQIGNPQSTAPTAVSYG 127
           P+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGN Q+T+  A SYG
Sbjct: 70  PDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYG 129

Query: 128 GLRPLFP------------PPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQ 187
           GL   +P            PPPPQ++FP YRYRSYAPNYT+PY HQAIYNPQLQ  QLYQ
Sbjct: 130 GLLTPYPPPPSPPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPY-HQAIYNPQLQSAQLYQ 189

Query: 188 QMASPSSSSGIGSPYYYGYAYSSSSSQPPLRGAFPI----HGPSSPSSPSSSSYFPYYQN 247
              SP SSS     Y YGY Y SSSS  P RGAFP+    HGPSSP S SS SYFPYY N
Sbjct: 190 HQQSPCSSS-----YGYGYGYPSSSSPSP-RGAFPVHGYGHGPSSPLS-SSPSYFPYYTN 249

Query: 248 YSHINQGLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNT 277
           Y+H+ Q LFY  M QI TP T G QS    PTETE GASGSN+PNT
Sbjct: 250 YTHMQQPLFYAHMHQIATP-TPGRQS----PTETEGGASGSNTPNT 282

[Close]

BLAST of Moc08g02180 vs. NCBI nr
Match: XP_022961976.1 (RNA-binding protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 355.1 bits (910), Expect = 5.3e-94
Identity = 204/284 (71.83%), Postives = 218/284 (76.76%), Query Frame = 0


Query: 8   PPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRD 67
           PP FGDTTWTK+FVGGLAWETQS+EM  FFQQFGEILEAVII+DKNTGKSKGYGFVTFRD
Sbjct: 10  PPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRD 69

Query: 68  PESARRACANPNPIICGRRANCNIAAFGRPRPPPSLP-QPGGRNQIGNPQSTAPTAVSYG 127
           P+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGN Q+T+  A SYG
Sbjct: 70  PDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYG 129

Query: 128 GLRPLFP----PPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQMASPSSS 187
           GL   +P    PPPPQ++FP YRYRSYAPNYT+PY HQAIYNPQLQ  QLY Q  SP SS
Sbjct: 130 GLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPY-HQAIYNPQLQSAQLYPQ--SPCSS 189

Query: 188 SGIGSPYYYGYAYSSSSSQPPLRGAFPIHG----------PSSPSSPSSSSYFPYYQNYS 247
           S     Y YGY Y SSSS  P RGAFP+HG          PSSP S SS SYFPYY NY+
Sbjct: 190 S-----YGYGYGYPSSSSPSP-RGAFPVHGYGHGHGHGHDPSSPLS-SSPSYFPYYTNYT 249

Query: 248 HINQGLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNT 277
           H+ Q LFY  M QI TP TTG QS    PTETE GASGSN+PNT
Sbjct: 250 HMQQPLFYAHMHQIATP-TTGRQS----PTETEGGASGSNTPNT 278

[Close]

BLAST of Moc08g02180 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.7e-23
Identity = 100/263 (38.02%), Postives = 132/263 (50.19%), Query Frame = 0


Query: 11  FGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRDPES 70
           FGDT  TKVFVGGLAW+T  E M+  F ++G+ILEAVII DK T +SKGYGFVTF+D ++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 71  ARRACANPNPIICGRRANCNIAAFG---RPRPPPSLPQPGGRNQIGNPQSTAPTAVSY-- 130
           A RAC +  PII GRRANCN+A+ G   R  P  + PQ G +N  GN ++T P   ++  
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN--GN-RATPPHVGNHSQ 130

Query: 131 ----GGLRPLFPPPPPQVIFPPYRYRS--YAPNYTVPYHHQAIYNPQLQQPQLYQQMASP 190
                G              P Y Y S   APN T  ++ +  Y         Y QM  P
Sbjct: 131 WYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMT--FNQKVGYVGGTYMNGYYAQM-QP 190

Query: 191 SSSSGIGSPYYYGYAYSSSSSQPPLRGAFPIHGPSSPSSPSSSSYFPYYQNYS-HINQGL 250
              S     YY+ + Y          G   + G +SP  P  + Y PY+Q+ +    Q  
Sbjct: 191 QPQSQPQPQYYHHHMYG---------GGRVMVGAASPMVPFYTVY-PYHQSQAIGFPQPS 250

Query: 251 FYTPMQQIITP--STTGWQSPQR 260
           F  P+     P   T G +S Q+
Sbjct: 251 FSKPLSFSTPPISGTVGGESIQK 257

[Close]

BLAST of Moc08g02180 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-22
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 13  DTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRDPESAR 72
           DTT+TK+FVGGL + T    + ++F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73  RACANPNPIICGRRANCNIAAFGRPRPPPSLPQPG 108
           RAC +PNPII GR+AN N+A  G     P + QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKPRIMQPG 98

[Close]

BLAST of Moc08g02180 vs. ExPASy Swiss-Prot
Match: Q6DIV4 (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.6e-22
Identity = 75/202 (37.13%), Postives = 104/202 (51.49%), Query Frame = 0


Query: 13  DTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRDPESAR 72
           DTT+TK+FVGGL + T    + ++F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 73  RACANPNPIICGRRANCNIAAFG-RPRPPPSLPQPGGRNQIGNPQSTAPTAVSYGGLRPL 132
           RAC +PNPII GR+AN N+A  G +PR               N QS     V    L P 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPR---------------NLQSAFTIGVQQ--LHPA 126

Query: 133 FPPPP----PQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQMASPSSSSGIGS 192
           F   P    PQ I+PP       P+  +P    ++ +P +      Q     ++++    
Sbjct: 127 FIQRPFGLTPQYIYPP---AIVQPSVVIPTPIPSLQSPYIDYNAATQAFTHYTTAAYEQY 186

Query: 193 PY-------YYGYAYSSSSSQP 203
           PY       Y GY Y+S+  QP
Sbjct: 187 PYAASPATGYMGYGYTSAVQQP 188

[Close]

BLAST of Moc08g02180 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 77/196 (39.29%), Postives = 107/196 (54.59%), Query Frame = 0


Query: 13  DTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRDPESAR 72
           DTT+TK+FVGGL + T    + ++F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 73  RACANPNPIICGRRANCNIAAFGRPRPPPSLPQPGGRNQIGNPQSTAPTAVSYG-GLRPL 132
           RAC +PNPII GR+AN N+A  G    P SL Q G    +   Q   PT +    GL P 
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLG--AKPRSL-QTGFAIGV---QQLHPTLIQRTYGLTPH 149

Query: 133 FPPPP----PQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQ--PQLYQQMASPSSSSGI 192
           +  PP    P V+ P     +  P+ + PY      +P   Q  P  Y Q   P ++S  
Sbjct: 150 YIYPPAIVQPSVVIP----AAPVPSLSSPYIEYTPASPAYAQYPPATYDQY--PYAASPA 209

Query: 193 GSPYYYGYAYSSSSSQ 202
            +  + GY+Y ++  Q
Sbjct: 210 TAASFVGYSYPAAVPQ 213

[Close]

BLAST of Moc08g02180 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-21
Identity = 81/222 (36.49%), Postives = 115/222 (51.80%), Query Frame = 0


Query: 13  DTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRDPESAR 72
           DTT+TK+FVGGL + T    + ++F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73  RACANPNPIICGRRANCNIAAFGRPRPPPSLPQPG---GRNQIGNPQSTAPTAVSYGGLR 132
           RAC +PNPII GR+AN N+A  G     P + QPG   G  Q+       P  +    + 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVY 126

Query: 133 PLFPPPPPQVIFPPYRYRSYAPNYTVPY-----HHQAIYNPQLQQPQLYQQMASPSSSSG 192
           P     P  VI  P+   + A   T PY        A Y+      + Y   ASP++++G
Sbjct: 127 PQAFVQPGVVI--PHVQPAAAAASTTPYIGYTGAAYAQYSAAAAAYEQYPYAASPAAAAG 186

Query: 193 IGSPYYYGYAYSSSSSQPPLRGAFPIHGPSSPSSPSSSSYFP 227
             +   YGYA      Q P+  A P  G ++ ++ +   Y P
Sbjct: 187 YVAAGGYGYAV-----QQPITAAAP--GTAAAAAAAFGQYQP 216

[Close]

BLAST of Moc08g02180 vs. ExPASy TrEMBL
Match: A0A1S3BBB0 (RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.8e-109
Identity = 219/286 (76.57%), Postives = 233/286 (81.47%), Query Frame = 0


