Moc07g24350 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g24350
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Actin-related protein 2/3 complex subunit 2
Location	chr7: 18149181 .. 18151143 (+)
RNA-Seq Expression	Moc07g24350
Synteny	Moc07g24350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTGGAAGGAACCGCCAAATAGGCTCACTGCGAAGAAATTCATCTTCGGCGCCACCGTCGCCGGCGAAGATACCGACGAGCATCTGCCGGCCAATGTCCGTCCGGAACGTACATAACAAACCATCCCACCGGCTGAACTGTGTTCGATTGGAGTTCAGCGGTTGAACTTGCCGGCCAACGCGTCGAGTTGATCGAATCTTGTACATAAATTTTACCGGACATCGTTTTCCATTCTCATCAGATTTATTGAAACGGTCGTTCTTTGATTCTGTTTGTTTCGAAACCGTTCGATTCATTATTTGTTTTACGTTACCCTATGACCTCTTATTGGGATTTTCTAAATTTTATTGATGGTTATTGTTTGAATCGTGCTTCGTAGTTCTGCCTGAGATATATTGTTTTCTGTCACTTTCTTGGAATTCCACTCGTCGTTGTCGAGTTCTCTTGGTTGGATTTTATTCCTTTGTTATTCTTTTCTGGGCAATAGGGCCAGAGAAGTGAATGTTGATCTCTGAAGCGGGGTTGTAACAGGTAGAATTTTGGGATTTTAGGGTCAGGTTTGGTGAAATATTGGATTTGTGATATTTTGGTGACTTAGATTTTCTTTCCCCCCACGAAATCATCTCAAATTTCCTTGAGAATTCCATAGATCCGTCTGTTTCTGTCGGTGTTGATTGGGGAGCTTTGCTTGGAGTAATTTGTGGATGTAAAAGGCTGCCAAAGACGTTAATGGCTGTAAATAGACATTTTGGTTCTGTAGGCTCCGAGAAGGTTGAGGATCATGTTAATGGGGACAGCAACGTTGAATCAATGGCATTATTGCCACCTCGAAGAGGTGGGATTTCAAAGAAACTGGATAAACCGAGGCGAAAAGTGCAGTGGAATGATAACAATGGACGTAAGTTGACGGAGGTAATGGTATTCGAACCAAGGTAATGTGATCTCTCTGTCCTTTCACATTTTTACATGGCGTACTTTGAATGAGTGTTTAAATTATTTTGACGTTCTTCTATGTTTATTCGTACCATTTTATATTCTATACACTGGTCAGTGCCTAGAGATGGATAGTGGGTACCTTGCAAATTGCACCTCTGTGTTTTAAACATAGTTTCAAATCTTGAACTCGTACTCTTCTATTAAAGTTTTAACTCTTTTTTTTTTTTTTAAATGGAATTAGTATACACGGTTGGTTCTATGTATACCATGTGTATCAATTCCGTTAAAACTACAAAGGGAAGTGTATAATCTGTAAATTTGCAAACTATAGGAAGTTTGAAATCATTTTTAAGATACAAGATCTTATAATTAGGAAATCAAGCAAACTACAAGGTGTAGTCTGTAATTTCCCTATTCCAAGTTATGCCTGACCTTCCTCAGATAAATTTGTTACGCTTAAGGTTTCATGGTGCCTCCATGATTTGAAAGAACTTTTTGTGTTTTGGATACTTGCTTTTAAGTGGATTGGGTTGCTATTTCTGATTTTGGATAATTCTAATTGTTCCATTACTTTTATCGTTATTTGTTTCTTAGAGTGAGTAGCCATATCTTGAAATTTTTGGTTTTTTAGAGTGTAATTCTATTATGGAATTTTGGGATAGGACGAAAGTGGGATGTTCATTTGGTTTGAGGATCTTTAGTTATTTGAGCTGATGAAGTTGTTTGCTAGATATTTAGCTCAAACAGAACAAATATATTTGTTAAGAATCCCTGGTTTTCTGAGTGCTACCTGTCTTAAGTTAATGAACTAAAATGAGACTCATTTATTGGTTTATGCATCTGAAACATTATTACCAACCAAATTTCTACGGATAACAATAGCCTAGAGATTACAATTTAAAAGACATTCTAGCTTTCTCATAGATATCACGTTGATTCATTTTATTTCCGTCTTTGTGTCGCAGTTATGAAAGTGACTCAGAAGATGATGAATCTGATGCCTGTATGTGTACTGTAATGTAA

mRNA sequence

ATGATTTGGAAGGAACCGCCAAATAGGCTCACTGCGAAGAAATTCATCTTCGGCGCCACCGTCGCCGGCGAAGATACCGACGAGCATCTGCCGGCCAATGTCCATTTTCTTTCCCCCCACGAAATCATCTCAAATTTCCTTGAGAATTCCATAGATCCGTCTGTTTCTGTCGGTGTTGATTGGGGAGCTTTGCTTGGAGTAATTTGTGGATGTAAAAGGCTGCCAAAGACGTTAATGGCTGTAAATAGACATTTTGGTTCTGTAGGCTCCGAGAAGGTTGAGGATCATGTTAATGGGGACAGCAACGTTGAATCAATGGCATTATTGCCACCTCGAAGAGGTGGGATTTCAAAGAAACTGGATAAACCGAGGCGAAAAGTGCAGTGGAATGATAACAATGGACGTAAGTTGACGGAGGTAATGGTATTCGAACCAAGTTATGAAAGTGACTCAGAAGATGATGAATCTGATGCCTGTATGTGTACTGTAATGTAA

Coding sequence (CDS)

ATGATTTGGAAGGAACCGCCAAATAGGCTCACTGCGAAGAAATTCATCTTCGGCGCCACCGTCGCCGGCGAAGATACCGACGAGCATCTGCCGGCCAATGTCCATTTTCTTTCCCCCCACGAAATCATCTCAAATTTCCTTGAGAATTCCATAGATCCGTCTGTTTCTGTCGGTGTTGATTGGGGAGCTTTGCTTGGAGTAATTTGTGGATGTAAAAGGCTGCCAAAGACGTTAATGGCTGTAAATAGACATTTTGGTTCTGTAGGCTCCGAGAAGGTTGAGGATCATGTTAATGGGGACAGCAACGTTGAATCAATGGCATTATTGCCACCTCGAAGAGGTGGGATTTCAAAGAAACTGGATAAACCGAGGCGAAAAGTGCAGTGGAATGATAACAATGGACGTAAGTTGACGGAGGTAATGGTATTCGAACCAAGTTATGAAAGTGACTCAGAAGATGATGAATCTGATGCCTGTATGTGTACTGTAATGTAA

Protein sequence

MIWKEPPNRLTAKKFIFGATVAGEDTDEHLPANVHFLSPHEIISNFLENSIDPSVSVGVDWGALLGVICGCKRLPKTLMAVNRHFGSVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEVMVFEPSYESDSEDDESDACMCTVM

Homology

[Close]

BLAST of Moc07g24350 vs. NCBI nr
Match: XP_022138680.1 (uncharacterized protein LOC111009782 [Momordica charantia] >XP_022138681.1 uncharacterized protein LOC111009782 [Momordica charantia])

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-40
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 79  MAVNRHFGSVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLT 138
           MAVNRHFGSVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLT
Sbjct: 1   MAVNRHFGSVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLT 60

Query: 139 EVMVFEPSYESDSEDDESDACMCTVM 165
           EVMVFE SYESDSEDDESDACMCTVM
Sbjct: 61  EVMVFEXSYESDSEDDESDACMCTVM 86

[Close]

BLAST of Moc07g24350 vs. NCBI nr
Match: XP_007145827.1 (hypothetical protein PHAVU_007G271300g [Phaseolus vulgaris] >ESW17821.1 hypothetical protein PHAVU_007G271300g [Phaseolus vulgaris])

HSP 1 Score: 115.2 bits (287), Expect = 5.5e-22
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 87  SVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEVMVFEPS 146
           ++GSEKVEDHVNGD   +S +LLPPRRGG+S+  DK RRKVQWND NG KL EV+ +EPS
Sbjct: 22  TLGSEKVEDHVNGDDESDSNSLLPPRRGGMSRNSDKTRRKVQWNDRNGNKLAEVLEYEPS 81

Query: 147 YESDSEDDESDACMCTVM 165
             SDSED++SD+C+CT+M
Sbjct: 82  DVSDSEDEDSDSCICTIM 99

[Close]

BLAST of Moc07g24350 vs. NCBI nr
Match: XP_020226457.1 (uncharacterized protein LOC109808052 isoform X2 [Cajanus cajan])

HSP 1 Score: 115.2 bits (287), Expect = 5.5e-22
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 87  SVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEVMVFEPS 146
           S+G EKVEDHVNG+ + +S ALLPPRRGG+S+  DK RRKVQWND NG KL EV+ +EPS
Sbjct: 20  SLGGEKVEDHVNGEDDSDSNALLPPRRGGMSRNCDKTRRKVQWNDRNGNKLAEVLEYEPS 79

Query: 147 YESDSEDDESDACMCTVM 165
             SDSED++SD+C+CT+M
Sbjct: 80  DVSDSEDEDSDSCICTIM 97

[Close]

BLAST of Moc07g24350 vs. NCBI nr
Match: XP_027938019.1 (uncharacterized protein LOC114192484 [Vigna unguiculata])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 87  SVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEVMVFEPS 146
           S+ SEKVEDHVNGD + +S +LLPPRRGG+S+  DK RRKVQWND NG KL EV+ +EPS
Sbjct: 21  SLRSEKVEDHVNGDDDSDSNSLLPPRRGGMSRNCDKTRRKVQWNDRNGNKLAEVLEYEPS 80

Query: 147 YESDSEDDESDACMCTVM 165
             SDSED++SD+C+CT+M
Sbjct: 81  DVSDSEDEDSDSCICTIM 98

[Close]

BLAST of Moc07g24350 vs. NCBI nr
Match: XP_028769568.1 (uncharacterized protein LOC114727030 [Prosopis alba] >XP_028780944.1 uncharacterized protein LOC114737205 [Prosopis alba])

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-21
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 81  VNRHFGSVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEV 140
           VN+   SV +E+VED  NG+ + +S +LLPPRRGG+S+K DK RRKVQWND NG +L EV
Sbjct: 12  VNKPVASVDAERVEDRTNGEDDSDSHSLLPPRRGGLSRKSDKTRRKVQWNDRNGNQLVEV 71

Query: 141 MVFEPSYESDSEDDESDACMCTVM 165
           + F PS +SDSED+ESD+C+CT+M
Sbjct: 72  LEFIPSDDSDSEDEESDSCICTIM 95

[Close]

BLAST of Moc07g24350 vs. ExPASy TrEMBL
Match: A0A6J1CA45 (uncharacterized protein LOC111009782 OS=Momordica charantia OX=3673 GN=LOC111009782 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.7e-40
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 79  MAVNRHFGSVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLT 138
           MAVNRHFGSVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLT
Sbjct: 1   MAVNRHFGSVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLT 60

Query: 139 EVMVFEPSYESDSEDDESDACMCTVM 165
           EVMVFE SYESDSEDDESDACMCTVM
Sbjct: 61  EVMVFEXSYESDSEDDESDACMCTVM 86

[Close]

BLAST of Moc07g24350 vs. ExPASy TrEMBL
Match: V7BMK7 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G271300g PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-22
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 87  SVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEVMVFEPS 146
           ++GSEKVEDHVNGD   +S +LLPPRRGG+S+  DK RRKVQWND NG KL EV+ +EPS
Sbjct: 22  TLGSEKVEDHVNGDDESDSNSLLPPRRGGMSRNSDKTRRKVQWNDRNGNKLAEVLEYEPS 81

Query: 147 YESDSEDDESDACMCTVM 165
             SDSED++SD+C+CT+M
Sbjct: 82  DVSDSEDEDSDSCICTIM 99

[Close]

BLAST of Moc07g24350 vs. ExPASy TrEMBL
Match: A0A1S3V9S4 (uncharacterized protein LOC106772854 OS=Vigna radiata var. radiata OX=3916 GN=LOC106772854 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-21
Identity = 51/78 (65.38%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 87  SVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEVMVFEPS 146
           S+ SEKVEDHVNGD + +S +LLPPRRGG+S+  DK RR VQWND NG KL EV+ +EPS
Sbjct: 21  SLRSEKVEDHVNGDDDSDSNSLLPPRRGGMSRNSDKTRRSVQWNDRNGNKLAEVLEYEPS 80

Query: 147 YESDSEDDESDACMCTVM 165
             SDSED++SD+C+CT+M
Sbjct: 81  DASDSEDEDSDSCICTIM 98

[Close]

BLAST of Moc07g24350 vs. ExPASy TrEMBL
Match: A0A0S3SUX6 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G356500 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-21
Identity = 51/78 (65.38%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 87  SVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEVMVFEPS 146
           S+ SEKVEDHVNGD + +S +LLPPRRGG+S+  DK RR VQWND NG KL EV+ +EPS
Sbjct: 21  SLRSEKVEDHVNGDDDSDSNSLLPPRRGGMSRNSDKTRRSVQWNDRNGNKLAEVLEYEPS 80

Query: 147 YESDSEDDESDACMCTVM 165
             SDSED++SD+C+CT+M
Sbjct: 81  DASDSEDEDSDSCICTIM 98

[Close]

BLAST of Moc07g24350 vs. ExPASy TrEMBL
Match: A0A0B2QZ08 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_053549 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-20
Identity = 49/78 (62.82%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 87  SVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEVMVFEPS 146
           S+  EKVEDHVNG+ + +S +LLPPRRGG+S+  +K RRKVQWND NG KL EV+ +EPS
Sbjct: 21  SLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKVQWNDRNGNKLAEVLEYEPS 80

Query: 147 YESDSEDDESDACMCTVM 165
             SDSED++SD+C+CT+M
Sbjct: 81  DVSDSEDEDSDSCICTIM 98

[Close]

BLAST of Moc07g24350 vs. TAIR 10
Match: AT2G33390.1 (unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-19
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 82  NRHFGSVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEVM 141
           N+   S+ S ++ED +  +   ES  LLPPR+GG+S+  DK +R VQWND  G  L EV+
Sbjct: 16  NKAIVSLNSSEIEDQIFEEEESESQCLLPPRKGGMSRSTDKIKRTVQWNDIKGDNLAEVL 75

Query: 142 VFEPSYESDSEDDESDACMCTVM 165
           V+EPS  SD+EDD+SD+C+CT+M
Sbjct: 76  VYEPSEVSDTEDDDSDSCICTIM 98

[Close]

BLAST of Moc07g24350 vs. TAIR 10
Match: AT1G34010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22790.2); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-05
Identity = 31/82 (37.80%), Postives = 41/82 (50.00%), Query Frame = 0


Query: 87  SVGSEKVEDHVNGDSNVESMALLPPRRGGISKKLDKPRRKVQWNDNNGRKLTEVMVFEPS 146
           S+      D V GD +V         R G+   +D  RRKVQW D  G ++ EV  FEPS
Sbjct: 111 SLKKRSFSDVVIGDDDVS--------RDGVVDHID--RRKVQWPDTCGIEIAEVREFEPS 170

Query: 147 YESDSEDD----ESDACMCTVM 165
              +SED+       +CMCT+M
Sbjct: 171 EVDESEDEFHHGSGKSCMCTIM 182

[Close]

BLAST of Moc07g24350 vs. TAIR 10
Match: AT1G55475.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 4.2e-04
Identity = 17/43 (39.53%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 122 KPRRKVQWNDNNGRKLTEVMVFEPSYESDSEDDESDACMCTVM 165
           + ++KVQW D  G++L E+  FEPS E D + D    C+C ++
Sbjct: 78  REKKKVQWVDVIGKELAEIREFEPSDEDDIDSDRGKTCVCIIL 120

The following BLAST results are available for this feature:

BLAST of Moc07g24350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138680.1	3.4e-40	98.84	uncharacterized protein LOC111009782 [Momordica charantia] >XP_022138681.1 uncha...	[more]
XP_007145827.1	5.5e-22	66.67	hypothetical protein PHAVU_007G271300g [Phaseolus vulgaris] >ESW17821.1 hypothet...	[more]
XP_020226457.1	5.5e-22	66.67	uncharacterized protein LOC109808052 isoform X2 [Cajanus cajan]	[more]
XP_027938019.1	1.2e-21	66.67	uncharacterized protein LOC114192484 [Vigna unguiculata]	[more]
XP_028769568.1	4.6e-21	60.71	uncharacterized protein LOC114727030 [Prosopis alba] >XP_028780944.1 uncharacter...	[more]

BLAST of Moc07g24350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g24350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CA45	1.7e-40	98.84	uncharacterized protein LOC111009782 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
V7BMK7	2.7e-22	66.67	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G271300g PE=4 ...	[more]
A0A1S3V9S4	2.3e-21	65.38	uncharacterized protein LOC106772854 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]
A0A0S3SUX6	2.3e-21	65.38	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G...	[more]
A0A0B2QZ08	2.5e-20	62.82	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_053549 PE=4 SV=1	[more]

BLAST of Moc07g24350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33390.1	1.6e-19	50.60	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bac...	[more]
AT1G34010.1	2.9e-05	37.80	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G55475.1	4.2e-04	39.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33401:SF2	OS03G0138400 PROTEIN	coord: 87..164
None	No IPR available	PANTHER	PTHR33401	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTIC	coord: 87..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g24350.1	Moc07g24350.1	mRNA