Moc08g00090 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g00090
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Locationchr8: 58166 .. 62762 (-)
RNA-Seq ExpressionMoc08g00090
SyntenyMoc08g00090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTTGCTGTACCTGGAAAACCCTACGAATGTCCTCCTCTTCCACAAGAACTCTCATTTGCCGTTCCTCTTCCTCATCGTCTGCGTCCCATTTTGTGTCCAGACCCACTAAGCCTACTGGACTTCCTTCTGCTAAGCCGGCAGCATCTCCCCGTTTCTCTGTTCAGAAGCTTACCAACCTCAGGTAAGTAGGTTTTCTCATTCTTGTTTCTGTTACGGCATTCGCTCTTTTTCGATGTTGAAACAACAATCTTTCTCCAAAAAAAAAAAAAAAGATGTTAAAACAGCATTAATGAGTGATTTAAGGTCGTCTTATTGACTCTAAGATTTGATATTTCTCAATTTTCATAGAGAGCATTTAAGTTACTTTGCCATACCGTTTTCCTTTCTCTTCTTTTTAGTTTTTACTAGTTTCTTGGATTTGATCCATGTCATGATCGGCTTCTATTTCCCTTAAAAGGTGGCCATTTTCCTCTTCTGAAACCCAGTATAGTATTGACCCCAGTTTCTTAAGTACAATTACTGGGTTAACTCGTCTGTTTTTTTCCCATTTCACGTTCAATTTGAGGGATTCTCTGCATTCCTCTACTTTCTGAAGATGATAATCACGACGGCTCATGAGTTTTTATGCGAAATGTGCCTACTCTTTCAGGCTTCCAGTGGAGCTGTCAAGTGTGCAGTCGCTAATGCCACTGCACAGTGTTACTGCTTCTGCCTTATTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGTAACCTTTCAATTTTTATCTCCACTTCCATACATTCAAAATGAGCTCACCTAAAATTTCCAACTCGTCTACTTATTACGTTTATTTCATAGTAGTTTATCAAGCTAAGGGGTGGAATACCACAAAGGGAAAGGGTCTAATTTTATTATTATTATTATTTTAATTTGTACATGCCTTATTAAACCACCCATAAGAACTATATTTTCACTTTCATCTGGATAATATCCAACAACGACTCCATTGAGTGAATAATGTGCTCGGTCTTGTACCCATATGTTCTCCCGTCCTACATCAAAAAAGAAAAAAAGAACGTCTCATGTAATAAATATACGGTAATGCCTTCTAATTGTCAGTGTTAACCTTTTCATTTCCGTCTTTATGTTAAATTACTGCTACTCTTAAAAGTTAAAAGTTAAACGCTTAATTGCTTCTATTTGATTAGAGTTAATTTAATATTTTGGATTGGTTTTGCTATTTTCTGTGAGATTGAATTTTAGTTTGTTAATGTCGTTCAATACATAGAGTCATAGACCGTTGATTTTAAAATGTTGAAGGATGCAAGGATTGTTTTACAGCATCTCTTGCTTCAATTCCATTTTAAGTTACTACTAATTCCAAAAAGCATGCTTACGATAAATCGTGGTTTAACCCCATGAGTTGGTCAAGTATGCATACTAATTCCATTGTATGCCTTTTTTTCCTCAAAAAAAAAAAAAAATCTTGATAAGAAACAAAAACTAGTTACAAACTTTCAACTTTCTACATAAAAAAACCAAAAAATAAACAGAAAAATGAAAAAGACCCTCCCATACCGCAAACTAATATAGATACAGCCTTGAAATTACACGATAATGATCTTACTTTAATAGAAGCAAAACTATTAATAATAAAACTATGGGAACTTACATAAAACTTTTATATTTGGGTTAATCTTAGTGATAGATTAATTTTGAAAAGATTTGGAGAAAGACACGAAAGAGCTTCATGAACTTGATTGTCTCTACAATCTTTCTTCCCATGGAACAGACTTTCAGAAGATCCTCTTGTTTCTTTCATACCAAATAGTGGAGATTCTAGCTTATCTGCTTTTAAATGGAGTACCTTTCCTTTCCAAGTTATGATGAGCACATTCATTGATTTAGTGTAGAGTTATAGTAGACCCACTCCACTTTCTATAACGTGGTTTACTAGTTCCTTCTGGGCCATCCGATAACGTGATTTACTAAAAAACACTGCAATTTGAGTTAACCCTGAAATTTAATAATTATAAAAAGAATTAGAGAAAGAACATCTGGAAGAAGTGTAAATTTAGCCAGCTCAACCAATTCCTCCAAACCCATTTTTCTTGCCATTGAATATTCAGAAGTTCCTCACAAGCCGGATGTTCCTAAGGGTTTCTTTTACTGCATTTATCCATAGAATTTTCACTTTCCTTCTCAATTTATGGCCCCACGAAATCTACATAGTAGTTAGTACCCCCTTTTGTTGTTCCCCCAAACTCATGGCACATGGAATTGTTTCAGTAAAAATTCCCAACATTTCCTGCTGTAACAGCCTTAGAGATGGTGTTTTAACATTTTCTTCAGTTTCACAATAAAATGCAGACCCGTTTGGTTGTAGAGTAGTAATATTGTGATATCTCTTTTGAAATTTCTCCGCCATATTTAATACTTTTAGATACATGGTTCGGAAGAGAAATTTAATTTTGGTTAAAATACTATTTTGGTCCAGGTACTTTTAACTTTGGTTTATTTTGGTCCCTGTATCTTCAAAATGTTCATTTTGGTCTATGTATTTTCAATTTTGGTTTATTTTTGTTCGCTTTACTTTCAAAATGTTCGTTTTAGTCCTTGTAATTTTTAAAAATGACCATTTTGGTCCATTAATTTTATTTTTAATCTCATTTTTTCTATCACAACTTCAACAGATACTACACTCCTTATATTTATTAAAATGTAACCATGACTTTATATTAGATTTCCTTGTGTAGAATTTGTGTCAAAATTTTCCAAATAGGGACAAGGACTAAATTGAACATTTTGAAAGTGTACGAACTAAATTAAACTATAGTTGAAAGTACATGGACCAAAATGAACATTTCGAAAGTACATGGACTAAAATGAACCAAAACAGAAAGTATAAGGGCTAAAATAATATTTGAACTTTTAATTTTCTTGAGATCCATTTAATTCTAAAGTACCATACGCATGATTTTACCTATCAGTTTCTTGTAAAGGTTAATATTATTGCATACCTTTCTTTTTTCAAAACAGGAGACATTTCGTTGCAGCAATGCATGTAATGCATGCTACAACCTAAACCATAAATAATTCTTTTATATGAAAACTCCCCAATTGGAAATTGGAATTATAAATTTGAGAACTATAATTACAAAAAGAACTTGACAGAGCACTTTAACCGGATACATAATGCTTCACTTTTTCAACTCTTTCTTCCAAGTTGTTCCTTTTCCCTTGAAAGAATTCGTTGGTTTCTCTTGAAGACTCTGACTATGTTATCCTAGAGTACTTTTACTCCTTTTTAAACTAAATCATCATCCTACTAACTGACTGAAATTATTCTTAGGACTATAACCAAACATCTAAAGGGCAGCCGAAACATTGAAAAAAGAATTCTCAACATTCTGTTCTACAGGAACAATGAGAAGAATAGATGTGGCTGATTCTCTTTTTCCCTTCATGCATAATATGCAGCAATTAGGTCTAAGGACAGGGTTAGAACTTTTCCTCTGTCAGTTGTATCACGATTTCCAAAGCAAAGCATTAACTTCCTTCAGGCTTTTCAATTTTTGTAACGGTTTCATCAATACCTTTGGCTTTGACATTAGAACAGACAAATCGAGCTCCTGAATCTAAGATTTCACTGGGAAAGTGAGTAGTGTCCAGAAGTCTCTAAGTCCAGCTCTTTTTATCTTCCCTTTGACCTGAAGCAAATTCTTCAAGTTGGTTTAACAAAGCCTTAACCTCACCCATTTCTTCCTCCAGCATCTTCAAGCCACAATTCCAGGAAAGCATAAACTTGTGATATTTCTATTAACCTTGGTAATTTAATAGCAAGTGATTCATAACCGATCCATATATGATTCATCCTTCCAAAAATAAGTCTTCCTCTTGTTTTGAATATGACACTTTAAATTGCATACATTTTTACTTTTTTTATGCCACTCATATTCATCATTGTCATAGATGGTTGCCATTATATTATGCCACAACTCGTTTTTCTAAATCTCCACACCCATTTTGAAGGTAAAGCTTCATTCTTTTTCCTTAGGTTTCTAATTCCCAATCCACTACAAAAGGTTTTGAACATTATGATGCCACCATCGATTCCCTCATTTTGCCTTATTTGTTCCCTTCGCTGAGAGAAATTTCCTATATTTCTCTCTAAGAATGCAACCTGACATGTAACACCTGGGAATGGCTGATAGCACCCTTTGCACATCGTCAACTCGTTCTCTTTTGATAGACAAAACAATCTCCATTTTTCCTACCTGCTCAATGTATTATTAACCATTGGTGGCCAAAAAATAGCTTTTATAGGATTAACCCCCGAGTGGCATTTTCAAATAATTCATTGGAAGATTTCCATCCTAACTTTACTCCTCGAATAATGTTCTTGTGTAATGAAAATCTTTGCATCCCAACTCGTAATTTTGGAAGAAAAAAATAGAATGGTCGTGACTGCGGTACTTTGGAAGTCCCGGGATTTACCCTTTTTCTCTTCCCTTTTTTCCCCCACAAATTTTGTTTAGAAAGTTTTGTTTGTATTTTGTGTTGTACAGGATTTGCTACACCGCTATAA

mRNA sequence

ATGGCGGCTTGCTGTACCTGGAAAACCCTACGAATGTCCTCCTCTTCCACAAGAACTCTCATTTGCCGTTCCTCTTCCTCATCGTCTGCGTCCCATTTTGTGTCCAGACCCACTAAGCCTACTGGACTTCCTTCTGCTAAGCCGGCAGCATCTCCCCGTTTCTCTGTTCAGAAGCTTACCAACCTCAGGCTTCCAGTGGAGCTGTCAAGTGTGCAGTCGCTAATGCCACTGCACAGTGTTACTGCTTCTGCCTTATTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGATTTGCTACACCGCTATAA

Coding sequence (CDS)

ATGGCGGCTTGCTGTACCTGGAAAACCCTACGAATGTCCTCCTCTTCCACAAGAACTCTCATTTGCCGTTCCTCTTCCTCATCGTCTGCGTCCCATTTTGTGTCCAGACCCACTAAGCCTACTGGACTTCCTTCTGCTAAGCCGGCAGCATCTCCCCGTTTCTCTGTTCAGAAGCTTACCAACCTCAGGCTTCCAGTGGAGCTGTCAAGTGTGCAGTCGCTAATGCCACTGCACAGTGTTACTGCTTCTGCCTTATTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGATTTGCTACACCGCTATAA

Protein sequence

MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL
Homology
[Close]
BLAST of Moc08g00090 vs. NCBI nr
Match: XP_022159141.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 204.1 bits (518), Expect = 5.9e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60
           MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT
Sbjct: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60

Query: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL 109
           NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL
Sbjct: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL 108

[Close]
BLAST of Moc08g00090 vs. NCBI nr
Match: XP_038885251.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 9.5e-39
Identity = 93/108 (86.11%), Postives = 97/108 (89.81%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60
           MAACC+WKTLR+SSSS RTL+ RSSSS SASHFVS+PT   GLPSAKP AS RF VQKLT
Sbjct: 1   MAACCSWKTLRISSSSARTLLHRSSSSPSASHFVSKPTMSAGLPSAKPPASSRFYVQKLT 60

Query: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL 109
           N RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWG LSEGFATPL
Sbjct: 61  NFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGYLSEGFATPL 108

[Close]
BLAST of Moc08g00090 vs. NCBI nr
Match: XP_022961783.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita moschata] >KAG6598206.1 hypothetical protein SDJN03_07984, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.4 bits (407), Expect = 4.4e-36
Identity = 91/109 (83.49%), Postives = 95/109 (87.16%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSS-SSASHFVSRPTKPTGLPSAKPAASPRFSVQKL 60
           MAAC TWKTLR+SSSS RTL+ RSSSS  SASH VS+PT    LPSAKP+AS RFSV KL
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 61  TNLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL 109
           TN RLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSEGFATPL
Sbjct: 61  TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEGFATPL 109

[Close]
BLAST of Moc08g00090 vs. NCBI nr
Match: XP_038885250.1 (uncharacterized protein LOC120075707 isoform X1 [Benincasa hispida])

HSP 1 Score: 154.1 bits (388), Expect = 7.0e-34
Identity = 93/139 (66.91%), Postives = 97/139 (69.78%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60
           MAACC+WKTLR+SSSS RTL+ RSSSS SASHFVS+PT   GLPSAKP AS RF VQKLT
Sbjct: 1   MAACCSWKTLRISSSSARTLLHRSSSSPSASHFVSKPTMSAGLPSAKPPASSRFYVQKLT 60

Query: 61  N-------------------------------LRLPVELSSVQSLMPLHSVTASALFTSL 109
           N                                RLPVELSSVQSLMPLHSVTASALFTSL
Sbjct: 61  NFSQFMGFYAFLYLLKTIIVTTHCFYAKCRCFFRLPVELSSVQSLMPLHSVTASALFTSL 120

[Close]
BLAST of Moc08g00090 vs. NCBI nr
Match: XP_022996536.1 (uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953.1 uncharacterized protein LOC111805899 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 9.2e-34
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60
           MAAC TWKTLR+SSSS RTL+ RSSSS SASH VS+PT    LPSAKP+AS RFSV KLT
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLT 60

Query: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 103
           N RLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Sbjct: 61  NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 102

[Close]
BLAST of Moc08g00090 vs. ExPASy TrEMBL
Match: A0A6J1E309 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111025568 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.9e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60
           MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT
Sbjct: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60

Query: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL 109
           NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL
Sbjct: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL 108

[Close]
BLAST of Moc08g00090 vs. ExPASy TrEMBL
Match: A0A6J1HCT7 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462447 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-36
Identity = 91/109 (83.49%), Postives = 95/109 (87.16%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSS-SSASHFVSRPTKPTGLPSAKPAASPRFSVQKL 60
           MAAC TWKTLR+SSSS RTL+ RSSSS  SASH VS+PT    LPSAKP+AS RFSV KL
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 61  TNLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL 109
           TN RLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSEGFATPL
Sbjct: 61  TNFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSEGFATPL 109

[Close]
BLAST of Moc08g00090 vs. ExPASy TrEMBL
Match: A0A6J1K524 (uncharacterized protein LOC111491756 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491756 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60
           MAAC TWKTLR+SSSS RTL+ RSSSS SASH VS+PT    LPSAKP+AS RFSV KLT
Sbjct: 1   MAACSTWKTLRISSSSARTLLQRSSSSPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLT 60

Query: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 103
           N RLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Sbjct: 61  NFRLPVELSSVQSLMPLHSATASALFTSLLSLHNNSWGCLSE 102

[Close]
BLAST of Moc08g00090 vs. ExPASy TrEMBL
Match: A0A0A0L605 (Radical_SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G667190 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.0e-31
Identity = 78/102 (76.47%), Postives = 86/102 (84.31%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60
           MAACC+WKT+ +SSSS R L+ RSSSS SASHFVS PT   GLPSAKP AS RFSV +LT
Sbjct: 1   MAACCSWKTIPISSSSARGLLHRSSSSPSASHFVSNPTMSGGLPSAKPPASSRFSVHRLT 60

Query: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 103
           N RLPVEL+S+QSLMPL SVTAS LFTSLLS HNNSWGCLS+
Sbjct: 61  NFRLPVELASMQSLMPLRSVTASPLFTSLLSFHNNSWGCLSK 102

[Close]
BLAST of Moc08g00090 vs. ExPASy TrEMBL
Match: A0A5D3D8K9 (Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00010 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.4e-27
Identity = 75/102 (73.53%), Postives = 84/102 (82.35%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT 60
           MAACC+WKT+ +SSSS R L+ R SSS SASHFVS PT   GL SA+PAAS RFSVQ+LT
Sbjct: 1   MAACCSWKTIPISSSSARALLHRPSSSPSASHFVSIPTMSGGLHSARPAASSRFSVQRLT 60

Query: 61  NLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 103
           N  LPVEL+S+QSLMPL SVTASALFTSLLS HNNS  CLS+
Sbjct: 61  NFSLPVELASMQSLMPLRSVTASALFTSLLSFHNNSRRCLSK 102

[Close]
BLAST of Moc08g00090 vs. TAIR 10
Match: AT1G70350.1 (unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-14
Identity = 56/109 (51.38%), Postives = 74/109 (67.89%), Query Frame = 0 

Query: 1   MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAK-PAASPRFSVQKL 60
           MAA    + L+ SSSS + L  RSS+++SA    S+  K  G+      ++S R S+++L
Sbjct: 1   MAANGVRRALQASSSSGKILFGRSSAATSA----SKIGKSAGIAFGNGSSSSTRPSLRRL 60

Query: 61  TNLRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL 109
           T  R+PVELS+  SL+PLHSVTASAL TSLLSL N +W CLSEGFA+ L
Sbjct: 61  TFSRVPVELSAGISLIPLHSVTASALLTSLLSLSNQNWSCLSEGFASTL 105

[Close]
BLAST of Moc08g00090 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 0 

Query: 12  MSSSSTRTLICRSSSS--SSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT-NLRLPVEL 71
           M+SSS    ICR SS   S            + LPS   ++SP  +  ++  + RLPVEL
Sbjct: 1   MASSSK---ICRLSSKIHSLTQKLSKTNVHISSLPSPIKSSSPSSATSRINQSFRLPVEL 60

Query: 72  SSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEGFATPL 109
           S   S++PLHS  ASA   S LS+ + SWG + +G + PL
Sbjct: 61  SCCLSMLPLHSAIASARLISSLSVESKSWGLVPQGISMPL 97

[Close]
BLAST of Moc08g00090 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 5.6e-05
Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 0 

Query: 12  MSSSSTRTLICRSSSS--SSASHFVSRPTKPTGLPSAKPAASPRFSVQKLT-NLRLPVEL 71
           M+SSS    ICR SS   S            + LPS   ++SP  +  ++  + RLPVEL
Sbjct: 1   MASSSK---ICRLSSKIHSLTQKLSKTNVHISSLPSPIKSSSPSSATSRINQSFRLPVEL 60

Query: 72  SSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSEG 104
           S   S++PLHS  ASA   S LS+ + SWG + +G
Sbjct: 61  SCCLSMLPLHSAIASARLISSLSVESKSWGLVPQG 92

[Close]
BLAST of Moc08g00090 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 0 

Query: 15  SSTRTLICRSSSSSSAS---HFVSRPTKPTGLPSAKPAASPRFSVQKLTNLRLPVELS-S 74
           S  R+++  +SS S+A+    F S+      L  A    SP      L+ LR PVELS  
Sbjct: 8   SGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSP-----LLSPLRNPVELSFC 67

Query: 75  VQSLMPLHSVTASALFTSLLSLHNNSWGCLSEG 104
           V+SL+P HS TASAL TS LS+   ++G LS+G
Sbjct: 68  VESLLPYHSATASALMTSKLSISGQTYGWLSDG 95

[Close]
BLAST of Moc08g00090 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 41.2 bits (95), Expect = 6.2e-04
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 0 

Query: 15  SSTRTLICRSSSSSSAS---HFVSRPTKPTGLPSAKPAASPRFSVQKLTNLRLPVELS-S 74
           S  R+++  +SS S+A+    F S+      L  A    SP      L+ LR PVELS  
Sbjct: 8   SGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSP-----LLSPLRNPVELSFC 67

Query: 75  VQSLMPLHSVTASALFTSLLSLHNNSWGCLSE 103
           V+SL+P HS TASAL TS LS+   ++G LS+
Sbjct: 68  VESLLPYHSATASALMTSKLSISGQTYGWLSD 94

The following BLAST results are available for this feature:
BLAST of Moc08g00090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159141.15.9e-49100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica chara... [more]
XP_038885251.19.5e-3986.11protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida][more]
XP_022961783.14.4e-3683.49protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita mosch... [more]
XP_038885250.17.0e-3466.91uncharacterized protein LOC120075707 isoform X1 [Benincasa hispida][more]
XP_022996536.19.2e-3483.33uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953... [more]
BLAST of Moc08g00090 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g00090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E3092.9e-49100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica cha... [more]
A0A6J1HCT72.1e-3683.49protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita mos... [more]
A0A6J1K5244.4e-3483.33uncharacterized protein LOC111491756 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0L6056.0e-3176.47Radical_SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G667190... [more]
A0A5D3D8K92.4e-2773.53Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. maku... [more]
BLAST of Moc08g00090 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70350.12.3e-1451.38unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bac... [more]
AT1G55205.13.0e-0639.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G55205.25.6e-0538.95unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G20585.31.2e-0441.94nuclear fusion defective 6 [more]
AT2G20585.16.2e-0441.30nuclear fusion defective 6 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..50
NoneNo IPR availablePANTHERPTHR33156:SF2OS01G0738000 PROTEINcoord: 1..105
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g00090.1Moc08g00090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070475 rRNA base methylation
biological_process GO:0030488 tRNA methylation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008173 RNA methyltransferase activity