Moc08g02060 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g02060
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	serine/arginine-rich splicing factor SC35-like
Location	chr8: 1409928 .. 1413136 (-)
RNA-Seq Expression	Moc08g02060
Synteny	Moc08g02060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCCCTAGGCGAGGGTGAGCCCTGAATCCGCCGCTCCGCTCTCAGCTCTCCAACTTTCAGTCTCAGCTGAATCCATTAATTTGCATTTGCAGAGACAGAAATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGTATCTCCCAACCCTAAATCTTTACTTCACTCTCAATCTCCATCTCTTTTTTCCTTTAATTTCTTCCCCTTTTTGTTTTTCTCAGGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGTTTCCCCCTTTATCTCTCTCTCTCTCTCTCTCGCGTTTAATCTTCTTCTTTTGATGTGTAATTTGTTGGTGGTAATTGCTGTTAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGTCAGCTTCAGTCCGACCAAAAACACACCTTATAACCTTCAGCTTTTTTCAATTTAACTTTAGCTGCTGTTTTTATGCCAAATCAAATTGGGTTTCTGCTTTCCTATTTAGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATGTAAATCTTCACCCTTTCAACTGCATAATTTCTCAAATTCTAATACGCACAAGTATGTTTTGATTCTCGCCCTTTTGGTTTGTTTATCAGTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGTGAGACTCCTTGTCTAAATGCATCTGAACTTGGAGTTCGAATCAGAGCTCTGGTGAAGAAATTTATGTTTTCTCGAGGTAATTGCCCTCATTTACTTGTGAATCCAAAAAACAGAAATCTATGTACTCTTCCGCATAGTCATATAGAGTGAAAGAGGTAATGCCTTCTTCAGTTCTTCTCGGGTTATGGATAAATTAAACTTCCTTGCTAGTTTACACGTCCTTTAGGATATTGATTTGCATCCTTTTATTGTTCTAATGGAATTGCTACATTTCTTGCGCATAGAATTAGCTTTGTGTACTAATCTCAGTTGATGTTGATGACCTCATATGGGTGATCAAAACTAGTTTGAAACATTGGTATTTTGTTAAATAGACAGACTATAAGGGCGTGATTTGTAATTATTCCTTTACTCAACATGTGTCTCTTTATGGGGTGCTGAAATTTCAGTGCTGTATGGTGTTTACTGCGCCATGCTATTAGGAAATTCTAGAAAGTATTTTTCTTGAGTTGGTTCATAGATGCAATCACTTCTGGCCTTGTCATTTTGCTCACCTAAATTCAGTAGTGATACATCTTCCTGTCATTAATCTCTTGAATCCATTATGTTCTAAATTTTGTGGTGTATGGAGAAGATTAAACAAAAAGAGCAAAGGAAGCAAGTTGTTGCAATTATTCTAGTTTGAAATGTGAATGGGCATGATGTGATCACGAGTCACCTTTATCAACAGAGTGAATTTTAATGCATAGTGTAGTTTTAATTATCGTGGATTGATCTAGTGGTACTAGAGCATGTGAAAAAGTAAAGGGACTTTGGGAGGGGGTTCAAACTCATGATAGCCATCACATAATATAATATCCAGCAAATTTCTTGACAATCAAATGTTATAGGGGTAGGAGCCGTGCTGTGAGATTAGTCGAAATGGAAAGCTAGTCTTGGGATTGCTGTTTTTACCTAAAAGTGAATGTTTAAGTGGGCTTTGACACTCATGACTCATGAGTATCAAAAAAGAAAAAAAAAAATCCTGTGCGGTTTTATATTTGAAGAAAAAGATTAAAAGCTACAAATTGTTATAAAACTAGAACAAAATAAAAACAAGGAGAATATTAAGAGCCTAAGATGGAGAAGAGATGAAGAGAACTAGAGAAGAGAGTAGAGCAAATATGAGATGTCTCTATTGAGTTGTTGTGAGATGTATTTCACAAATGCTCCATACAACAACTGTTTATAAGGTTACAAAAACCAACATAAAGCGGAGACATGAGAGTTATGGGGGTCAATGGGGCTATGGGAGCTATGGACATCTAATTTAGAATATTCATGACACTCTCCCATTACAAGTAACTTCTTTTGTCTCCAACATTGTTTTTCAGAAACTGGACTTCGGAGTAAATTACACATTATAAAAAACTATCTTAAGTTTGTTACAAACTTGTATTTGATCAACAACTATTGAGACAATTTTTTATGGGGCAGGGACAGAATGGTTTAGAAGGCTTGTCTTAGTCTGAGTTTCTAATGTTTACAAGCAGTTGATTGCTACCTCATTACTTTTAGCTTGTTATTCTACCCTTCTCATACTCATGGATTGACAAAAACATTTCAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGGTATTCAAATACTTTCTTAATATTTTATTAGTCATTATTTTTTAAAAGAACTTTTCCATTATAACATCTCGCACACCAAAGTCAATTATCTAACATTATTATTATATATCCTATTTTAAGTTTCTTGAGCATATCCAAACACAATTTTCATATAATTTCATGGACATCTCACATTTCCATGAACAAAGCAAGGTCCTTATTCTTCATTCATTCTAATTATTTTCATTCTCTTTGCTTTGCACTCTAAATGGAAATGGATTTGATACTGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCAAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGTGAGTTAGCCTGCCATTTTTATTGCTAATGATTTTTCTTTTTTATTTTTTTAATTATATATCTGGTGTCTGTCTAGTGATAGCCAAAATATGCCTGCAGGAATGA

mRNA sequence

ATGAGAGCCCTAGGCGAGGAGACAGAAATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCAAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGAATGA

Coding sequence (CDS)

ATGAGAGCCCTAGGCGAGGAGACAGAAATGTCGCACTTCGGGAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAGGTCGTTGACGTCTTCATCCCCAGAGACCGAAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGGTACAAGTATGCGGATGAAGCACAGAAGGCGATTGACAAGCTTGACGGGCGAATGTTGGATGGCAGAGAAATTATGGTTCAGTTCGCCAAGTATGGACCCAATGCAGAGAAAATTCGCAAGGGGAGGGTGATGGAATCATCGTCAAAGCCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGCACCGTGATGACTATAGGGATAGAGATCATAGGAGGAGAAGTCGCAGTAGAAGCAGGGACAGATATGATCGCGATAGACCCCACAGAGAGAGAGAACGCCATCGAAGTAGGAGTCGCAGTGCTAGTCCTGATCGCAACAAAGATCGCAGGAGGGGAAGAGATGATGATGAACGACGTAGTATAAGCAACTCTGATAGAAGCATGTCACCCACCCGGCGTTCCCCCAATACACGGAGAAGCATATCTCCGCGTAGGTCTCCATCTAGGAGTAGAAGCGATGATGGACTTTCACCAAAGCGAGAGAATGGCTCACCACTTTCACCGAAACTGGTTGATTCTCGAAGTCCTTCTCCTGCTAAATCTGATGCTGATGAATGA

Protein sequence

MRALGEETEMSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRSPSPAKSDADE

Homology

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BLAST of Moc08g02060 vs. NCBI nr
Match: XP_022131916.1 (serine/arginine-rich splicing factor SC35-like [Momordica charantia])

HSP 1 Score: 458.4 bits (1178), Expect = 4.2e-125
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 129
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120

Query: 130 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 189
           SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD
Sbjct: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180

Query: 190 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 249
           DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS
Sbjct: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240

Query: 250 PSPAKSDADE 260
           PSPAKSDADE
Sbjct: 241 PSPAKSDADE 250

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BLAST of Moc08g02060 vs. NCBI nr
Match: XP_008445340.1 (PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo])

HSP 1 Score: 401.4 bits (1030), Expect = 6.1e-108
Identity = 229/252 (90.87%), Postives = 239/252 (94.84%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 129
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 130 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 189
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 190 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 249
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 250 RSPSPAKSDADE 260
           RSPSPA+SDADE
Sbjct: 241 RSPSPARSDADE 251

[Close]

BLAST of Moc08g02060 vs. NCBI nr
Match: XP_011649457.1 (serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus])

HSP 1 Score: 400.2 bits (1027), Expect = 1.3e-107
Identity = 228/252 (90.48%), Postives = 240/252 (95.24%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 129
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 130 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 189
           SPRSRHRDD+RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 190 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 249
           DDERRS S+SDRSMSPTR SP+TRRSISPR++ PSR+RSDD  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSP-DDKPVDS 240

