Moc07g24960 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g24960
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr7: 18573303 .. 18573614 (+)
RNA-Seq Expression	Moc07g24960
Synteny	Moc07g24960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACACTCAGAGAAGAACCTCCGGCGCCGGCTCTAGGCGGCAGCAACAGCCGAGCCGCCTCCAGCGGCGGGCTCCGGCGTCCCTCCAAATCAGCCGCTCCGATTGGAAAGTGGCCATCCCTCTGCTATCGCCGCTCGTTTCTCCCTCATCCCCCACAGAGATCCAAAATTCGCGGGAACCATCCACTTCTTCTCAAGGATCCGACCCGGAGAAGCCGCCGGTGCCGGTCACTAAGAAATGGCAGCACCCGGCGGCTCCGTTTCACTACGATTCCGGCCCTAGGGCTCCCCGATTCGTACCTGTGTAG

mRNA sequence

ATGGCCGACACTCAGAGAAGAACCTCCGGCGCCGGCTCTAGGCGGCAGCAACAGCCGAGCCGCCTCCAGCGGCGGGCTCCGGCGTCCCTCCAAATCAGCCGCTCCGATTGGAAAGTGGCCATCCCTCTGCTATCGCCGCTCGTTTCTCCCTCATCCCCCACAGAGATCCAAAATTCGCGGGAACCATCCACTTCTTCTCAAGGATCCGACCCGGAGAAGCCGCCGGTGCCGGTCACTAAGAAATGGCAGCACCCGGCGGCTCCGTTTCACTACGATTCCGGCCCTAGGGCTCCCCGATTCGTACCTGTGTAG

Coding sequence (CDS)

ATGGCCGACACTCAGAGAAGAACCTCCGGCGCCGGCTCTAGGCGGCAGCAACAGCCGAGCCGCCTCCAGCGGCGGGCTCCGGCGTCCCTCCAAATCAGCCGCTCCGATTGGAAAGTGGCCATCCCTCTGCTATCGCCGCTCGTTTCTCCCTCATCCCCCACAGAGATCCAAAATTCGCGGGAACCATCCACTTCTTCTCAAGGATCCGACCCGGAGAAGCCGCCGGTGCCGGTCACTAAGAAATGGCAGCACCCGGCGGCTCCGTTTCACTACGATTCCGGCCCTAGGGCTCCCCGATTCGTACCTGTGTAG

Protein sequence

MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNSREPSTSSQGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV

Homology

[Close]

BLAST of Moc07g24960 vs. NCBI nr
Match: XP_022138670.1 (uncharacterized protein At4g14450, chloroplastic-like [Momordica charantia])

HSP 1 Score: 200.7 bits (509), Expect = 6.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNSR 60
           MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNSR
Sbjct: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNSR 60

Query: 61  EPSTSSQGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV 104
           EPSTSSQGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV
Sbjct: 61  EPSTSSQGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV 103

[Close]

BLAST of Moc07g24960 vs. NCBI nr
Match: XP_038875425.1 (uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 86/113 (76.11%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN-- 60
           MAD+ RRTSGA  R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQN  
Sbjct: 1   MADSHRRTSGASGRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  --SREPSTSS------QGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV 104
             SRE S+SS      + S+PEKP  PV KKWQHPAAPFHYDSGPRAPRFVPV
Sbjct: 61  PDSREASSSSSQHHHHKESEPEKP--PVFKKWQHPAAPFHYDSGPRAPRFVPV 111

[Close]

BLAST of Moc07g24960 vs. NCBI nr
Match: XP_008460625.2 (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 6.5e-29
Identity = 81/127 (63.78%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN-- 60
           MAD+ RRTS   +R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQN  
Sbjct: 1   MADSHRRTSPTTTRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  --SREPSTSSQGS--------------------DPEKPPVPVTKKWQHPAAPFHYDSGPR 104
             SRE S++S  S                    +PE    PV KKWQHPAAPFHYDSGPR
Sbjct: 61  PDSREASSASSSSSSSSHHHHHHHQHHQHQHHKEPEAEKAPVFKKWQHPAAPFHYDSGPR 120

[Close]

BLAST of Moc07g24960 vs. NCBI nr
Match: XP_023000559.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-28
Identity = 85/118 (72.03%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN-- 60
           MA++QRR SGA +R+ QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN  
Sbjct: 1   MAESQRRASGAAARK-QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60

Query: 61  --SREPSTSS----------QGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPR-FVPV 104
             S   S+SS          + S+PEKP  PV KKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  ADSGSISSSSSHHHHHHHHHKESEPEKP--PVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

[Close]

BLAST of Moc07g24960 vs. NCBI nr
Match: XP_022930471.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 134.4 bits (337), Expect = 5.5e-28
Identity = 84/116 (72.41%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN-- 60
           MA++QRR SG  +R+ QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN  
Sbjct: 1   MAESQRRPSGTAARK-QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60

Query: 61  --SREPSTSS--------QGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPR-FVPV 104
             S   S+SS        + S+PEKP  PV KKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  ADSGSISSSSSHHHHHHHKESEPEKP--PVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

[Close]

BLAST of Moc07g24960 vs. ExPASy Swiss-Prot
Match: Q6NN02 (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.3e-11
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASL--QISRSDWKVAIPLLSPLVSPSSPTEIQN 60
           MA T +RTS + +  ++Q S+LQRRAP+ +    S S+W VAIPLLSPL +PS  +    
Sbjct: 19  MASTMQRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPL-APSLTSSFDQ 78

Query: 61  SREPSTSSQGSDP---EKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV 104
           S  P   ++   P   E    PV KKWQHPA+PF Y+     P F+ V
Sbjct: 79  SHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

[Close]

BLAST of Moc07g24960 vs. ExPASy TrEMBL
Match: A0A6J1CA35 (uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111009774 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.0e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNSR 60
           MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNSR
Sbjct: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNSR 60

Query: 61  EPSTSSQGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV 104
           EPSTSSQGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV
Sbjct: 61  EPSTSSQGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV 103

[Close]

BLAST of Moc07g24960 vs. ExPASy TrEMBL
Match: A0A1S3CDB1 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499403 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.1e-29
Identity = 81/127 (63.78%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN-- 60
           MAD+ RRTS   +R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQN  
Sbjct: 1   MADSHRRTSPTTTRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  --SREPSTSSQGS--------------------DPEKPPVPVTKKWQHPAAPFHYDSGPR 104
             SRE S++S  S                    +PE    PV KKWQHPAAPFHYDSGPR
Sbjct: 61  PDSREASSASSSSSSSSHHHHHHHQHHQHQHHKEPEAEKAPVFKKWQHPAAPFHYDSGPR 120

[Close]

BLAST of Moc07g24960 vs. ExPASy TrEMBL
Match: A0A6J1KKB8 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494801 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 85/118 (72.03%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN-- 60
           MA++QRR SGA +R+ QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN  
Sbjct: 1   MAESQRRASGAAARK-QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60

Query: 61  --SREPSTSS----------QGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPR-FVPV 104
             S   S+SS          + S+PEKP  PV KKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  ADSGSISSSSSHHHHHHHHHKESEPEKP--PVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

[Close]

BLAST of Moc07g24960 vs. ExPASy TrEMBL
Match: A0A6J1ER11 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111436912 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-28
Identity = 84/116 (72.41%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN-- 60
           MA++QRR SG  +R+ QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN  
Sbjct: 1   MAESQRRPSGTAARK-QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60

Query: 61  --SREPSTSS--------QGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPR-FVPV 104
             S   S+SS        + S+PEKP  PV KKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  ADSGSISSSSSHHHHHHHKESEPEKP--PVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

[Close]

BLAST of Moc07g24960 vs. ExPASy TrEMBL
Match: A0A6J1H320 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111459957 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.5e-23
Identity = 74/115 (64.35%), Postives = 82/115 (71.30%), Query Frame = 0


Query: 1   MADTQRRTS---GAGSRR---QQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPT 60
           MAD+ RRTS   GA  R    QQQP   + RAPASLQI+R DWKVAIPLL+PLVSPSSP 
Sbjct: 37  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 96

Query: 61  EIQ----NSREPSTSSQG---SDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVP 103
           EIQ    NS E S++S     S+PEKP  PV KKWQHPAAPF YDSGP  PRF+P
Sbjct: 97  EIQTWAPNSGEGSSNSSNHKESEPEKP--PVFKKWQHPAAPFQYDSGPMDPRFIP 149

[Close]

BLAST of Moc07g24960 vs. TAIR 10
Match: AT1G04330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-13
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1  MADTQRRTSGAGSRRQQQPSRLQRRAPASLQIS--RSDWKVAIPLLSPLVSPSSPTEIQN 60
          M+ T R  SG+G+R+    SRLQRRAP  L+I+   ++WKVAIPLLSP  SP        
Sbjct: 1  MSSTARNISGSGNRKS---SRLQRRAPPPLKINPCEANWKVAIPLLSPTESPPQKPPAVM 60

Query: 61 SREPSTSSQGSDPEKPPVPVTKKWQHPAAPFHYDSGP 96
           RE      G + EKP  PV KKWQHPAAPF+Y   P
Sbjct: 61 KRE--EQRWGKEAEKP--PVFKKWQHPAAPFYYQPAP 90

[Close]

BLAST of Moc07g24960 vs. TAIR 10
Match: AT4G14450.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-12
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASL--QISRSDWKVAIPLLSPLVSPSSPTEIQN 60
           MA T +RTS + +  ++Q S+LQRRAP+ +    S S+W VAIPLLSPL +PS  +    
Sbjct: 19  MASTMQRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPL-APSLTSSFDQ 78

Query: 61  SREPSTSSQGSDP---EKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV 104
           S  P   ++   P   E    PV KKWQHPA+PF Y+     P F+ V
Sbjct: 79  SHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

[Close]

BLAST of Moc07g24960 vs. TAIR 10
Match: AT3G23170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14450.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-10
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 1   MADTQRR---TSGAGSRRQQQPSRLQRRAPASLQI----SRSDWKVAIPLLSPL-VSP-S 60
           M+ T +R   +S +G  R +QPSRL +R PA   +    + ++W  AIPLLSPL +SP S
Sbjct: 1   MSTTMKRQGCSSDSGDLR-RQPSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPES 60

Query: 61  SPTEIQNSREPSTSSQGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVPV 104
           SP +    + P   +Q +       PV KKWQHPAAPF+Y+S    P FVPV
Sbjct: 61  SPVD----QPPVEKNQSTAVAVEKTPVFKKWQHPAAPFYYESSTFVPPFVPV 107

The following BLAST results are available for this feature:

BLAST of Moc07g24960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138670.1	6.2e-48	100.00	uncharacterized protein At4g14450, chloroplastic-like [Momordica charantia]	[more]
XP_038875425.1	1.3e-32	76.11	uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida]	[more]
XP_008460625.2	6.5e-29	63.78	PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo]	[more]
XP_023000559.1	2.5e-28	72.03	uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima]	[more]
XP_022930471.1	5.5e-28	72.41	uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Moc07g24960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NN02	8.3e-11	43.52	Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Moc07g24960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CA35	3.0e-48	100.00	uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=...	[more]
A0A1S3CDB1	3.1e-29	63.78	uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1KKB8	1.2e-28	72.03	uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1ER11	2.7e-28	72.41	uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1H320	7.5e-23	64.35	uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3...	[more]

BLAST of Moc07g24960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04330.1	1.8e-13	50.52	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G14450.1	5.9e-12	43.52	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT3G23170.1	4.2e-10	43.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..72
None	No IPR available	PANTHER	PTHR33912:SF2	PUTATIVE-RELATED	coord: 1..102
IPR040381	Uncharacterized protein At4g14450-like	PANTHER	PTHR33912	OS01G0939400 PROTEIN	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g24960.1	Moc07g24960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular anatomical structure