Moc08g01580 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g01580
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Locationchr8: 1018026 .. 1018662 (-)
RNA-Seq ExpressionMoc08g01580
SyntenyMoc08g01580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTACCTTATTGCCATAGCTGCACTAATTCACCGGAGACTGTTGCCTATTCACTTTTCTACTGCAAGCGAGCACGGAAAATCTGGAATAGTCTTTTCGCTGCTGTTCGGATCTCTCAGAACCAAAATTAGTGTTTTATGGACCTTTGGGAGGCGATCTCAACTTCGGTCAACTCGGTAAATTGGGATCTCGCAGCAACGAACTGTTGGGCAATTTGGGCGGATCGTAACTCTGTGCTTAATGGAAAGCAACTTATGTCAGTCGACCAAAAATGTACCTGGATTTCTTCATATGCCACAACCTACGAGCAATTGCAAGTAGATCAGAGCCTTCGTCCGGCCATGCAACGCTCTACCCCTATCGCCAGCCCATGGGTTGGAATCCCCCTGAAGATAACTTCTTGAAGCTCAATGTCGATGCAGCTTGTAAACCCAATTGCTCAGGCTTCGGTCTTATTATTCGAGATTCTAGCGGTTCGATCATGGCCGCAAAATTCCAAGTGGTTCCCGTCAACTTTTCTCCGCTGCTTGCTGAAATCAAAGTCATCATCGAGACCTGGCAATCTCTCTTTAATCTTCTCATTTGCAGGTTGAATCAGACTCAGTTAAACTCCTTAATGGTGAAGTTTCTATGA

mRNA sequence

ATGTGGTACCTTATTGCCATAGCTGCACTAATTCACCGGAGACTGTTGCCTATTCACTTTTCTACTGCAAGCGAGCACGGAAAATCTGGAATAGTCTTTTCGCTGCTGTTCGGATCTCTCAGAACCAAAATTAGTGTTTTATGGACCTTTGGGAGGCGATCTCAACTTCGGTCAACTCGTCGACCAAAAATGTACCTGGATTTCTTCATATGCCACAACCTACGAGCAATTGCAAGTAGATCAGAGCCTTCGTCCGGCCATGCAACGCTCTACCCCTATCGCCAGCCCATGGGTTGGAATCCCCCTGAAGATAACTTCTTGAAGCTCAATGTCGATGCAGCTTGTAAACCCAATTGCTCAGGCTTCGGTCTTATTATTCGAGATTCTAGCGGTTCGATCATGGCCGCAAAATTCCAAGTGGTTCCCGTCAACTTTTCTCCGCTGCTTGCTGAAATCAAAGTCATCATCGAGACCTGGCAATCTCTCTTTAATCTTCTCATTTGCAGGTTGAATCAGACTCAGTTAAACTCCTTAATGGTGAAGTTTCTATGA

Coding sequence (CDS)

ATGTGGTACCTTATTGCCATAGCTGCACTAATTCACCGGAGACTGTTGCCTATTCACTTTTCTACTGCAAGCGAGCACGGAAAATCTGGAATAGTCTTTTCGCTGCTGTTCGGATCTCTCAGAACCAAAATTAGTGTTTTATGGACCTTTGGGAGGCGATCTCAACTTCGGTCAACTCGTCGACCAAAAATGTACCTGGATTTCTTCATATGCCACAACCTACGAGCAATTGCAAGTAGATCAGAGCCTTCGTCCGGCCATGCAACGCTCTACCCCTATCGCCAGCCCATGGGTTGGAATCCCCCTGAAGATAACTTCTTGAAGCTCAATGTCGATGCAGCTTGTAAACCCAATTGCTCAGGCTTCGGTCTTATTATTCGAGATTCTAGCGGTTCGATCATGGCCGCAAAATTCCAAGTGGTTCCCGTCAACTTTTCTCCGCTGCTTGCTGAAATCAAAGTCATCATCGAGACCTGGCAATCTCTCTTTAATCTTCTCATTTGCAGGTTGAATCAGACTCAGTTAAACTCCTTAATGGTGAAGTTTCTATGA

Protein sequence

MWYLIAIAALIHRRLLPIHFSTASEHGKSGIVFSLLFGSLRTKISVLWTFGRRSQLRSTRRPKMYLDFFICHNLRAIASRSEPSSGHATLYPYRQPMGWNPPEDNFLKLNVDAACKPNCSGFGLIIRDSSGSIMAAKFQVVPVNFSPLLAEIKVIIETWQSLFNLLICRLNQTQLNSLMVKFL
Homology
BLAST of Moc08g01580 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-06
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 99  WNPPEDNFLKLNVDAACKPNCSGFGLIIRDSSGSIMAAKFQVVPVNFSPLLAEIKVIIE 158
           W PP D+ +K+N DAAC+   +G GLIIRD  G ++ AK   +P+  +PL AEI+ I+E
Sbjct: 115 WLPPRDSAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILE 173

BLAST of Moc08g01580 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-06
Identity = 40/95 (42.11%), Postives = 51/95 (53.68%), Query Frame = 0

Query: 65   YLDFFICHNLRAIASRSEP--SSGHATLYPYRQPMGWNPPEDNFLKLNVDAACKPNCSGF 124
            +L  F+  + +A  S   P   S H  +  Y     W P     LKLN DAAC+   + F
Sbjct: 1263 WLTPFLDSHSQAQMSNYSPRTQSNHRPVVQY-----WRPSSSVSLKLNTDAACRGASTSF 1322

Query: 125  GLIIRDSSGSIMAAKFQVVPVNFSPLLAEIKVIIE 158
            G IIRDSS S++AA    VP   SPLLAEI+ I+E
Sbjct: 1323 GCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILE 1352

BLAST of Moc08g01580 vs. NCBI nr
Match: XP_038722072.1 (uncharacterized protein LOC120014227 [Tripterygium wilfordii])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 41/137 (29.93%), Postives = 65/137 (47.45%), Query Frame = 0

Query: 17  PIHFSTASEHGKSGIVFSLLFGSLRTKISVLWTFGR-RSQ-LRSTRRPKMYLDFFICHNL 76
           P   + + EH  S IV     G      + LW   R R+Q L + R  K      +    
Sbjct: 44  PTSGNCSIEHWLSKIVEEFSKGQYSRIFTCLWHIWRMRNQILHNNRSFKSEEVGRMMTTF 103

Query: 77  RAIASRSEPSSGHATLYPYRQPMGWNPPEDNFLKLNVDAACKPNCSGFGLIIRDSSGSIM 136
            A    ++P + H +    + P+ W PP+ + +K+N DAA + +  G G+I RD+ G+ +
Sbjct: 104 LADYQEAQPPNLHGSSRISQPPIKWRPPQTSVIKINFDAALRDSKVGIGVIARDAEGTHI 163

Query: 137 AAKFQVVPVNFSPLLAE 152
           A+K   VP   +PL AE
Sbjct: 164 ASKTICVPGPLNPLFAE 180

BLAST of Moc08g01580 vs. NCBI nr
Match: TXG68182.1 (hypothetical protein EZV62_003117 [Acer yangbiense])

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-04
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 99  WNPPEDNFLKLNVDAACKPN--CSGFGLIIRDSSGSIMAAKFQVVPVNFSPLLAEIKVII 157
           W PP +  +K+N DAA   N    GFGL++RD  G ++A+  Q + VNFSPL+AE   I+
Sbjct: 366 WKPPVEGTIKINCDAALDMNRGVVGFGLVVRDFGGVVLASCVQHIQVNFSPLIAEAMTIL 425

BLAST of Moc08g01580 vs. NCBI nr
Match: TXG57169.1 (hypothetical protein EZV62_018482 [Acer yangbiense])

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-04
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 99  WNPPEDNFLKLNVDAACKPN--CSGFGLIIRDSSGSIMAAKFQVVPVNFSPLLAEIKVII 157
           W PP +  +K+N DAA   N    GFGL++RD  G ++A+  Q + VNFSPL+AE   I+
Sbjct: 161 WKPPVEGTIKINCDAALDMNRGVVGFGLVVRDFGGVVLASCVQHIQVNFSPLIAEAMTIL 220

BLAST of Moc08g01580 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 99  WNPPEDNFLKLNVDAACKPNCSGFGLIIRDSSGSIMAAKFQVVPVNFSPLLAEIKVIIE 158
           W PP D+ +K+N DAAC+   +G GLIIRD  G ++ AK   +P+  +PL AEI+ I+E
Sbjct: 115 WLPPRDSAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILE 173

BLAST of Moc08g01580 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-06
Identity = 40/95 (42.11%), Postives = 51/95 (53.68%), Query Frame = 0

Query: 65   YLDFFICHNLRAIASRSEP--SSGHATLYPYRQPMGWNPPEDNFLKLNVDAACKPNCSGF 124
            +L  F+  + +A  S   P   S H  +  Y     W P     LKLN DAAC+   + F
Sbjct: 1263 WLTPFLDSHSQAQMSNYSPRTQSNHRPVVQY-----WRPSSSVSLKLNTDAACRGASTSF 1322

Query: 125  GLIIRDSSGSIMAAKFQVVPVNFSPLLAEIKVIIE 158
            G IIRDSS S++AA    VP   SPLLAEI+ I+E
Sbjct: 1323 GCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILE 1352

BLAST of Moc08g01580 vs. ExPASy TrEMBL
Match: A0A5C7HK40 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018482 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 99  WNPPEDNFLKLNVDAACKPN--CSGFGLIIRDSSGSIMAAKFQVVPVNFSPLLAEIKVII 157
           W PP +  +K+N DAA   N    GFGL++RD  G ++A+  Q + VNFSPL+AE   I+
Sbjct: 161 WKPPVEGTIKINCDAALDMNRGVVGFGLVVRDFGGVVLASCVQHIQVNFSPLIAEAMTIL 220

BLAST of Moc08g01580 vs. ExPASy TrEMBL
Match: A0A5C7IHD9 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_003117 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 99  WNPPEDNFLKLNVDAACKPN--CSGFGLIIRDSSGSIMAAKFQVVPVNFSPLLAEIKVII 157
           W PP +  +K+N DAA   N    GFGL++RD  G ++A+  Q + VNFSPL+AE   I+
Sbjct: 366 WKPPVEGTIKINCDAALDMNRGVVGFGLVVRDFGGVVLASCVQHIQVNFSPLIAEAMTIL 425

BLAST of Moc08g01580 vs. ExPASy TrEMBL
Match: A0A7N2MMQ4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-04
Identity = 33/102 (32.35%), Postives = 50/102 (49.02%), Query Frame = 0

Query: 46  VLWTFGRRSQLRSTRRPKMYLDFFICHNL-RAIASRSEPSSGHATLYPYRQPMGWNPPED 105
           VLW    R       +P + LD  + H+  R + S S P    +T     QP  W PP+D
Sbjct: 161 VLWNLWNRRNNLQLGKPTLPLDKVLEHSRERQLESHSSPL--FSTKQRSTQPAAWIPPQD 220

Query: 106 NFLKLNVDAA--CKPNCSGFGLIIRDSSGSIMAAKFQVVPVN 145
           N+ K+N D A   +   +G G++IR + G +MA+  +  P N
Sbjct: 221 NWYKINFDGATFAEDKSAGMGVVIRKNKGRVMASFSEDSPAN 260

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022131661.12.8e-0647.46uncharacterized protein LOC111004786 [Momordica charantia][more]
XP_022158377.14.7e-0642.11uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_038722072.11.5e-0429.93uncharacterized protein LOC120014227 [Tripterygium wilfordii][more]
TXG68182.13.4e-0445.00hypothetical protein EZV62_003117 [Acer yangbiense][more]
TXG57169.13.4e-0445.00hypothetical protein EZV62_018482 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BQ491.3e-0647.46uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6J1DX302.3e-0642.11uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5C7HK401.6e-0445.00RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018482 ... [more]
A0A5C7IHD91.6e-0445.00RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_003117 ... [more]
A0A7N2MMQ44.8e-0432.35Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g01580.1Moc08g01580.1mRNA