Query: 1   MADFSQF-----PPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTG 60
           MAD + F     PP  GDTTWTK+FVGGLAWETQS EMH FFQQFG+ILEAVII+DK+TG
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFRDPESARRACANPNPIICGRRANCNIAAFGRPRPPPSLPQPGGRNQIGNP 120
           KSKGYGFVTF+DPESARRACANPNPIICGRRANCNIAAFGRPRPPP  P  GGRNQIGN 
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QSTAPTAV-SYGGLRPLFPPPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQ 180
           QST+P A  SYGGLRP  P PPPQ+IFP YRYRSYAPNYTVPY HQAIYNPQ+QQPQ+YQ
Sbjct: 121 QSTSPAAAGSYGGLRP--PFPPPQLIFPHYRYRSYAPNYTVPY-HQAIYNPQIQQPQMYQ 180

Query: 181 QMASPSSSSGIGSPYYYGYAYSSSSSQPPL-RGAFPIHGPSSPSSPSSSSYFPYYQNYSH 240
           Q  SPS SS   S YYYGY YSSS S   L R AF +HG      P S SYFPYY NY+H
Sbjct: 181 QSPSPSPSS--SSSYYYGYGYSSSPSSSQLPRAAFSVHG----HPPQSPSYFPYYTNYTH 240

Query: 241 INQ--GLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNTS 278
           + Q  GLFYTPM QIITPSTTGWQ+PQ TPTETEAGASGSNSPNTS
Sbjct: 241 MQQQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277

[Close]

BLAST of Moc08g02180 vs. ExPASy TrEMBL
Match: A0A0A0LLP2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.4e-108
Identity = 218/285 (76.49%), Postives = 231/285 (81.05%), Query Frame = 0


Query: 1   MADFSQF-----PPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTG 60
           MAD + F     PP  GDTTWTK+FVGGLAWETQS EMH FFQQFG+ILEAVII+DK+TG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFRDPESARRACANPNPIICGRRANCNIAAFGRPRPPPSLPQPGGRNQIGNP 120
           KSKGYGFVTF+DPESARRACANPNPIICGRRANCNIAAFGRPRPPP  P  GGRNQIGN 
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QSTAPTAV-SYGGLRPLFPPPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQ 180
           QSTAP A  SYGGLRP FPPPP  +IFP YRYRSYAPNYTVPY HQAIYNPQ+QQPQ+YQ
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPP--LIFPHYRYRSYAPNYTVPY-HQAIYNPQIQQPQMYQ 180

Query: 181 QMASPSSSSGIGSPYYYGYAYSSSSSQPPL-RGAFPIHGPSSPSSPSSSSYFPYYQNYSH 240
           Q  SPS SS   S YYY Y YSSS S   L R AF +HG      P S SYFPYY NY+H
Sbjct: 181 QSPSPSPSS--SSSYYYSYGYSSSPSSSQLPRAAFSVHG----HPPQSPSYFPYYTNYTH 240

Query: 241 I-NQGLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNTS 278
           +  QGL YTPM QIITPSTTGWQ+PQ TPTETEAGASGSNSPNTS
Sbjct: 241 MQQQGLVYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 276

[Close]

BLAST of Moc08g02180 vs. ExPASy TrEMBL
Match: A0A6J1HBU2 (RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.6e-94
Identity = 204/284 (71.83%), Postives = 218/284 (76.76%), Query Frame = 0


Query: 8   PPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRD 67
           PP FGDTTWTK+FVGGLAWETQS+EM  FFQQFGEILEAVII+DKNTGKSKGYGFVTFRD
Sbjct: 10  PPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRD 69

Query: 68  PESARRACANPNPIICGRRANCNIAAFGRPRPPPSLP-QPGGRNQIGNPQSTAPTAVSYG 127
           P+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGN Q+T+  A SYG
Sbjct: 70  PDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYG 129

Query: 128 GLRPLFP----PPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQMASPSSS 187
           GL   +P    PPPPQ++FP YRYRSYAPNYT+PY HQAIYNPQLQ  QLY Q  SP SS
Sbjct: 130 GLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPY-HQAIYNPQLQSAQLYPQ--SPCSS 189

Query: 188 SGIGSPYYYGYAYSSSSSQPPLRGAFPIHG----------PSSPSSPSSSSYFPYYQNYS 247
           S     Y YGY Y SSSS  P RGAFP+HG          PSSP S SS SYFPYY NY+
Sbjct: 190 S-----YGYGYGYPSSSSPSP-RGAFPVHGYGHGHGHGHDPSSPLS-SSPSYFPYYTNYT 249

Query: 248 HINQGLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNT 277
           H+ Q LFY  M QI TP TTG QS    PTETE GASGSN+PNT
Sbjct: 250 HMQQPLFYAHMHQIATP-TTGRQS----PTETEGGASGSNTPNT 278

[Close]

BLAST of Moc08g02180 vs. ExPASy TrEMBL
Match: A0A6J1HBJ1 (RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.2e-88
Identity = 196/284 (69.01%), Postives = 210/284 (73.94%), Query Frame = 0


Query: 8   PPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRD 67
           PP FGDTTWTK+FVGGLAWETQS+EM  FFQQFGEILEAVII+DKNTGKSKGYGFVTFRD
Sbjct: 10  PPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRD 69

Query: 68  PESARRACANPNPIICGRRANCNIAAFGRPRPPPSLP-QPGGRNQIGNPQSTAPTAVSYG 127
           P+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGN Q+T+  A SYG
Sbjct: 70  PDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYG 129

Query: 128 GLRPLFP----PPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQMASPSSS 187
           GL   +P    PPPPQ++FP YRYRSYAPNYT+PYH          Q QLY Q  SP SS
Sbjct: 130 GLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYH----------QAQLYPQ--SPCSS 189

Query: 188 SGIGSPYYYGYAYSSSSSQPPLRGAFPIHG----------PSSPSSPSSSSYFPYYQNYS 247
           S     Y YGY Y SSSS  P RGAFP+HG          PSSP S SS SYFPYY NY+
Sbjct: 190 S-----YGYGYGYPSSSSPSP-RGAFPVHGYGHGHGHGHDPSSPLS-SSPSYFPYYTNYT 249

Query: 248 HINQGLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNT 277
           H+ Q LFY  M QI TP TTG QS    PTETE GASGSN+PNT
Sbjct: 250 HMQQPLFYAHMHQIATP-TTGRQS----PTETEGGASGSNTPNT 269

[Close]

BLAST of Moc08g02180 vs. ExPASy TrEMBL
Match: A0A6J1KAW8 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 6.8e-87
Identity = 193/283 (68.20%), Postives = 207/283 (73.14%), Query Frame = 0


Query: 8   PPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRD 67
           PP FGDTTWTK+FVGGLAWETQS+EM  FFQQFGEILEAVII DKNTGKSKGYGFVTFRD
Sbjct: 10  PPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRD 69

Query: 68  PESARRACANPNPIICGRRANCNIAAFGRPRPPPSLP-QPGGRNQIGNPQSTAPTAVSYG 127
           P+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGN  +T+  A S+G
Sbjct: 70  PDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLHTTSAAAASFG 129

Query: 128 GLRPLFP-----PPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQMASPSS 187
           GL   +P     PPPPQ++FP YRYRSYAPNYT+PYH          QPQLYQQ  SP S
Sbjct: 130 GLLTPYPPPPSSPPPPQIMFPAYRYRSYAPNYTLPYH----------QPQLYQQ--SPCS 189

Query: 188 SSGIGSPYYYGYAYSSSSSQPPLRGAFPI--------HGPSSPSSPSSSSYFPYYQNYSH 247
           SS     Y Y Y Y SSSSQ P R AFP+        HGPSSP S SS SYFPYY NY+H
Sbjct: 190 SS-----YGYAYGYPSSSSQSP-RVAFPVHGYGHGHAHGPSSPLS-SSPSYFPYYTNYTH 249

Query: 248 INQGLFYTPMQQIITPSTTGWQSPQRTPTETEAGASGSNSPNT 277
           + Q LFY  M  I TP  TG QS    PTETE GASGSN+PNT
Sbjct: 250 MQQPLFYAHMHPIATP-ITGRQS----PTETEGGASGSNTPNT 268

[Close]

BLAST of Moc08g02180 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 205.7 bits (522), Expect = 4.9e-53
Identity = 137/279 (49.10%), Postives = 172/279 (61.65%), Query Frame = 0


Query: 1   MADFSQFPPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGY 60
           M+  S +   FGDTT+TKVFVGGLAWET ++EM R+F+QFGEILEAVII DKNTGKSKGY
Sbjct: 1   MSQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIICGRRANCNIAAFGRPRPPPSLPQPGGRNQIGNP---QS 120
           GFVTFR+ +SA RA A+PNP+I GR+ANCNIA+FGRPRP P    P GR Q G+P   QS
Sbjct: 61  GFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSP----PRGRGQTGSPSQYQS 120

Query: 121 TAPTAVSYGGLRPLFPPPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQM- 180
             P+  + G   PL P   PQ+++P Y Y +Y P+     +HQA+YN QLQQ Q YQQ  
Sbjct: 121 GGPSTYT-GMAAPLPPAAAPQLMYPSYGY-TYNPDQF--GYHQALYNTQLQQAQYYQQQQ 180

Query: 181 -------ASPSSSSG--IGSPYYYGYAYSSSSSQPPLRGAFPIHGPSSPSSP-----SSS 240
                   SPSSS    + SPYYYG  YS  + + P +    +  P +P        SS 
Sbjct: 181 QLYGGGATSPSSSGATIMPSPYYYG--YSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSP 240

Query: 241 SYFPYYQNYSHINQGLFYTPMQQIITPSTTGWQSPQRTP 262
           S+  Y  N S      F  P+Q +++ ST     PQ+ P
Sbjct: 241 SFLVYPSNSS------FAPPLQGVLSSSTESEAVPQQVP 263

[Close]

BLAST of Moc08g02180 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 202.2 bits (513), Expect = 5.4e-52
Identity = 134/269 (49.81%), Postives = 168/269 (62.45%), Query Frame = 0


Query: 1   MADFSQFPPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGY 60
           M+  S +   FGDTT+TKVFVGGLAWET ++EM R+F+QFGEILEAVII DKNTGKSKGY
Sbjct: 1   MSQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIICGRRANCNIAAFGRPRPPPSLPQPGGRNQIGNP---QS 120
           GFVTFR+ +SA RA A+PNP+I GR+ANCNIA+FGRPRP P    P GR Q G+P   QS
Sbjct: 61  GFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSP----PRGRGQTGSPSQYQS 120

Query: 121 TAPTAVSYGGLRPLFPPPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQM- 180
             P+  + G   PL P   PQ+++P Y Y +Y P+     +HQA+YN QLQQ Q YQQ  
Sbjct: 121 GGPSTYT-GMAAPLPPAAAPQLMYPSYGY-TYNPDQF--GYHQALYNTQLQQAQYYQQQQ 180

Query: 181 -------ASPSSSSG--IGSPYYYGYAYSSSSSQPPLRGAFPIHGPSSPSSP-----SSS 240
                   SPSSS    + SPYYYG  YS  + + P +    +  P +P        SS 
Sbjct: 181 QLYGGGATSPSSSGATIMPSPYYYG--YSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSP 240

Query: 241 SYFPYYQNYSHINQGLFYTPMQQIITPST 252
           S+  Y  N S      F  P+Q +++ ST
Sbjct: 241 SFLVYPSNSS------FAPPLQGVLSSST 253

[Close]

BLAST of Moc08g02180 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-45
Identity = 131/280 (46.79%), Postives = 161/280 (57.50%), Query Frame = 0


Query: 1   MADFSQFPPQFGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGY 60
           M++ S +   FGDTT TKVFVGGLAWET ++EM R+F QFGEILEAVII DK TGKSKGY
Sbjct: 1   MSNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIICGRRANCNIAAFGRPRPPPSLPQPGGRNQIGNP-QSTA 120
           GFVTFRD +SA RA A+PNP+I GR+ANCNIA+FGRPRP      P GR Q G+P Q   
Sbjct: 61  GFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRP----STPRGRGQGGSPSQYQG 120

Query: 121 PTAVSYGGL-RPLFPPPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQM-- 180
               SY G+  P+      Q+++P Y Y +Y   Y    +HQA+YN QLQQ Q YQQ   
Sbjct: 121 GGQSSYTGMAAPVQQAAAAQLMYPSYGY-TYNSEYG---YHQALYNAQLQQAQYYQQQMY 180

Query: 181 -----ASPSSSSGIGSPYYYGYAYSSSSSQPPL--RGAFPIHGPSSPSS------PSSSS 240
                 SPSSS+ + SPYYY     + S +P L  +  +  H             PS+SS
Sbjct: 181 GGGGATSPSSSNIMPSPYYY---LQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASS 240

Query: 241 YFPYYQNYSHINQGLFYTPMQQIITPSTTGWQSPQRTPTE 264
           Y  Y  N           P  Q    S+T   +PQ+   E
Sbjct: 241 YLIYPSNVEAPTPS--NVPTSQGPLSSSTESHAPQQVSEE 267

[Close]

BLAST of Moc08g02180 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-39
Identity = 105/217 (48.39%), Postives = 130/217 (59.91%), Query Frame = 0


Query: 11  FGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRDPES 70
           FGDTT+TKVFVGGLAWETQSE + + F+Q+GEILEAV+I DKNTG+SKGYGFVTFRDPE+
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEA 77

Query: 71  ARRACANPNPIICGRRANCNIAAFGRPRPP---PSLPQPGGRNQ-----IGNPQSTAPTA 130
           ARRACA+P PII GRRANCN+A+ GRPRPP     +P   GR +     IGN Q    + 
Sbjct: 78  ARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPRGSL 137

Query: 131 VSYGGLRPLFPPPPPQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQMASPSSS 190
           +     +   P    Q +  PY   +Y P Y      Q +Y+P + Q Q  Q    P + 
Sbjct: 138 IGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYS-QSQGLYSPYMGQ-QYLQVYGVPGA- 197

Query: 191 SGIGSP-YYYGYAYSSSSSQPPLRGAFPIHGPSSPSS 219
             + SP Y YG     S + P   G   + G S P S
Sbjct: 198 --VNSPVYQYG---QLSQTIPNGHGYTAVQGYSVPGS 226

[Close]

BLAST of Moc08g02180 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.9 bits (385), Expect = 3.7e-37
Identity = 115/258 (44.57%), Postives = 142/258 (55.04%), Query Frame = 0


Query: 11  FGDTTWTKVFVGGLAWETQSEEMHRFFQQFGEILEAVIIKDKNTGKSKGYGFVTFRDPES 70
           FGDTT+TKVFVGGLAWETQSE + R F Q+G+ILEAV+I DKNTG+SKGYGFVTFRDPE+
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77

Query: 71  ARRACANPNPIICGRRANCNIAAFGRPRPPPS---LPQPGGRNQ-----IGNPQSTAPTA 130
           ARRAC +P PII GRRANCN+A+ GR RPP     +P   GR +     +G+ QS  P  
Sbjct: 78  ARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQS--PRG 137

Query: 131 VSYGGLRPLFPPPP---PQVIFPPYRYRSYAPNYTVPYHHQAIYNPQLQQPQLYQQMASP 190
           + +G   P   PP     Q +  PY    Y P+Y      Q  Y P + Q Q  Q    P
Sbjct: 138 LHFGS-HPYHQPPTYNYQQGVVYPYGVTPYGPDYMYS-QSQGFYGPYMGQ-QYLQVYGVP 197

Query: 191 SSSSGIGSPYYYGYAYSS-SSSQPPLRGAFPIHGPSSP---------SSPSSSSYFPYYQ 247
            +   + SP   GY Y   S + P   G     G S P         +SP S+   PY  
Sbjct: 198 GA---VNSP---GYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQSPYPS 257

The following BLAST results are available for this feature:

BLAST of Moc08g02180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444844.1	5.9e-109	76.57	PREDICTED: RNA-binding protein 38-like [Cucumis melo]	[more]
XP_004152633.3	8.5e-108	76.49	RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_...	[more]
XP_038884547.1	3.0e-105	76.49	RNA-binding protein 38-like [Benincasa hispida]	[more]
KAG6598692.1	3.1e-94	70.98	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961976.1	5.3e-94	71.83	RNA-binding protein 38-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Moc08g02180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	6.7e-23	38.02	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9I8B3	1.9e-22	53.68	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q6DIV4	9.6e-22	37.13	RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1	[more]
Q9H0Z9	2.1e-21	39.29	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q5ZMA3	2.8e-21	36.49	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of Moc08g02180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBB0	2.8e-109	76.57	RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1	[more]
A0A0A0LLP2	1.4e-108	76.49	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV...	[more]
A0A6J1HBU2	2.6e-94	71.83	RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1HBJ1	1.2e-88	69.01	RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KAW8	6.8e-87	68.20	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=...	[more]

BLAST of Moc08g02180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.1	4.9e-53	49.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	5.4e-52	49.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	1.7e-45	46.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	2.3e-39	48.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	3.7e-37	44.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 18..90 e-value: 6.3E-26 score: 102.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 19..77 e-value: 4.0E-18 score: 65.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 17..94 score: 16.653631
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..110 e-value: 1.2E-25 score: 92.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..120
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 4..252
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 17..92 e-value: 1.30008E-41 score: 136.206
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 4..252
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g02180.1	Moc08g02180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding