Moc07g24600 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g24600
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	U2 snRNP auxiliary factor large subunit
Location	chr7: 18340580 .. 18341128 (+)
RNA-Seq Expression	Moc07g24600
Synteny	Moc07g24600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCCGTTGAGGAAGCAAGTAATGCAATGGCCTTGGACGGGATCATCTTTGAGGTACTTAGTTTTGTTGTCAACCATTTCGTGTCCATATTTCATGTTTGAACAAAAACTATATAGGAAAATATTTCTCTAATCTGTTACTTTTTTTTTTTTTTTTTGTTTAATTAGGGAGTGCCTGTTAAGGTGAGAAGACCTAGGGATCACAATCCTTCACTTGCAGCAACACTTGGTCGGAGCCAATTGAATCCAAATCTGAACCTAACTGCTGTCGGCCTAACGCCAAAATTTGCCAAGGGGCCAGATTGCATCTTTGTGGGTGGACTTCCTTGTTACTTCACAGAAGCGCAGGTCAGAGAGTTGCTGGAGACTTTTGGGCCCCTGCGAGGTCTTGATTTGGTGAAAGATAGAGAGACTGGAAATTCGAAAGGCTACGCGTTTTGTGTTTACCAAGATCTTTCAGTCACAGACATAGTCTGTTTGGCCCTCAACGACATTAAAATGGGCGAGAAGACACTCACGGTTCGGCGTTTTATGTCATGTATTTAG

mRNA sequence

ATGAGATCCGTTGAGGAAGCAAGTAATGCAATGGCCTTGGACGGGATCATCTTTGAGGGAGTGCCTGTTAAGGTGAGAAGACCTAGGGATCACAATCCTTCACTTGCAGCAACACTTGGTCGGAGCCAATTGAATCCAAATCTGAACCTAACTGCTGTCGGCCTAACGCCAAAATTTGCCAAGGGGCCAGATTGCATCTTTGTGGGTGGACTTCCTTGTTACTTCACAGAAGCGCAGGTCAGAGAGTTGCTGGAGACTTTTGGGCCCCTGCGAGGTCTTGATTTGGTGAAAGATAGAGAGACTGGAAATTCGAAAGGCTACGCGTTTTGTGTTTACCAAGATCTTTCAGTCACAGACATAGTCTGTTTGGCCCTCAACGACATTAAAATGGGCGAGAAGACACTCACGGTTCGGCGTTTTATGTCATGTATTTAG

Coding sequence (CDS)

ATGAGATCCGTTGAGGAAGCAAGTAATGCAATGGCCTTGGACGGGATCATCTTTGAGGGAGTGCCTGTTAAGGTGAGAAGACCTAGGGATCACAATCCTTCACTTGCAGCAACACTTGGTCGGAGCCAATTGAATCCAAATCTGAACCTAACTGCTGTCGGCCTAACGCCAAAATTTGCCAAGGGGCCAGATTGCATCTTTGTGGGTGGACTTCCTTGTTACTTCACAGAAGCGCAGGTCAGAGAGTTGCTGGAGACTTTTGGGCCCCTGCGAGGTCTTGATTTGGTGAAAGATAGAGAGACTGGAAATTCGAAAGGCTACGCGTTTTGTGTTTACCAAGATCTTTCAGTCACAGACATAGTCTGTTTGGCCCTCAACGACATTAAAATGGGCGAGAAGACACTCACGGTTCGGCGTTTTATGTCATGTATTTAG

Protein sequence

MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFAKGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSVTDIVCLALNDIKMGEKTLTVRRFMSCI

Homology

[Close]

BLAST of Moc07g24600 vs. NCBI nr
Match: XP_022138691.1 (splicing factor U2af large subunit B-like isoform X1 [Momordica charantia])

HSP 1 Score: 297.4 bits (760), Expect = 6.9e-77
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA
Sbjct: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60

Query: 61  KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSVTDI 120
           KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSVTDI
Sbjct: 61  KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSVTDI 120

Query: 121 VCLALNDIKMGEKTLTVRRFMSCI 145
           VCLALNDIKMGEKTLTVRRFMSCI
Sbjct: 121 VCLALNDIKMGEKTLTVRRFMSCI 144

[Close]

BLAST of Moc07g24600 vs. NCBI nr
Match: KAF3439056.1 (hypothetical protein FNV43_RR17331 [Rhamnella rubrinervis])

HSP 1 Score: 241.5 bits (615), Expect = 4.5e-60
Identity = 121/142 (85.21%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEG PVKVRRP D+NPSLAATLG SQ NPNLNLTAVGLTP  A
Sbjct: 302 MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLTAVGLTPGSA 361

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQ++ELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 362 GGLEGPDRIFVGGLPYYFTEAQIKELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 421

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 422 TDIACAALNGIKMGDKTLTVRR 443

[Close]

BLAST of Moc07g24600 vs. NCBI nr
Match: XP_038884486.1 (splicing factor U2af large subunit B isoform X11 [Benincasa hispida])

HSP 1 Score: 241.1 bits (614), Expect = 5.8e-60
Identity = 122/142 (85.92%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEG PVKVRRP D+NPSLAATLG SQ NPNLNL AVGLTP  A
Sbjct: 192 MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 251

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQVRELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 252 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 311

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 312 TDIACAALNGIKMGDKTLTVRR 333

[Close]

BLAST of Moc07g24600 vs. NCBI nr
Match: XP_022960287.1 (splicing factor U2af large subunit A-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 5.8e-60
Identity = 122/142 (85.92%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEG PVKVRRP D+NPSLAATLG SQ NPNLNL AVGLTP  A
Sbjct: 307 MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 366

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQVRELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 367 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 426

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 427 TDIACAALNGIKMGDKTLTVRR 448

[Close]

BLAST of Moc07g24600 vs. NCBI nr
Match: XP_022960288.1 (splicing factor U2af large subunit A-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 5.8e-60
Identity = 122/142 (85.92%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEG PVKVRRP D+NPSLAATLG SQ NPNLNL AVGLTP  A
Sbjct: 302 MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 361

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQVRELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 362 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 421

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 422 TDIACAALNGIKMGDKTLTVRR 443

[Close]

BLAST of Moc07g24600 vs. ExPASy Swiss-Prot
Match: Q2R0Q1 (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-61
Identity = 119/142 (83.80%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGI+FEG PVKVRRP D+NPSLAA LG SQ NPNLNL AVGLTP  A
Sbjct: 292 MRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSA 351

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQVRELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDL+V
Sbjct: 352 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNV 411

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 412 TDIACAALNGIKMGDKTLTVRR 433

[Close]

BLAST of Moc07g24600 vs. ExPASy Swiss-Prot
Match: Q9ZR40 (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-61
Identity = 118/142 (83.10%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEG P KVRRP D+NPSLAATLG SQ NPNLNL AVGL+P  A
Sbjct: 293 MRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSA 352

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQ+RELLE+FGPLRG DLVKDRETGNSKGYAFCVYQD+SV
Sbjct: 353 GGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSV 412

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 413 TDIACAALNGIKMGDKTLTVRR 434

[Close]

BLAST of Moc07g24600 vs. ExPASy Swiss-Prot
Match: Q2QZL4 (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF65B PE=3 SV=2)

HSP 1 Score: 235.3 bits (599), Expect = 4.2e-61
Identity = 118/142 (83.10%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGI+FEG PVKVRRP D+NPSLAA LG SQ +PNLNL AVGLTP  A
Sbjct: 268 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSA 327

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQVRELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDL+V
Sbjct: 328 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNV 387

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 388 TDIACAALNGIKMGDKTLTVRR 409

[Close]

BLAST of Moc07g24600 vs. ExPASy Swiss-Prot
Match: Q2QKB4 (Splicing factor U2af large subunit B OS=Triticum aestivum OX=4565 GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.5e-60
Identity = 117/142 (82.39%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGI+FEG PVKVRRP D+NPSLAA LG SQ + NLNL AVGLTP  A
Sbjct: 261 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSA 320

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQVRELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDL+V
Sbjct: 321 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNV 380

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 381 TDIACAALNGIKMGDKTLTVRR 402

[Close]

BLAST of Moc07g24600 vs. ExPASy Swiss-Prot
Match: O23212 (Splicing factor U2af large subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF65A PE=1 SV=2)

HSP 1 Score: 229.2 bits (583), Expect = 3.0e-59
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAM+LDGIIFEG PVKVRRP D+NPSLAATLG SQ +P+LNL AVGLTP  +
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGAS 352

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTE+QVRELLE+FG L+G DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 353 GGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSV 412

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 413 TDIACAALNGIKMGDKTLTVRR 434

[Close]

BLAST of Moc07g24600 vs. ExPASy TrEMBL
Match: A0A6J1CAF6 (splicing factor U2af large subunit B-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009789 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.3e-77
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA
Sbjct: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60

Query: 61  KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSVTDI 120
           KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSVTDI
Sbjct: 61  KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSVTDI 120

Query: 121 VCLALNDIKMGEKTLTVRRFMSCI 145
           VCLALNDIKMGEKTLTVRRFMSCI
Sbjct: 121 VCLALNDIKMGEKTLTVRRFMSCI 144

[Close]

BLAST of Moc07g24600 vs. ExPASy TrEMBL
Match: A0A6J1KRW5 (U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111498112 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.8e-60
Identity = 122/142 (85.92%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEG PVKVRRP D+NPSLAATLG SQ NPNLNL AVGLTP  A
Sbjct: 129 MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 188

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQVRELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 189 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 248

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 249 TDIACAALNGIKMGDKTLTVRR 270

[Close]

BLAST of Moc07g24600 vs. ExPASy TrEMBL
Match: A0A1S4DVW4 (U2 snRNP auxiliary factor large subunit OS=Cucumis melo OX=3656 GN=LOC103488581 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.8e-60
Identity = 122/142 (85.92%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEG PVKVRRP D+NPSLAATLG SQ NPNLNL AVGLTP  A
Sbjct: 145 MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 204

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQVRELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 205 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 264

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 265 TDIACAALNGIKMGDKTLTVRR 286

[Close]

BLAST of Moc07g24600 vs. ExPASy TrEMBL
Match: A0A2I0J2J5 (U2 snRNP auxiliary factor large subunit OS=Punica granatum OX=22663 GN=LOC116210050 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.8e-60
Identity = 122/142 (85.92%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEG PVKVRRP D+NPSLAATLG SQ NPNLNL AVGLTP  A
Sbjct: 87  MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 146

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQVRELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 147 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 206

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 207 TDIACAALNGIKMGDKTLTVRR 228

[Close]

BLAST of Moc07g24600 vs. ExPASy TrEMBL
Match: A0A218WNV1 (U2 snRNP auxiliary factor large subunit OS=Punica granatum OX=22663 GN=LOC116210050 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.8e-60
Identity = 122/142 (85.92%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGIIFEG PVKVRRP D+NPSLAATLG SQ NPNLNL AVGLTP  A
Sbjct: 306 MRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 365

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTEAQVRELLE+FGPLRG DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 366 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSV 425

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 426 TDIACAALNGIKMGDKTLTVRR 447

[Close]

BLAST of Moc07g24600 vs. TAIR 10
Match: AT4G36690.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 229.2 bits (583), Expect = 2.1e-60
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAM+LDGIIFEG PVKVRRP D+NPSLAATLG SQ +P+LNL AVGLTP  +
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGAS 352

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTE+QVRELLE+FG L+G DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 353 GGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSV 412

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 413 TDIACAALNGIKMGDKTLTVRR 434

[Close]

BLAST of Moc07g24600 vs. TAIR 10
Match: AT4G36690.3 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 229.2 bits (583), Expect = 2.1e-60
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAM+LDGIIFEG PVKVRRP D+NPSLAATLG SQ +P+LNL AVGLTP  +
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGAS 352

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTE+QVRELLE+FG L+G DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 353 GGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSV 412

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 413 TDIACAALNGIKMGDKTLTVRR 434

[Close]

BLAST of Moc07g24600 vs. TAIR 10
Match: AT4G36690.2 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 229.2 bits (583), Expect = 2.1e-60
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAM+LDGIIFEG PVKVRRP D+NPSLAATLG SQ +P+LNL AVGLTP  +
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGAS 352

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTE+QVRELLE+FG L+G DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 353 GGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSV 412

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 413 TDIACAALNGIKMGDKTLTVRR 434

[Close]

