Moc07g24780 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g24780
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionrepetitive proline-rich cell wall protein 3-like
Locationchr7: 18469159 .. 18471452 (+)
RNA-Seq ExpressionMoc07g24780
SyntenyMoc07g24780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCTCAAATACTTCCTTCTGCTTCTTCTCGGAGTGGTGCTTCTCACCACCTCCCAAGCTCTGAGAATTACGGCGGAGTCCAGCCAAGAAGTGATTCCAGTCACTGATCAGAAGCTTCCCTCTACCACCGCCACCACCACTGCCACCGAGCCCGAGTCGGAGGACGAGGAGTCCAAGTACTATAAGAAGAAACCTCGCTACAAGTACAAGCCTCCCTATAAGAGGTACCCACCCTACAAAAAACCACCCTACAAAAAACCACCTTACCACTACAAGCCACCGTCCTCCAACTAAATGCCGTGGGCCCGAACTTATGACCACGAACGTGACATGTTTATTGGATAAATAAGTACTGTAGCAATCTGCGGTGCCCAAGTTTTAAGTGATATTAAAACGTTTATGAAGTTTTTAATTTCTGTAATCTAAATTTCGCACCTGTGATGTCTTATCTATGTATCATGCTTGTGTAATATAAATTTGAAAGAATATAATATTTAGTCGTTTGCTTTAATTTTTTTGAATTCTTAATCTTTGAAACTAGAGAAGATAAATTTAGAATGAGATATTTTCATTTCTAAATTACATAAATTAATAATTAAAAGTCTCAATTGGATTTTTTTTCCCTTGAGTTCAACCACTATAATAGCGGGGAATAAACTTTCGATGTCAAATATGATAACATGCATTACATATTCTATGTTAAATAATTTGAGATGTACTTAAAAGTGGTTTTAATTAATTTTTTTAGAGTATTGTTTTCACAAAGGTTGTGATTAAAAATCATAAATTGATATTTTAAAAAAAAAAAATCATACATTGTTTTCACACAGGTTATTTGTGTACATATTTTTAACTTTTCATCTTCCATATCTCTTTGTTTTTGTTTTTAGGAATAATTGAAGTTAAAAAGAAAAAAGTGGTCTGAAAGTTGCGTTATTTGTTTCCTATCCTATTTTAAGACATTTATTAATTAAAAACATAGTATATAATTTATTTTCTTATCTAGTCGCCATATTCCATTTGTATATATTTTTATTTATAATATCCAATAGAAGTGTCAAATTGAATATAGTTAGCTAAGTTAAGACACTTAAATTTCTTTCCAAGTCAAAGTTTCGAATTTCCGATTTACTCTTTATTGTGCTAAAACTAAGTTAAATTTTAACTATTTAGATTAATTATATCTACCATATTAATTCCAAAGGTGGAAAAAATGGATAATGCTGATCTAAGAAATATGAGGAGAAAAGTAATATGATTTTTCTAAAAAGGAAAAGAAATATATAATCCAAATAAATTCTTAATTAAGTTGCTTAAGAGTCATGTGTCATCAATGTCAAGGATAACGATGTTTTTGGTTTCACTAAAAAGACCTCTACCAATGAAGATAATACTATGGATCATGCTCTTCCCTAATAATGTACAACTTTGTTCGCATTCAACTTACAAATCCAATACTCAATAATTGTTTTTTCGCAATAATTATAAGATGCTATTAGTGGCTTTTCTAAACTATTTTTTATTTAGAAAAATGAAAAAGAAAATCATCCAAGACGTATTTTAATTCAATTATCAGTCAAAATATCGGTAATCTTCTTAAATTCCACACTTTCTTCCTTCTTTCATTTTAGTCTTTATATTTTTAATCTTTCATATTGGTTCATAATTCTTATTAAAGTTTTATTTTAATCCTTTTTATTAAATATTAATATTTTATTATACAAAAAACCTTAAATGACTTTTTCCGAAGATGAAATTTAGATCTCACACATGCATGTTGGTTGAAAATACAAATTTACCTAATAATTATTAGATTTCTACCATGATGTACACAACTTTTAAAGAAGATTACCCTTATTTTAACTAATAATTAAATTTCATTTAAATTGGTACGATAAGAAATTTTTACTCATCTAAAATATGATTTGTGAATAATAAAAAATAAATCAGAATAATGTAATGAGGAGATTCGAATATTATTGTATTGAATAATTCTGAGAATTGAGATCTGAAATTTTCAATAATTTTCAATCTAAGTGATATATCAAACTATCACATCATATAATTAAGGGAATGGTCGTCCAAAATGGACCTCTTTTGACTTTTATCATATTTTAAACTTATTGTTCAAAATAAATAAATAAATACTCAACTTCAGTCATGTATGACGTTTCCATGCAAAATAATTAATCAACGTGCTCTCCTATCTTAATTCTCCCCGCAAAATTATACAACTTACTACGATTCATAACCTTTGATTACTCTTCAGGTTACTTGATCGTGGCAATTAA

mRNA sequence

ATGTTTCTCAAATACTTCCTTCTGCTTCTTCTCGGAGTGGTGCTTCTCACCACCTCCCAAGCTCTGAGAATTACGGCGGAGTCCAGCCAAGAAGTGATTCCAGTCACTGATCAGAAGCTTCCCTCTACCACCGCCACCACCACTGCCACCGAGCCCGAGTCGGAGGACGAGGAGTCCAAGTACTATAAGAAGAAACCTCGCTACAAGTACAAGCCTCCCTATAAGAGGTTACTTGATCGTGGCAATTAA

Coding sequence (CDS)

ATGTTTCTCAAATACTTCCTTCTGCTTCTTCTCGGAGTGGTGCTTCTCACCACCTCCCAAGCTCTGAGAATTACGGCGGAGTCCAGCCAAGAAGTGATTCCAGTCACTGATCAGAAGCTTCCCTCTACCACCGCCACCACCACTGCCACCGAGCCCGAGTCGGAGGACGAGGAGTCCAAGTACTATAAGAAGAAACCTCGCTACAAGTACAAGCCTCCCTATAAGAGGTTACTTGATCGTGGCAATTAA

Protein sequence

MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTDQKLPSTTATTTATEPESEDEESKYYKKKPRYKYKPPYKRLLDRGN
Homology
BLAST of Moc07g24780 vs. NCBI nr
Match: XP_023513909.1 (repetitive proline-rich cell wall protein 3-like [Cucurbita pepo subsp. pepo] >KAG6593838.1 hypothetical protein SDJN03_13314, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026170.1 hypothetical protein SDJN02_12669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.3 bits (207), Expect = 5.2e-13
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 0

Query: 1  MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTDQKLPSTTATTTATEPESEDEESK 60
          MF+KYFLLLLL VVLLTT+QAL+  ++S+ EVIPV++QKLPSTTAT   TEP SE EESK
Sbjct: 1  MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATD--TEPASEHEESK 60

Query: 61 YYKKKPRYKYKPPYKR 77
          +Y+K+P YK  PPYKR
Sbjct: 61 FYRKRP-YKKYPPYKR 73

BLAST of Moc07g24780 vs. NCBI nr
Match: XP_022930415.1 (uncharacterized protein LOC111436870 [Cucurbita moschata])

HSP 1 Score: 80.9 bits (198), Expect = 5.7e-12
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 0

Query: 1  MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTDQKLPSTTATTTATEPESEDEESK 60
          MF+KYFLLLLL VVLLTT+QAL+  ++S+ EVIPV++QKLPSTTAT   TEP SE EESK
Sbjct: 1  MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATD--TEPASEHEESK 60

Query: 61 YYKKKPRYKYKPPYKR 77
          +Y+K+  YK  PPYKR
Sbjct: 61 FYRKR-LYKKYPPYKR 73

BLAST of Moc07g24780 vs. NCBI nr
Match: WP_219729224.1 (hypothetical protein, partial [Pectobacterium odoriferum])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 0

Query: 1  MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTDQKLPSTTATTTATEPESEDEESK 60
          MFLKYFLLLLL VVLLTT+QAL+  ++S+QEVIP+TD++LP+TT T T  + ES+  +  
Sbjct: 7  MFLKYFLLLLLAVVLLTTTQALKHPSDSNQEVIPLTDERLPTTTTTNTDPDEESKFYKKP 66

Query: 61 YYK----KKPRYKYKPPYKR 77
          YYK    K+P YK  PPYK+
Sbjct: 67 YYKRPYYKRPPYKKYPPYKK 86

BLAST of Moc07g24780 vs. NCBI nr
Match: POE15980.1 (hypothetical protein BV923_23575 [Pectobacterium odoriferum])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 0

Query: 1  MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTDQKLPSTTATTTATEPESEDEESK 60
          MFLKYFLLLLL VVLLTT+QAL+  ++S+QEVIP+TD++LP+TT T T  + ES+  +  
Sbjct: 1  MFLKYFLLLLLAVVLLTTTQALKHPSDSNQEVIPLTDERLPTTTTTNTDPDEESKFYKKP 60

Query: 61 YYK----KKPRYKYKPPYKR 77
          YYK    K+P YK  PPYK+
Sbjct: 61 YYKRPYYKRPPYKKYPPYKK 80

BLAST of Moc07g24780 vs. NCBI nr
Match: XP_004147144.2 (repetitive proline-rich cell wall protein 3 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1  MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTD---QKLPSTTATTTATEPESEDE 60
          MFLKYFLLLLL VVLLTT+QAL+  + S+QEVIP TD    KLP     TT T+P   +E
Sbjct: 15 MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLP-----TTITDP---NE 74

Query: 61 ESKYYKKKPRYK--YK-PPYKR 77
          ESK+Y++   YK  YK PPYKR
Sbjct: 75 ESKFYRRPSPYKKPYKRPPYKR 88

BLAST of Moc07g24780 vs. ExPASy TrEMBL
Match: A0A6J1EWV3 (uncharacterized protein LOC111436870 OS=Cucurbita moschata OX=3662 GN=LOC111436870 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 0

Query: 1  MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTDQKLPSTTATTTATEPESEDEESK 60
          MF+KYFLLLLL VVLLTT+QAL+  ++S+ EVIPV++QKLPSTTAT   TEP SE EESK
Sbjct: 1  MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATD--TEPASEHEESK 60

Query: 61 YYKKKPRYKYKPPYKR 77
          +Y+K+  YK  PPYKR
Sbjct: 61 FYRKR-LYKKYPPYKR 73

BLAST of Moc07g24780 vs. ExPASy TrEMBL
Match: A0A0A0LI79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176190 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1  MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTD---QKLPSTTATTTATEPESEDE 60
          MFLKYFLLLLL VVLLTT+QAL+  + S+QEVIP TD    KLP     TT T+P   +E
Sbjct: 15 MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLP-----TTITDP---NE 74

Query: 61 ESKYYKKKPRYK--YK-PPYKR 77
          ESK+Y++   YK  YK PPYKR
Sbjct: 75 ESKFYRRPSPYKKPYKRPPYKR 88

BLAST of Moc07g24780 vs. ExPASy TrEMBL
Match: A0A5A7VEY7 (Repetitive proline-rich cell wall protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00050 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.3e-05
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 1  MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTDQKLPSTTATTTATEPESEDEESK 60
          MFLKYFLLLLL  VLL+T+QAL+  + S QEVIP TD  +   T  TT  +P   +EESK
Sbjct: 1  MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTD--VTQGTLPTTIADP---NEESK 60

Query: 61 YYK---------KKPRYKYKPPYKR 77
          +Y+         K+P YK  PPYK+
Sbjct: 61 FYRRPFPYKKPYKRPPYKKYPPYKK 80

BLAST of Moc07g24780 vs. ExPASy TrEMBL
Match: A0A1S3CE34 (repetitive proline-rich cell wall protein 3-like OS=Cucumis melo OX=3656 GN=LOC103499417 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.3e-05
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 1  MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTDQKLPSTTATTTATEPESEDEESK 60
          MFLKYFLLLLL  VLL+T+QAL+  + S QEVIP TD  +   T  TT  +P   +EESK
Sbjct: 1  MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTD--VTQGTLPTTIADP---NEESK 60

Query: 61 YYK---------KKPRYKYKPPYKR 77
          +Y+         K+P YK  PPYK+
Sbjct: 61 FYRRPFPYKKPYKRPPYKKYPPYKK 80

BLAST of Moc07g24780 vs. ExPASy TrEMBL
Match: A0A0A0LNP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176690 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.1e-04
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 0

Query: 1   MFLKYFLLLLLGVVLLTTSQALRITAESSQEVIPVTDQKLPSTTATTTATEPESEDEESK 60
           MF KYFLLLLL VVLLTT+QAL+    S+QE IP TD  L      TT T+P   +EESK
Sbjct: 15  MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTD--LTHGKLPTTITDP---NEESK 74

Query: 61  Y---------------YKKKPRYKYKPPYKR 77
           +               YKK P YK +PPYK+
Sbjct: 75  FFRRPSPYKKPYKRPPYKKYPPYKKRPPYKK 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023513909.15.2e-1369.74repetitive proline-rich cell wall protein 3-like [Cucurbita pepo subsp. pepo] >K... [more]
XP_022930415.15.7e-1268.42uncharacterized protein LOC111436870 [Cucurbita moschata][more]
WP_219729224.11.8e-1058.75hypothetical protein, partial [Pectobacterium odoriferum][more]
POE15980.11.8e-1058.75hypothetical protein BV923_23575 [Pectobacterium odoriferum][more]
XP_004147144.22.8e-0659.76repetitive proline-rich cell wall protein 3 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EWV32.8e-1268.42uncharacterized protein LOC111436870 OS=Cucurbita moschata OX=3662 GN=LOC1114368... [more]
A0A0A0LI791.3e-0659.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176190 PE=4 SV=1[more]
A0A5A7VEY74.3e-0550.59Repetitive proline-rich cell wall protein 3-like OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3CE344.3e-0550.59repetitive proline-rich cell wall protein 3-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A0A0LNP28.1e-0449.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176690 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g24780.1Moc07g24780.1mRNA