Query: 250 RSPSPAKSDADE 260
           RSPSPA+SDADE
Sbjct: 241 RSPSPARSDADE 251

[Close]

BLAST of Moc08g02060 vs. NCBI nr
Match: KAA0064834.1 (serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa])

HSP 1 Score: 399.4 bits (1025), Expect = 2.3e-107
Identity = 228/251 (90.84%), Postives = 238/251 (94.82%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 129
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 130 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 189
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 190 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 249
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 250 RSPSPAKSDAD 259
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

[Close]

BLAST of Moc08g02060 vs. NCBI nr
Match: XP_038884086.1 (serine/arginine-rich splicing factor SC35-like [Benincasa hispida])

HSP 1 Score: 396.7 bits (1018), Expect = 1.5e-106
Identity = 228/252 (90.48%), Postives = 237/252 (94.05%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 129
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 130 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 189
           SPRSRHRDD RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDPRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 190 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 249
           DDERRS S+SDRSMSPTRRSP+TRRSISPRR+ P R RSDD  SP R+NGS    K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRRSPDTRRSISPRRTPPPRGRSDDEHSPSRDNGSS-DDKPVDS 240

Query: 250 RSPSPAKSDADE 260
           RSPSPA+SDADE
Sbjct: 241 RSPSPARSDADE 251

[Close]

BLAST of Moc08g02060 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.6e-64
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 129
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 130 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 189
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 190 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 249
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 250 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 253
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

[Close]

BLAST of Moc08g02060 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 104/228 (45.61%), Postives = 131/228 (57.46%), Query Frame = 0


Query: 13  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 72
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 73  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 132
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 133 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 192
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 193 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 239
             RS S S RS S +R  P T    S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPPPT----SKRESNSRSRSKSPPKSPEEEGA 218

[Close]

BLAST of Moc08g02060 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0


Query: 13  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 72
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 73  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 132
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 133 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 192
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 193 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 239
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

[Close]

BLAST of Moc08g02060 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0


Query: 13  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 72
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 73  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 132
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 133 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 192
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 193 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 239
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

[Close]

BLAST of Moc08g02060 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-26
Identity = 103/228 (45.18%), Postives = 131/228 (57.46%), Query Frame = 0


Query: 13  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 72
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 73  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGRVMESSSKPRGRSRSRS 132
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 133 PRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDD 192
           PR R R   R R    RSRSRSR RY R    + R R RSRSRS S  R+  R + +   
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRS---KSRSRTRSRSRSTSKSRSARRSKSKSSS 182

Query: 193 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGS 239
             RS S S RS S +R  P     +S R S SRSRS        E G+
Sbjct: 183 VSRSRSRS-RSRSRSRSPP----PVSKRESKSRSRSKSPPKSPEEEGA 218

[Close]

BLAST of Moc08g02060 vs. ExPASy TrEMBL
Match: A0A6J1BQT1 (serine/arginine-rich splicing factor SC35-like OS=Momordica charantia OX=3673 GN=LOC111004937 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 2.0e-125
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 129
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 120

Query: 130 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 189
           SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD
Sbjct: 121 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDD 180

Query: 190 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 249
           DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS
Sbjct: 181 DERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRS 240

Query: 250 PSPAKSDADE 260
           PSPAKSDADE
Sbjct: 241 PSPAKSDADE 250

[Close]

BLAST of Moc08g02060 vs. ExPASy TrEMBL
Match: A0A1S3BCG4 (serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103488401 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.9e-108
Identity = 229/252 (90.87%), Postives = 239/252 (94.84%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 129
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 130 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 189
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 190 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 249
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 250 RSPSPAKSDADE 260
           RSPSPA+SDADE
Sbjct: 241 RSPSPARSDADE 251

[Close]

BLAST of Moc08g02060 vs. ExPASy TrEMBL
Match: A0A0A0LQG4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 6.5e-108
Identity = 228/252 (90.48%), Postives = 240/252 (95.24%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 129
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 130 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 189
           SPRSRHRDD+RDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 190 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 249
           DDERRS S+SDRSMSPTR SP+TRRSISPR++ PSR+RSDD  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSP-DDKPVDS 240

Query: 250 RSPSPAKSDADE 260
           RSPSPA+SDADE
Sbjct: 241 RSPSPARSDADE 251

[Close]

BLAST of Moc08g02060 vs. ExPASy TrEMBL
Match: A0A5A7VC44 (Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001460 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 1.1e-107
Identity = 228/251 (90.84%), Postives = 238/251 (94.82%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 129
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGRSRSR 120

Query: 130 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 189
           SPRSRHRDDYRDRD+RRRSRSRSR+RYDRDRPHR ERER+RSRSRSASPDR+KDRRRGRD
Sbjct: 121 SPRSRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRD 180

Query: 190 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 249
           DDERRS S+SDRSMSPTR SP+TRRSISPRR+ PSR RSD+  SPK +NGSP   K VDS
Sbjct: 181 DDERRSASHSDRSMSPTRHSPDTRRSISPRRTPPSRGRSDNERSPKGDNGSP-DDKPVDS 240

Query: 250 RSPSPAKSDAD 259
           RSPSPA+SDAD
Sbjct: 241 RSPSPARSDAD 250

[Close]

BLAST of Moc08g02060 vs. ExPASy TrEMBL
Match: A0A6J1K6Z8 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492207 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.8e-105
Identity = 225/252 (89.29%), Postives = 236/252 (93.65%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRGRSRSR 129
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKG+VMESSSK RGRSRSR
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGRSRSR 120

Query: 130 SPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHR-ERERHRSRSRSASPDRNKDRRRGRD 189
           SPR RHRDDYRDRD+RRRSRSRSR+R+DRDRPHR ERER+RSRSRSASPDR KDRRRGRD
Sbjct: 121 SPRPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRRRGRD 180

Query: 190 DDERRSISNSDRSMSPTRRSPNTRRSISPRRS-PSRSRSDDGLSPKRENGSPLSPKLVDS 249
           D ERRS S+SDRSMSP R SP+TRRSISPRR+ PSR RSD+  SP+R+NGSP   K VDS
Sbjct: 181 DVERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDEEHSPRRDNGSP-DDKPVDS 240

Query: 250 RSPSPAKSDADE 260
           RSPSPAKSDADE
Sbjct: 241 RSPSPAKSDADE 251

[Close]

BLAST of Moc08g02060 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-65
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 129
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 130 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 189
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 190 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 249
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 250 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 253
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

[Close]

BLAST of Moc08g02060 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-65
Identity = 173/283 (61.13%), Postives = 192/283 (67.84%), Query Frame = 0


Query: 10  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 69
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 70  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVME------------ 129
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KGRV+E            
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 130 ---------SSSKPRGRS--RSRSPRSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERE 189
                    S S PR RS  RSRSPR R RDDYR++D+R+RSRSRS DR +R        
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 190 RHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMSPTRRSPNT--------RRSISP- 249
           R R+RSRSASPD  K R RGR D+E RS S S  S SP RRSP +         R +SP 
Sbjct: 181 RRRTRSRSASPD-EKRRVRGRYDNESRSHSRS-LSASPARRSPRSSSPQKTSPAREVSPD 240

Query: 250 ----RRSPSRSRSDDGLSPKRENGSP---LSP-KLVDSRSPSP 253
                RSPS  RS    SP  +  SP   +SP +  + RSPSP
Sbjct: 241 KRSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSP 281

[Close]

BLAST of Moc08g02060 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-13
Identity = 102/254 (40.16%), Postives = 127/254 (50.00%), Query Frame = 0


Query: 26  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 85
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 86  LDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESS---------SKPRGRSRSRSP----- 145
           +DG +L GRE+ V FA+   N +K  + R  E           + PR  SRSRSP     
Sbjct: 97  MDGYLLLGRELTVVFAE--ENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRG 156

Query: 146 --RSRHRDDYR--DRDHRRRSRSRSRDRYDRDRPH-RERERHRSRSRSASPDRNKDRRRG 205
             RSR  D Y    R H  RS S   +RYD  R + R      SR RS +P R K   R 
Sbjct: 157 RSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKS--RS 216

Query: 206 RDDDERRSISNSD-RSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLV 260
                RRSIS S  RS SP   SP   RS+SPRRS SRS      SP+R   S  +P+  
Sbjct: 217 LSPSPRRSISRSPRRSRSP---SPKRNRSVSPRRSISRS-PRRSRSPRRSRRS-YTPEPA 276

[Close]

BLAST of Moc08g02060 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 85/245 (34.69%), Postives = 116/245 (47.35%), Query Frame = 0


Query: 13  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 72
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDL--PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 73  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKP-RGRSRSRSP 132
           +    +A +A  ++DG +L GRE+ V FA+              E+  KP   R+R R  
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--------------ENRKKPTEMRTRDRGG 146

Query: 133 RSRHRDDYRDRDHRRRSRSRSRDRYDRDRPHRERERHRSRSRS-ASPDRNKDRRRGRDDD 192
           RS          +R + R RS  RY R  P R   R RSRSR   SP   + + R     
Sbjct: 147 RS----------NRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQ 206

Query: 193 ERRSISNSDRSMSPTRRSPNTRRSISPRRSPSRSRSDDGLSPKRENGSPLSPKLVDSRSP 252
           +RR       S SP        RS SP R  S SRS       R+N S  +P+   S+SP
Sbjct: 207 DRRYEKERSYSRSPPHNGSRV-RSGSPGRVKSHSRSPRRSVSPRKNRS-YTPEQARSQSP 243

Query: 253 SPAKS 256
            P +S
Sbjct: 267 VPRQS 243

[Close]

BLAST of Moc08g02060 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-09
Identity = 67/203 (33.00%), Postives = 106/203 (52.22%), Query Frame = 0


Query: 27  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKL 86
           LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ ++
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 87  DGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKPRG---RSRSRSPRSRHRDDYRDRD 146
           + +++ GREI + FA+   N +  ++ R    +S   G   R+  RSPR R+R   R R 
Sbjct: 109 NHKVIGGREIAIVFAE--ENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRS 168

Query: 147 HRRRSRSRSRDRYDRDRPHRERERHRSRSRSASPDRNKDRRRGRDDDERRSISNSDRSMS 206
             RR    S+ R   D  +  R R RS SRS  P RN+   + R+               
Sbjct: 169 PPRRESRHSKVR--EDDLYSPRRRSRSISRSPLP-RNEREYKSRN--------------- 228

Query: 207 PTRRSPNTRRSISPRRSPSRSRS 227
              RSP   R ++P RS   SRS
Sbjct: 229 --CRSPREERVLTPIRSRCLSRS 229

The following BLAST results are available for this feature:

BLAST of Moc08g02060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131916.1	4.2e-125	100.00	serine/arginine-rich splicing factor SC35-like [Momordica charantia]	[more]
XP_008445340.1	6.1e-108	90.87	PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo]	[more]
XP_011649457.1	1.3e-107	90.48	serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus]	[more]
KAA0064834.1	2.3e-107	90.84	serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa]	[more]
XP_038884086.1	1.5e-106	90.48	serine/arginine-rich splicing factor SC35-like [Benincasa hispida]	[more]

BLAST of Moc08g02060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	5.6e-64	61.13	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	3.5e-26	45.61	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q3MHR5	6.0e-26	45.18	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	6.0e-26	45.18	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	6.0e-26	45.18	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of Moc08g02060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQT1	2.0e-125	100.00	serine/arginine-rich splicing factor SC35-like OS=Momordica charantia OX=3673 GN...	[more]
A0A1S3BCG4	2.9e-108	90.87	serine/arginine-rich splicing factor SC35-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LQG4	6.5e-108	90.48	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G345920 PE=4 SV...	[more]
A0A5A7VC44	1.1e-107	90.84	Serine/arginine-rich splicing factor SC35-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1K6Z8	1.8e-105	89.29	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX...	[more]

BLAST of Moc08g02060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	4.0e-65	61.13	ortholog of human splicing factor SC35	[more]
AT5G64200.2	4.0e-65	61.13	ortholog of human splicing factor SC35	[more]
AT1G55310.1	1.2e-13	40.16	SC35-like splicing factor 33	[more]
AT3G13570.1	3.6e-10	34.69	SC35-like splicing factor 30A	[more]
AT5G18810.1	1.8e-09	33.00	SC35-like splicing factor 28	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 26..99 e-value: 5.3E-25 score: 99.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 27..96 e-value: 6.7E-21 score: 73.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 25..103 score: 19.570105
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..115 e-value: 5.8E-28 score: 99.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..197
None	No IPR available	PANTHER	PTHR23147:SF161	OS08G0486200 PROTEIN	coord: 10..245
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 10..245
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 16..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g02060.1	Moc08g02060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding