Moc07g24480 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g24480
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionEmbryo sac development arrest protein
Locationchr7: 18252703 .. 18253086 (+)
RNA-Seq ExpressionMoc07g24480
SyntenyMoc07g24480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTTCACTCCCGAACCATGTTGCCTCCTGGGGCGTCAAGGAAGCGAAAAGAGGTTGAGTCGTTTATGAAGCCGTTGGCTCCGAAAGCTGGCGGCGGCGGCGGCGAAGGGGACTCAGTCTCGTCGAATCGGCTTCTAGCCGGCTACTTGGCTCACGAGTTTCTCAGCAAAGGCACTCTATTTGGGGAGAAGTACGAGCCGGCTCGAAGGGAAGCCATTTCCCTGGCTGGCGAGTGTAAGAGGACGAAGCCGGAAGCCGCGCCGAGCGTCAAAAATGAAAATCAGAGTTATGCTGAGGTGGCAAGCATCTTGAAGATGGATGGGGCCCACCTGCCTGGAATTGTTAACCCGGCCCAGCTGGCTCGGTGGATCAAAATGTAG

mRNA sequence

ATGAGTGTTCACTCCCGAACCATGTTGCCTCCTGGGGCGTCAAGGAAGCGAAAAGAGGTTGAGTCGTTTATGAAGCCGTTGGCTCCGAAAGCTGGCGGCGGCGGCGGCGAAGGGGACTCAGTCTCGTCGAATCGGCTTCTAGCCGGCTACTTGGCTCACGAGTTTCTCAGCAAAGGCACTCTATTTGGGGAGAAGTACGAGCCGGCTCGAAGGGAAGCCATTTCCCTGGCTGGCGAGTGTAAGAGGACGAAGCCGGAAGCCGCGCCGAGCGTCAAAAATGAAAATCAGAGTTATGCTGAGGTGGCAAGCATCTTGAAGATGGATGGGGCCCACCTGCCTGGAATTGTTAACCCGGCCCAGCTGGCTCGGTGGATCAAAATGTAG

Coding sequence (CDS)

ATGAGTGTTCACTCCCGAACCATGTTGCCTCCTGGGGCGTCAAGGAAGCGAAAAGAGGTTGAGTCGTTTATGAAGCCGTTGGCTCCGAAAGCTGGCGGCGGCGGCGGCGAAGGGGACTCAGTCTCGTCGAATCGGCTTCTAGCCGGCTACTTGGCTCACGAGTTTCTCAGCAAAGGCACTCTATTTGGGGAGAAGTACGAGCCGGCTCGAAGGGAAGCCATTTCCCTGGCTGGCGAGTGTAAGAGGACGAAGCCGGAAGCCGCGCCGAGCGTCAAAAATGAAAATCAGAGTTATGCTGAGGTGGCAAGCATCTTGAAGATGGATGGGGCCCACCTGCCTGGAATTGTTAACCCGGCCCAGCTGGCTCGGTGGATCAAAATGTAG

Protein sequence

MSVHSRTMLPPGASRKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLSKGTLFGEKYEPARREAISLAGECKRTKPEAAPSVKNENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM
Homology
BLAST of Moc07g24480 vs. NCBI nr
Match: XP_023547636.1 (uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo] >XP_023547637.1 uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 105/138 (76.09%), Postives = 110/138 (79.71%), Query Frame = 0

Query: 1   MSVHSR---TMLPPGASRKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLS 60
           MSVHSR   TMLPP ASRKRKEVE F+K   PKA G     DSVSSN+LLAGYLAHEFLS
Sbjct: 1   MSVHSRTITTMLPPRASRKRKEVEPFVK---PKATG----VDSVSSNQLLAGYLAHEFLS 60

Query: 61  KGTLFGEKYEPARREAISLA----GECKRTKPE----AAPSVKNENQSYAEVASILKMDG 120
           KGTLFGEKYEPAR EA+ +      ECKRTKPE    AAPSV+ EN SYAEVASILKMDG
Sbjct: 61  KGTLFGEKYEPARSEAVGMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDG 120

Query: 121 AHLPGIVNPAQLARWIKM 128
           AHLPGIVNPAQLARWIKM
Sbjct: 121 AHLPGIVNPAQLARWIKM 131

BLAST of Moc07g24480 vs. NCBI nr
Match: XP_022964143.1 (uncharacterized protein LOC111464257 [Cucurbita moschata])

HSP 1 Score: 181.4 bits (459), Expect = 4.8e-42
Identity = 102/135 (75.56%), Postives = 109/135 (80.74%), Query Frame = 0

Query: 2   SVHSR---TMLPPGASRKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLSK 61
           SVHSR   TMLPPGASRKRKEVE+F+KP A  A       DSV SNRLLAGYLAHEFLSK
Sbjct: 3   SVHSRTTTTMLPPGASRKRKEVEAFVKPKAVGA-------DSVVSNRLLAGYLAHEFLSK 62

Query: 62  GTLFGEKYEPARREAISLA----GECKRTKPE--AAPSVKNENQSYAEVASILKMDGAHL 121
           GTLFGEKYEPAR EA+ +      E K+TKPE  AAPSV+ ENQSYAEVASILKM+GAHL
Sbjct: 63  GTLFGEKYEPARSEAVGMTCSRPAEYKKTKPEAAAAPSVEKENQSYAEVASILKMEGAHL 122

Query: 122 PGIVNPAQLARWIKM 128
           PGIVNPAQLARWIKM
Sbjct: 123 PGIVNPAQLARWIKM 130

BLAST of Moc07g24480 vs. NCBI nr
Match: KAG6593829.1 (hypothetical protein SDJN03_13305, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 4.8e-42
Identity = 102/135 (75.56%), Postives = 109/135 (80.74%), Query Frame = 0

Query: 2   SVHSR---TMLPPGASRKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLSK 61
           SVHSR   TMLPPGASRKRKEVE+F+KP A  A       DSV SNRLLAGYLAHEFLSK
Sbjct: 3   SVHSRTTTTMLPPGASRKRKEVETFVKPKAVGA-------DSVVSNRLLAGYLAHEFLSK 62

Query: 62  GTLFGEKYEPARREAISLA----GECKRTKPE--AAPSVKNENQSYAEVASILKMDGAHL 121
           GTLFGEKYEPAR EA+ +      E K+TKPE  AAPSV+ ENQSYAEVASILKM+GAHL
Sbjct: 63  GTLFGEKYEPARSEAVGMTCSRPAEYKKTKPEAAAAPSVEKENQSYAEVASILKMEGAHL 122

Query: 122 PGIVNPAQLARWIKM 128
           PGIVNPAQLARWIKM
Sbjct: 123 PGIVNPAQLARWIKM 130

BLAST of Moc07g24480 vs. NCBI nr
Match: KAG6574904.1 (hypothetical protein SDJN03_25543, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.0 bits (458), Expect = 6.3e-42
Identity = 106/140 (75.71%), Postives = 110/140 (78.57%), Query Frame = 0

Query: 1   MSVHSR---TMLPPGASRKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLS 60
           MSVHSR   TMLPP ASRKRKEVE F+K   PKA G     DSVSSN+LLAGYLAHEFLS
Sbjct: 1   MSVHSRTITTMLPPRASRKRKEVEPFVK---PKATG----VDSVSSNQLLAGYLAHEFLS 60

Query: 61  KGTLFGEKYEPARREAI----SLAGECKRTKPE------AAPSVKNENQSYAEVASILKM 120
           KGTLFGEKYEPAR EA+    S   ECKR KPE      AAPSV+ ENQSYAEVASILKM
Sbjct: 61  KGTLFGEKYEPARSEAVRMTSSQPSECKRMKPEAATAAAAAPSVRKENQSYAEVASILKM 120

Query: 121 DGAHLPGIVNPAQLARWIKM 128
           DGAHLPGIVNPAQLARWIKM
Sbjct: 121 DGAHLPGIVNPAQLARWIKM 133

BLAST of Moc07g24480 vs. NCBI nr
Match: KAG7026157.1 (hypothetical protein SDJN02_12656, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 101/135 (74.81%), Postives = 109/135 (80.74%), Query Frame = 0

Query: 2   SVHSR---TMLPPGASRKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLSK 61
           SVHSR   TMLPPGASRKRKEVE+F+KP A  A       DSV SNRLLAGYLAHEFLSK
Sbjct: 3   SVHSRTTTTMLPPGASRKRKEVETFVKPKAVGA-------DSVVSNRLLAGYLAHEFLSK 62

Query: 62  GTLFGEKYEPARREAISLA----GECKRTKPE--AAPSVKNENQSYAEVASILKMDGAHL 121
           GTLFGEKYEPAR EA+ +      E K+TKPE  AAPSV+ ENQSYAEVASILKM+GAHL
Sbjct: 63  GTLFGEKYEPARSEAVGMTCSRPAEYKKTKPEAAAAPSVEKENQSYAEVASILKMEGAHL 122

Query: 122 PGIVNPAQLARWIKM 128
           PGIVNPAQLARWIK+
Sbjct: 123 PGIVNPAQLARWIKI 130

BLAST of Moc07g24480 vs. ExPASy TrEMBL
Match: A0A6J1HJY7 (uncharacterized protein LOC111464257 OS=Cucurbita moschata OX=3662 GN=LOC111464257 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.3e-42
Identity = 102/135 (75.56%), Postives = 109/135 (80.74%), Query Frame = 0

Query: 2   SVHSR---TMLPPGASRKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLSK 61
           SVHSR   TMLPPGASRKRKEVE+F+KP A  A       DSV SNRLLAGYLAHEFLSK
Sbjct: 3   SVHSRTTTTMLPPGASRKRKEVEAFVKPKAVGA-------DSVVSNRLLAGYLAHEFLSK 62

Query: 62  GTLFGEKYEPARREAISLA----GECKRTKPE--AAPSVKNENQSYAEVASILKMDGAHL 121
           GTLFGEKYEPAR EA+ +      E K+TKPE  AAPSV+ ENQSYAEVASILKM+GAHL
Sbjct: 63  GTLFGEKYEPARSEAVGMTCSRPAEYKKTKPEAAAAPSVEKENQSYAEVASILKMEGAHL 122

Query: 122 PGIVNPAQLARWIKM 128
           PGIVNPAQLARWIKM
Sbjct: 123 PGIVNPAQLARWIKM 130

BLAST of Moc07g24480 vs. ExPASy TrEMBL
Match: A0A6J1KXG9 (uncharacterized protein LOC111499092 OS=Cucurbita maxima OX=3661 GN=LOC111499092 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.9e-42
Identity = 103/136 (75.74%), Postives = 108/136 (79.41%), Query Frame = 0

Query: 1   MSVHSR---TMLPPGASRKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLS 60
           MS HSR   TMLPP ASRKRKEVE F+K   PKA G     DSVSSN+LLAGYLAHEFLS
Sbjct: 1   MSFHSRTITTMLPPRASRKRKEVEPFVK---PKATG----VDSVSSNQLLAGYLAHEFLS 60

Query: 61  KGTLFGEKYEPARREAISLA----GECKRTKPE--AAPSVKNENQSYAEVASILKMDGAH 120
           KGTLFGEKYEP R EA+ +      ECKRTKPE  AAPSV+ EN SYAEVASILKMDGAH
Sbjct: 61  KGTLFGEKYEPPRSEAVGMTSSQPSECKRTKPEAAAAPSVRKENHSYAEVASILKMDGAH 120

Query: 121 LPGIVNPAQLARWIKM 128
           LPGIVNPAQLARWIKM
Sbjct: 121 LPGIVNPAQLARWIKM 129

BLAST of Moc07g24480 vs. ExPASy TrEMBL
Match: A0A6J1H3W4 (uncharacterized protein LOC111460190 OS=Cucurbita moschata OX=3662 GN=LOC111460190 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 101/142 (71.13%), Postives = 107/142 (75.35%), Query Frame = 0

Query: 1   MSVHSR---TMLPPGASRKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLS 60
           MSVHSR   TMLPP ASRKRKEVE F+KP A          DSVSSN+LLAGYLAHEFLS
Sbjct: 1   MSVHSRTITTMLPPRASRKRKEVEPFVKPKATAV-------DSVSSNQLLAGYLAHEFLS 60

Query: 61  KGTLFGEKYEPARREAISLA----GECKRTKPE--------AAPSVKNENQSYAEVASIL 120
           KGTLFGEKYEPAR EA+ +      ECKR KPE        AAPSV+ E+ SYAEVASIL
Sbjct: 61  KGTLFGEKYEPARSEAVGMTSSQPSECKRMKPEAATAAAAAAAPSVRKEDHSYAEVASIL 120

Query: 121 KMDGAHLPGIVNPAQLARWIKM 128
           KMDGAHLPGIVNPAQLARWIKM
Sbjct: 121 KMDGAHLPGIVNPAQLARWIKM 135

BLAST of Moc07g24480 vs. ExPASy TrEMBL
Match: A0A5A7UAS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00360 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.2e-33
Identity = 85/126 (67.46%), Postives = 94/126 (74.60%), Query Frame = 0

Query: 8   MLPPGAS-RKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLSKGTLFGEKY 67
           M PPG S RKRKEVE  +KP          E D++S+NRLLAGYLAHEFLS GTLFGEKY
Sbjct: 1   MSPPGGSPRKRKEVEPLVKPKV-------AEADAISANRLLAGYLAHEFLSNGTLFGEKY 60

Query: 68  EPARREAISLA----GECKRTKPEAAPS-VKNENQSYAEVASILKMDGAHLPGIVNPAQL 127
           E A+ EA+ +A     ECKRTKPEAA + +K  N SYAEVASILKMDGAHLPGIVNP QL
Sbjct: 61  ETAQTEAVGMANLQSAECKRTKPEAAAAGIKKLNPSYAEVASILKMDGAHLPGIVNPGQL 119

BLAST of Moc07g24480 vs. ExPASy TrEMBL
Match: A0A0A0LI65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173040 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.8e-33
Identity = 85/126 (67.46%), Postives = 91/126 (72.22%), Query Frame = 0

Query: 8   MLPPGAS-RKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLSKGTLFGEKY 67
           M PPG S RKRKEVE  +KP          E DS+S+NRLLAGYLAHEFL  GTLFGEKY
Sbjct: 1   MSPPGGSPRKRKEVEPLVKPKV-------AEADSISANRLLAGYLAHEFLCNGTLFGEKY 60

Query: 68  EPARREAISLAG----ECKRTKPE-AAPSVKNENQSYAEVASILKMDGAHLPGIVNPAQL 127
           EPA  EA+ +A     ECKRTK E AA S+K  N SYAEVA ILKMDGAHLPGIVNP QL
Sbjct: 61  EPALNEAVGMANSQSTECKRTKLEAAAASIKKVNHSYAEVARILKMDGAHLPGIVNPGQL 119

BLAST of Moc07g24480 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-19
Identity = 48/94 (51.06%), Postives = 68/94 (72.34%), Query Frame = 0

Query: 39  DSVSSNRLLAGYLAHEFLSKGTLFGEKYEPARREAISLAGEC---KRTKP--EAAPSVKN 98
           + V SN+LLAGYLAHEFL+ GTLFGE + P + +A  L  +    ++ KP  +  PS  +
Sbjct: 58  EPVCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQAGPLTTQSIDPRKNKPSHDIEPS-DH 117

Query: 99  ENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM 128
           + + Y EVA+IL++DG HLPGIVNP+QLAR++K+
Sbjct: 118 KRRRYVEVANILRVDGTHLPGIVNPSQLARFLKL 150

BLAST of Moc07g24480 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 )

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-18
Identity = 50/116 (43.10%), Postives = 67/116 (57.76%), Query Frame = 0

Query: 12  GASRKRKEVESFMKPLAPKAGGGGGEGDSVSSNRLLAGYLAHEFLSKGTLFGEKYEPARR 71
           GASRKRK+ ES ++             ++ + N LLAGY+AHE+L+ GT+ G K      
Sbjct: 10  GASRKRKDTESDLR-------------EAATPNWLLAGYMAHEYLTCGTMLGRKLYSGWA 69

Query: 72  EAISLAGECKRTKPEAAPSVKNENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM 128
           E     G      P  +  VK   QSY+EVAS+ K DG H+PG+VNP QLA+WI+M
Sbjct: 70  E----VGPLVSPSPLQSREVKKARQSYSEVASVFKTDGNHVPGVVNPTQLAKWIQM 108

BLAST of Moc07g24480 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 7.5e-17
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 0

Query: 24  MKPLAPKAGGGGGEGDSVSSNRL-LAGYLAHEFLSKGTLFGEKYEPARREAISLAGECKR 83
           + P++ K+     E   + SN+L LAGYL+HE+L++GTLFGE++  AR +A     E  +
Sbjct: 51  VNPISKKSSTAAAE--PIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQA-----ESSK 110

Query: 84  TKP----EAAPSVKNENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM 128
            KP    E A   + + + Y EVA++L+ DGA LPGIVNPAQLAR++K+
Sbjct: 111 IKPSHTVEPAEECEPKRKRYREVANLLRSDGAQLPGIVNPAQLARFLKL 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023547636.12.2e-4276.09uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo] >XP_023547637.... [more]
XP_022964143.14.8e-4275.56uncharacterized protein LOC111464257 [Cucurbita moschata][more]
KAG6593829.14.8e-4275.56hypothetical protein SDJN03_13305, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6574904.16.3e-4275.71hypothetical protein SDJN03_25543, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7026157.11.4e-4174.81hypothetical protein SDJN02_12656, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HJY72.3e-4275.56uncharacterized protein LOC111464257 OS=Cucurbita moschata OX=3662 GN=LOC1114642... [more]
A0A6J1KXG98.9e-4275.74uncharacterized protein LOC111499092 OS=Cucurbita maxima OX=3661 GN=LOC111499092... [more]
A0A6J1H3W42.0e-4171.13uncharacterized protein LOC111460190 OS=Cucurbita moschata OX=3662 GN=LOC1114601... [more]
A0A5A7UAS91.2e-3367.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LI655.8e-3367.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G44060.18.0e-1951.06unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G23440.11.4e-1843.10embryo sac development arrest 6 [more]
AT1G04000.17.5e-1744.95unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availablePANTHERPTHR34657EMBRYO SAC DEVELOPMENT ARREST 6coord: 35..127
NoneNo IPR availablePANTHERPTHR34657:SF4EMBRYO SAC DEVELOPMENT ARREST 6coord: 35..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g24480.1Moc07g24480.1mRNA