BLAST of Moc07g24600 vs. TAIR 10
Match: AT4G36690.4 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 229.2 bits (583), Expect = 2.1e-60
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAM+LDGIIFEG PVKVRRP D+NPSLAATLG SQ +P+LNL AVGLTP  +
Sbjct: 271 MRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGAS 330

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTE+QVRELLE+FG L+G DLVKDRETGNSKGYAFCVYQDLSV
Sbjct: 331 GGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSV 390

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 391 TDIACAALNGIKMGDKTLTVRR 412

[Close]

BLAST of Moc07g24600 vs. TAIR 10
Match: AT1G60900.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-59
Identity = 115/142 (80.99%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 1   MRSVEEASNAMALDGIIFEGVPVKVRRPRDHNPSLAATLGRSQLNPNLNLTAVGLTPKFA 60
           MRSVEEASNAMALDGII EGVPVKVRRP D+NPSLAATLG SQ NPNLNL AVGL+    
Sbjct: 309 MRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGST 368

Query: 61  ---KGPDCIFVGGLPCYFTEAQVRELLETFGPLRGLDLVKDRETGNSKGYAFCVYQDLSV 120
              +GPD IFVGGLP YFTE Q+RELLE+FGPLRG +LVKDRETGNSKGYAFCVYQD SV
Sbjct: 369 GGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSV 428

Query: 121 TDIVCLALNDIKMGEKTLTVRR 140
           TDI C ALN IKMG+KTLTVRR
Sbjct: 429 TDIACAALNGIKMGDKTLTVRR 450

The following BLAST results are available for this feature:

BLAST of Moc07g24600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138691.1	6.9e-77	100.00	splicing factor U2af large subunit B-like isoform X1 [Momordica charantia]	[more]
KAF3439056.1	4.5e-60	85.21	hypothetical protein FNV43_RR17331 [Rhamnella rubrinervis]	[more]
XP_038884486.1	5.8e-60	85.92	splicing factor U2af large subunit B isoform X11 [Benincasa hispida]	[more]
XP_022960287.1	5.8e-60	85.92	splicing factor U2af large subunit A-like isoform X3 [Cucurbita moschata]	[more]
XP_022960288.1	5.8e-60	85.92	splicing factor U2af large subunit A-like isoform X4 [Cucurbita moschata]	[more]

BLAST of Moc07g24600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2R0Q1	1.4e-61	83.80	Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9ZR40	2.5e-61	83.10	Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2A...	[more]
Q2QZL4	4.2e-61	83.10	Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q2QKB4	3.5e-60	82.39	Splicing factor U2af large subunit B OS=Triticum aestivum OX=4565 GN=U2AF65B PE=...	[more]
O23212	3.0e-59	80.99	Splicing factor U2af large subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF65A ...	[more]

BLAST of Moc07g24600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAF6	3.3e-77	100.00	splicing factor U2af large subunit B-like isoform X1 OS=Momordica charantia OX=3...	[more]
A0A6J1KRW5	2.8e-60	85.92	U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111498...	[more]
A0A1S4DVW4	2.8e-60	85.92	U2 snRNP auxiliary factor large subunit OS=Cucumis melo OX=3656 GN=LOC103488581 ...	[more]
A0A2I0J2J5	2.8e-60	85.92	U2 snRNP auxiliary factor large subunit OS=Punica granatum OX=22663 GN=LOC116210...	[more]
A0A218WNV1	2.8e-60	85.92	U2 snRNP auxiliary factor large subunit OS=Punica granatum OX=22663 GN=LOC116210...	[more]

BLAST of Moc07g24600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36690.1	2.1e-60	80.99	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.3	2.1e-60	80.99	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.2	2.1e-60	80.99	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.4	2.1e-60	80.99	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT1G60900.1	1.1e-59	80.99	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 65..138 e-value: 1.8E-14 score: 64.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 66..135 e-value: 9.9E-14 score: 50.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 64..142 score: 12.662667
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..137 e-value: 2.8E-31 score: 110.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 45..115 e-value: 2.8E-31 score: 110.7
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 1..139
None	No IPR available	PANTHER	PTHR23139:SF114	SPLICING FACTOR U2AF LARGE SUBUNIT A	coord: 1..139
None	No IPR available	CDD	cd12231	RRM2_U2AF65	coord: 66..139 e-value: 6.20869E-41 score: 129.658
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 60..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g24600.1	Moc07g24600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding