Moc07g22920 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g22920
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNA polymerase sigma factor
Location	chr7: 16926388 .. 16930715 (-)
RNA-Seq Expression	Moc07g22920
Synteny	Moc07g22920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCACCCCGAAACATTCTCAATCCAATTCAAGACGACGGCCATAACGGTTACAACCACGGCTAATTACTCTCACCATCATAACTTTCTTCCCACCGCCAATTCCAGTTGCAGTGAGTCTCTTACTCTGTCGTTCTGTCGTTTCCCAGTTTTTATCTTGTGGTGCTCAAATGGGTTTTTGCTGTTTTTGATGTCTTGTTTGTGTGTTGCTTGATTTTCAATCTGAGCCCAAATGGGTTGCTGCTAGTTGATTAGTCCAGCCATGGCTTCAAGTTTTTTGAGTTGGATTGCTTTAAATGGTGGAAGGATTTTCAAATGTGGTTGTGTAGCATCTAAGTACTGATTTGCCTTGAAACATCTCCCAAATGATGCTTGATAGTTTTGACATTGTTATAGTATCTGATGAGGATTTCGAGACATATTTTCTTTTTCAAATATATTGTGCAAGTTTTAGGTAGACTGTTCCTCATGCTATTGAAATACTGTGTTGTGTGCTCCATCTGCCATAGATATATGGTTTATCTCTGCTTGGCCATTTTGGCCATATGGTGATCAAATAAGTGATTGGAAAATATAGTCTCAGTGCCACCAGGAGTGGAACAAGGAAGGAAGGTTACTCTTACTTAGTTCGTCTTAGATTAAAAAGATTATACAAAGCAGTTAAGATTTTAACGCTTTTTTTCTCCTTAATTTGCCCTCTCTGAACTTTCAAAATCAAAAGATTATATATATATAAAAAATTAGAAGGTTTAACTTTGCCTCTTCCTATTAAAAATTTTGGCTCTGCCTTGGAGCACGAAGCATCCAATTATCGATATTAAAGGGATTCAAAATGACTTTGGAGCTCGAGAAGACCAATCAAAGGCCTCTTTTCCTCTCTTTAAATAATCAGTAACCTTTTTCCACATCATTATTGAGTTGGCAATTCCTATCTACAGGGGTAATTGATTCCCTATTATTTAAGTAGAATGGAGAAGTGAAGTCCCAAGCATACGAACTTTGGTACTCCTCTTGCACCAGATGGTGATAGAGCAAGAAGCAAGACTTTCTGTGTCAATTTATGCCTTTATGTGAAACATACTTCCAAAACAGCTGATTTCCCATTAAGGATTTCATCTATACGTTTGAAGTTTTGTTTTCATAGATGGAATTATATTGCTGATCCATCTTTACTAAATCTATAACCAAGAAGTTCATTGAGTTGAATGTTAGTGCGAATAGCGTCAATTAATTTTATTGAAAGTTTTCTTATAATATTTGTTTGAATTATGCAGCTAAAGTTAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCTGCATCACCATCAACATCAACTGGAACAGCCACAACATTCAATGTGGAACGACTTAAACTGCCTCCTTTAGATGCTAACACCGACTCGATCTCTGCAGAAAGACTAAGATCATATTTAAGTGCAGTCGAATCAAGTTTTGCCTCGACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCCGTTACTCTTGCGAAAGCAGCTGTCAAGGTTGCTAAGGATGCAGCTCTTCTGGTTAATAATAGCAACTCTTCCAAAACTGGAAAAAAATCTCAATCTTCTTCCAAATCTGATGCTTTACATTTCAAATGGGATCAATTTATGGAATCCGAAAGGGCTGATATAATAGGAGTACCAGTTGGGGTTAATAATCGCCCTGCGGAAGGTGATGCTCTGCAACACGACACGGCAGAATCTGATTACACAGATCCAACAACTGAAGAACTTGAACTTTTACAGGACGAACTCTCTAATATAGCTGTAAGGTCAAGGCGTCAGACAGAACGGAGGGCTAAAAGAACACGAGCAGCAGAGAAGATTGCTACTAGTGTAGTGTCAGTGAAGTCTGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGTCCAGGAAGTGGACTACTCCGATCCATTGCGTTACTTAAGAGCGACTACAAGCAATTCTAGACTTCTTACTGCAACTGAAGAACTTGAATTGTCAGAAGGAATTCAGGTTTGATTTTTAGTCATCTAACTGTTTCCTAAAATTATGTCTTTCTACTGGATCAAAGACCACATTGCACATGGGAAAGAGAACATTGATCTCCCAAGTGAAAATAGGATTAAATCAACTCAGCCATGCCTTCATTGAATTAAGTTGTCAGAATTCAACTTTACAGTCATTACTAAACCTGGCTCTGTTTGTTCCTTACCAAACAAACAGCATGTGAATGTCGTTTGATAATTATTTTGTTTTTTAAATTTTAGCTTTTAAACATTACTTCCACTTTTGCTTTTATATCTTCTTTTTAAAGACTAAAAACAGTAGTTCAACACTTGTTTTGTTTGCAACTTTTCCTTCCCAATTTTTTAAAATTAATTTGACATAGAATCTAATGTGTTTGTAATAATGGTGAAACAGAAAACTAGAAATGAAATTGTTATGAAACGTGCTTTAGTTGCCATTTTTCCTCTCTCCAAAAAACAGGGGAATTCATCTCAATGTGGAGAAAATTTTCAATGTTCGTTGGGAATATAAAAGGAAAAGGGAATGAAATGGATATACTCAAACCAAAGAACATGAATTTAGCTTAGTTCGATTAGCTTTGAGACTTAACAGTACTCTTCAATTTCGACAAACTGATAATTTTGCGTGAAAGCGCCTGTAGCACTGTTAGTCTTAAATTACTGATAGCATTTGTTATCTTCATTAAAACCTTCCATAAGCAGTCTGATCCAGCTTGAAGTTAAGAATCTAGTTGTAGTTTCCTTGTATCTGGTTCTCTATTGGAATGCATATAAGAAAGCTATTGTCAACACCTTGGCTATTTTTATGGTGTTTATGGGTTAACATCCTGATTTATTTGTTATTCTGATGTGTCACGTTTGATTCCCGAAATTTGTTTCAATTATTTCTTAATCCAGGACTTATTAAAACTGGAAAGGCTCCAAGAAGAGCTTAGGGAACGGTATGGGAAAGAGCCGACCTTTGCACAATGGGCTGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAACTATGGTACTTTTTGTAAAGATAAAATGATAAAAAGCAACATTCGTCTTGTCATATCGATTGCAAAAAACTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGTACTTTTCATTGTTGCATGCTAGCCCAAAATACTTATCAATGGAGACTGAAATATGAATGCCTTGTTTCAGTTTTGAATTATGCTTGTGTGGACATGCAGGAAGGGTGTCGAGGCCTTGTACGAGGTGCCGAAAAATTTGATGCTTCTAAGGGCTTCAAGTTCTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTCCGAAAGTCTCTTTCTGATCAGTCAAGGACTATTCGCTTGCCAGTATGTTTCTTTTTCACTGTAATTGATTTTGAGTAAACAGGAATGAATTACATTATGTAACAATACAAAGGAGAAAATTTTATAACCAATGAAAGTCCCAATGAGTTTACTAATTGAAGAGATGAATGGGCAGTTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATACAGTGAAAATGGAAGACATCCTGATGATGAAGAAATCGCAGAAGCAGCCGGACTGTCGATGAAGAGGCTCGCTGCAGTACTGATGACTCCGAAAGCACCTCGATCCTTGGAGCAAAAGATCGGGATCAACCAAAATCTCAAACCTTCGGTCCGTCTTATTCCTACCCAGATTTTCTTTGATTCTCATTGCAATATCCACCATCTTTTACCTGTTTGATTCTCATGCTCTTTTACAGGAAGTCATTTCCGACCCCGAAGCAGAAACTTCAGAAGATCTGCTGATAAAACAGTTCATGAAGCAGGATCTCGAAAAGGTACTCGACTCCCTTAACCCGAGAGAGAGACAGGTAATTAGATGGAGGTTTGGGATGGAAGATGGCAGGATGAAAACACTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGGCAAATTGAGTCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGATGATGAGTCTCCATCAAATTCAAGAGTTAGATTCCTCCAAAAGTATCTATTTTCTGATATGAGGCTTAAAGAAGGCTTGTTCTTTCTCTCTTTTTTCTTTTTTTTCTTCTGTAACATATATTATTATGCATCTTTTTTTCTCATTTCAGGATAGAGTAGTATCTGATTGTTGA

mRNA sequence

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCACCCCGAAACATTCTCAATCCAATTCAAGACGACGGCCATAACGGTTACAACCACGGCTAATTACTCTCACCATCATAACTTTCTTCCCACCGCCAATTCCAGTTGCACTAAAGTTAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCTGCATCACCATCAACATCAACTGGAACAGCCACAACATTCAATGTGGAACGACTTAAACTGCCTCCTTTAGATGCTAACACCGACTCGATCTCTGCAGAAAGACTAAGATCATATTTAAGTGCAGTCGAATCAAGTTTTGCCTCGACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCCGTTACTCTTGCGAAAGCAGCTGTCAAGGTTGCTAAGGATGCAGCTCTTCTGGTTAATAATAGCAACTCTTCCAAAACTGGAAAAAAATCTCAATCTTCTTCCAAATCTGATGCTTTACATTTCAAATGGGATCAATTTATGGAATCCGAAAGGGCTGATATAATAGGAGTACCAGTTGGGGTTAATAATCGCCCTGCGGAAGGTGATGCTCTGCAACACGACACGGCAGAATCTGATTACACAGATCCAACAACTGAAGAACTTGAACTTTTACAGGACGAACTCTCTAATATAGCTGTAAGGTCAAGGCGTCAGACAGAACGGAGGGCTAAAAGAACACGAGCAGCAGAGAAGATTGCTACTAGTGTAGTGTCAGTGAAGTCTGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGTCCAGGAAGTGGACTACTCCGATCCATTGCGTTACTTAAGAGCGACTACAAGCAATTCTAGACTTCTTACTGCAACTGAAGAACTTGAATTGTCAGAAGGAATTCAGGACTTATTAAAACTGGAAAGGCTCCAAGAAGAGCTTAGGGAACGGTATGGGAAAGAGCCGACCTTTGCACAATGGGCTGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAACTATGGTACTTTTTGTAAAGATAAAATGATAAAAAGCAACATTCGTCTTGTCATATCGATTGCAAAAAACTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGAAGGGTGTCGAGGCCTTGTACGAGGTGCCGAAAAATTTGATGCTTCTAAGGGCTTCAAGTTCTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTCCGAAAGTCTCTTTCTGATCAGTCAAGGACTATTCGCTTGCCATTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATACAGTGAAAATGGAAGACATCCTGATGATGAAGAAATCGCAGAAGCAGCCGGACTGTCGATGAAGAGGCTCGCTGCAGTACTGATGACTCCGAAAGCACCTCGATCCTTGGAGCAAAAGATCGGGATCAACCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCCGAAGCAGAAACTTCAGAAGATCTGCTGATAAAACAGTTCATGAAGCAGGATCTCGAAAAGGATAGAGTAGTATCTGATTGTTGA

Coding sequence (CDS)

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCACCCCGAAACATTCTCAATCCAATTCAAGACGACGGCCATAACGGTTACAACCACGGCTAATTACTCTCACCATCATAACTTTCTTCCCACCGCCAATTCCAGTTGCACTAAAGTTAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCTGCATCACCATCAACATCAACTGGAACAGCCACAACATTCAATGTGGAACGACTTAAACTGCCTCCTTTAGATGCTAACACCGACTCGATCTCTGCAGAAAGACTAAGATCATATTTAAGTGCAGTCGAATCAAGTTTTGCCTCGACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCCGTTACTCTTGCGAAAGCAGCTGTCAAGGTTGCTAAGGATGCAGCTCTTCTGGTTAATAATAGCAACTCTTCCAAAACTGGAAAAAAATCTCAATCTTCTTCCAAATCTGATGCTTTACATTTCAAATGGGATCAATTTATGGAATCCGAAAGGGCTGATATAATAGGAGTACCAGTTGGGGTTAATAATCGCCCTGCGGAAGGTGATGCTCTGCAACACGACACGGCAGAATCTGATTACACAGATCCAACAACTGAAGAACTTGAACTTTTACAGGACGAACTCTCTAATATAGCTGTAAGGTCAAGGCGTCAGACAGAACGGAGGGCTAAAAGAACACGAGCAGCAGAGAAGATTGCTACTAGTGTAGTGTCAGTGAAGTCTGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGTCCAGGAAGTGGACTACTCCGATCCATTGCGTTACTTAAGAGCGACTACAAGCAATTCTAGACTTCTTACTGCAACTGAAGAACTTGAATTGTCAGAAGGAATTCAGGACTTATTAAAACTGGAAAGGCTCCAAGAAGAGCTTAGGGAACGGTATGGGAAAGAGCCGACCTTTGCACAATGGGCTGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAACTATGGTACTTTTTGTAAAGATAAAATGATAAAAAGCAACATTCGTCTTGTCATATCGATTGCAAAAAACTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGAAGGGTGTCGAGGCCTTGTACGAGGTGCCGAAAAATTTGATGCTTCTAAGGGCTTCAAGTTCTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTCCGAAAGTCTCTTTCTGATCAGTCAAGGACTATTCGCTTGCCATTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATACAGTGAAAATGGAAGACATCCTGATGATGAAGAAATCGCAGAAGCAGCCGGACTGTCGATGAAGAGGCTCGCTGCAGTACTGATGACTCCGAAAGCACCTCGATCCTTGGAGCAAAAGATCGGGATCAACCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCCGAAGCAGAAACTTCAGAAGATCTGCTGATAAAACAGTTCATGAAGCAGGATCTCGAAAAGGATAGAGTAGTATCTGATTGTTGA

Protein sequence

MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKDRVVSDC

Homology

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BLAST of Moc07g22920 vs. NCBI nr
Match: XP_022155781.1 (RNA polymerase sigma factor sigB [Momordica charantia])

HSP 1 Score: 971.8 bits (2511), Expect = 2.3e-279
Identity = 519/519 (100.00%), Postives = 519/519 (100.00%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120
           LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180
           IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKR 240
           DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKR
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKR 240

Query: 241 TRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG 300
           TRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG
Sbjct: 241 TRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG 300

Query: 301 IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLV 360
           IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLV
Sbjct: 301 IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLV 360

Query: 361 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 420
           ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 361 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 420

Query: 421 RTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSL 480
           RTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSL
Sbjct: 421 RTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSL 480

Query: 481 EQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           EQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK
Sbjct: 481 EQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 519

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BLAST of Moc07g22920 vs. NCBI nr
Match: XP_038875580.1 (RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida])

HSP 1 Score: 848.2 bits (2190), Expect = 3.8e-242
Identity = 460/521 (88.29%), Postives = 480/521 (92.13%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYS-HHHNFLPTANSSCTKVRDPHSLRTQC 60
           MSCLLPQFKCHPETFSIQFK       T ANY+ HHH FLPTANSS TKVRDPHSLRTQC
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANYAPHHHTFLPTANSSYTKVRDPHSLRTQC 60

Query: 61  ILSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEA 120
           ILSAASP TSTGTATT NV+RL LPP D NTDS+S ERLRSYL AVESS ASTLLTSEEA
Sbjct: 61  ILSAASPPTSTGTATTLNVDRLMLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA 120

Query: 121 TIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESER 180
           TIAAAAAEAV LAKAAVKVA+DAALL NNSNSS+ G+KS+SS + DALHFKW QFMESER
Sbjct: 121 TIAAAAAEAVALAKAAVKVARDAALLANNSNSSRAGEKSRSSPRPDALHFKWAQFMESER 180

Query: 181 ADIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRA 240
           ADIIG PVGVNNRP E DALQ  T +SD  +PT+EELELLQDELS +I VRS+RQTER+A
Sbjct: 181 ADIIGEPVGVNNRPMETDALQPSTTKSDDMEPTSEELELLQDELSESITVRSKRQTERKA 240

Query: 241 KRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELS 300
           +RTRAAEK ATSVVS+KSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTA EELELS
Sbjct: 241 RRTRAAEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTAAEELELS 300

Query: 301 EGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIR 360
           EGIQDLLKLERLQEEL +RYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIR
Sbjct: 301 EGIQDLLKLERLQEELADRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIR 360

Query: 361 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 420
           LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 361 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 420

Query: 421 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR 480
           QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR
Sbjct: 421 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR 480

Query: 481 SLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           SLEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEK
Sbjct: 481 SLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEK 514

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BLAST of Moc07g22920 vs. NCBI nr
Match: XP_004154029.1 (RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical protein Csa_004860 [Cucumis sativus])

HSP 1 Score: 841.3 bits (2172), Expect = 4.7e-240
Identity = 456/520 (87.69%), Postives = 475/520 (91.35%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T ANYSHHH+FLPTA SS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120
           LSAASP TSTGTATT +V+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEA+
Sbjct: 61  LSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAS 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQSS K DALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240
           DIIG PVGVN RP EGDAL+  T ESD  +PT+EELELLQDELS +I V+S+RQTER+A+
Sbjct: 181 DIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300
           RTRAAEK  TSV+S KSGSSSRKKRNSVQEVDYSDPLRYLRATT+ SRLLTATEELELSE
Sbjct: 241 RTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           LEQKIGINQNLKPSEVISDPEAET ED+LIKQFMKQDLEK
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEK 513

[Close]

BLAST of Moc07g22920 vs. NCBI nr
Match: KAA0039984.1 (RNA polymerase sigma factor sigB isoform X1 [Cucumis melo var. makuwa] >TYK24518.1 RNA polymerase sigma factor sigB isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 840.1 bits (2169), Expect = 1.0e-239
Identity = 456/520 (87.69%), Postives = 474/520 (91.15%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T AN SHHH+FLPTA SS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120
           LSAASP TSTGTATT NV+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQ S K DALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240
           DIIG PVGVN RP EGDAL+  T ESD  +PT+EELELLQDELS +I V+S+RQTER+A+
Sbjct: 181 DIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300
           RTRAAEK  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Sbjct: 241 RTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           LEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEK
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEK 513

[Close]

BLAST of Moc07g22920 vs. NCBI nr
Match: XP_008460092.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo])

HSP 1 Score: 837.8 bits (2163), Expect = 5.1e-239
Identity = 454/520 (87.31%), Postives = 474/520 (91.15%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T AN SHHH+F+PTA SS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120
           LSAASP TSTGTATT NV+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQ S K DALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240
           DIIG PVGVN RP EGDAL+  T ESD  +PT++ELELLQDELS +I V+S+RQTER+A+
Sbjct: 181 DIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300
           RTRAAEK  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Sbjct: 241 RTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           LEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEK
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEK 513

[Close]

BLAST of Moc07g22920 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 539.3 bits (1388), Expect = 5.0e-152
Identity = 320/533 (60.04%), Postives = 393/533 (73.73%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSL--RTQC 61
           SCLLPQFKC P++FSI F+T                      S C    +  S+  + QC
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT----------------------SFCAPKHNKGSVFFQPQC 62

Query: 62  ILSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSY---------LSAVESSFA 121
            +S  SP+  T   +  +V +L+LP  D ++DS+ ++R  +Y            +E+  +
Sbjct: 63  AVS-TSPALLT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALAS 122

Query: 122 STLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFK 181
            TLLTS+EA + AAAAEAV LA+AAVKVAKDA L  N++N++       +SS +D    K
Sbjct: 123 ETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLL-----TSSTADK-RSK 182

Query: 182 WDQFMESERADIIG-VPVGVNNRPAEGDALQHDTAES--DYTDPTTEELELLQDELS-NI 241
           WDQF E ERA I+G + V  N   ++         ES  D      EE+ELL+++ S ++
Sbjct: 183 WDQFTEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSL 242

Query: 242 AVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNS 301
           AVRS RQTER+A+R +  EK A+ + SVK+GSS +KKR   QEVD++DPLRYLR TTS+S
Sbjct: 243 AVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSS 302

Query: 302 RLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGT 361
           +LLT  EE ELS GIQDLLKLERLQ EL ER G++PTFAQWA+AAGV+Q++LR+R+++GT
Sbjct: 303 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 362

Query: 362 FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 421
            CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHW
Sbjct: 363 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 422

Query: 422 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKR 481
           WIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKR
Sbjct: 423 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKR 482

Query: 482 LAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           L AVL++PK PRSL+QKIG+NQNLKPSEVI+DPEA TSED+LIK+FM+QDL+K
Sbjct: 483 LMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDK 503

[Close]

BLAST of Moc07g22920 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.8e-53
Identity = 114/267 (42.70%), Postives = 171/267 (64.04%), Query Frame = 0


Query: 255 KSGSSSRKKRNSVQEVDY--SDPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQE 314
           KSG +++ +R +  +  +   D +R         RLL A EE+EL+  I DLL+LER++E
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118

Query: 315 ELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGM 374
            L E+  ++P  ++WA A  +     R RL+ G   KDKM++SN+RLV+SIAK Y   G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178

Query: 375 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 434
           + QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E 
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238

Query: 435 TYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP 494
             R+K+  K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  ++ + 
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298

Query: 495 SEVISDPEAETSEDLLIKQFMKQDLEK 520
            + I + + ET ED + K  +++DLEK
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEK 324

[Close]

BLAST of Moc07g22920 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 3.4e-52
Identity = 125/319 (39.18%), Postives = 187/319 (58.62%), Query Frame = 0


Query: 213 TEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSV-------------KSGSS 272
           T+  ELL   L     +++R +  R K T A  + AT++                +   +
Sbjct: 17  TQATELLDPALKPAETKAKRSS--RKKATTAVVEPATTIAPTADVDAIDDEDSVGEDEDA 76

Query: 273 SRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYG 332
           + K +  V++    D +R         RLL A EE+EL+  I DLL LER+++EL E+  
Sbjct: 77  AAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLD 136

Query: 333 KEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 392
           + P+ A+WAAA        R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+Q
Sbjct: 137 RLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 196

Query: 393 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 452
           EG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+K+ 
Sbjct: 197 EGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKT 256

Query: 453 RKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP 512
            K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  ++ +  + I + 
Sbjct: 257 TKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EA 316

Query: 513 EAETSEDLLIKQFMKQDLE 519
           + ET ED + K  +++DLE
Sbjct: 317 DGETPEDEVAKNLLREDLE 332

[Close]

BLAST of Moc07g22920 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.3e-47
Identity = 123/342 (35.96%), Postives = 183/342 (53.51%), Query Frame = 0


Query: 176 ESERADIIGVPVGVNNRPAEGDALQHDT---AESDYTDPTTEELELLQDELSNIAVRSRR 235
           ++E  D++ +     +   +   L  DT      +  D  +    +   E  NI VRS+R
Sbjct: 134 DAELCDVVALAQKALSASKQAALLVDDTEANPSDNIKDSLSTSSSMSLPEKGNI-VRSKR 193

Query: 236 QTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTAT 295
           Q ERRAK  RA +             +S KK+   Q  D  D L+         +LLTA 
Sbjct: 194 QLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQLLTAK 253

Query: 296 EELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKM 355
           EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++ G   ++K+
Sbjct: 254 EEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKL 313

Query: 356 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 415
           I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+WWI+Q++
Sbjct: 314 ITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSI 373

Query: 416 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLM 475
           RKS+   SRTIRLP ++     +V EARK    E    P  EE+A   G+S ++L  +L 
Sbjct: 374 RKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLY 433

Query: 476 TPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMK 515
             + P S++Q I  +Q+    E+  D   ET    + KQ M+
Sbjct: 434 NTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMR 473

[Close]

BLAST of Moc07g22920 vs. ExPASy Swiss-Prot
Match: Q31ME3 (RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA2 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.8e-46
Identity = 103/253 (40.71%), Postives = 156/253 (61.66%), Query Frame = 0


Query: 266 SVQEVDYS-DPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTF 325
           S     YS D +R         RLLTA EEL     +Q L+ L   Q ELR+R G EP+ 
Sbjct: 2   STSSAQYSPDLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSK 61

Query: 326 AQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 385
            +WAAA  +N   L +++  G   K KMI++N+RLV+SIAK YQ   M   DL+QEG  G
Sbjct: 62  EEWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLG 121

Query: 386 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 445
           L RG EKFD SKG+KFSTYA+WWI+QA+ ++++ QSRTIRLP H+ E   ++K+ +++L 
Sbjct: 122 LERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELS 181

Query: 446 SENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETS 505
            + GR     E+AE   L ++++   +   + P SL+ K+G +Q+ +  E++ D ++  S
Sbjct: 182 QQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSPS 241

Query: 506 EDLLIKQFMKQDL 518
            D + ++ +++DL
Sbjct: 242 -DYVEQESLRRDL 253

[Close]

BLAST of Moc07g22920 vs. ExPASy TrEMBL
Match: A0A6J1DSR7 (RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 SV=1)

HSP 1 Score: 971.8 bits (2511), Expect = 1.1e-279
Identity = 519/519 (100.00%), Postives = 519/519 (100.00%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120
           LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180
           IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKR 240
           DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKR
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKR 240

Query: 241 TRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG 300
           TRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG
Sbjct: 241 TRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG 300

Query: 301 IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLV 360
           IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLV
Sbjct: 301 IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLV 360

Query: 361 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 420
           ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 361 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 420

Query: 421 RTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSL 480
           RTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSL
Sbjct: 421 RTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSL 480

Query: 481 EQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           EQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK
Sbjct: 481 EQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 519

[Close]

BLAST of Moc07g22920 vs. ExPASy TrEMBL
Match: A0A0A0K917 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1)

HSP 1 Score: 841.3 bits (2172), Expect = 2.3e-240
Identity = 456/520 (87.69%), Postives = 475/520 (91.35%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T ANYSHHH+FLPTA SS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120
           LSAASP TSTGTATT +V+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEA+
Sbjct: 61  LSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAS 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQSS K DALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240
           DIIG PVGVN RP EGDAL+  T ESD  +PT+EELELLQDELS +I V+S+RQTER+A+
Sbjct: 181 DIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300
           RTRAAEK  TSV+S KSGSSSRKKRNSVQEVDYSDPLRYLRATT+ SRLLTATEELELSE
Sbjct: 241 RTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           LEQKIGINQNLKPSEVISDPEAET ED+LIKQFMKQDLEK
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEK 513

[Close]

BLAST of Moc07g22920 vs. ExPASy TrEMBL
Match: A0A5A7T955 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00600 PE=3 SV=1)

HSP 1 Score: 840.1 bits (2169), Expect = 5.0e-240
Identity = 456/520 (87.69%), Postives = 474/520 (91.15%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T AN SHHH+FLPTA SS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120
           LSAASP TSTGTATT NV+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQ S K DALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240
           DIIG PVGVN RP EGDAL+  T ESD  +PT+EELELLQDELS +I V+S+RQTER+A+
Sbjct: 181 DIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300
           RTRAAEK  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Sbjct: 241 RTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           LEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEK
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEK 513

[Close]

BLAST of Moc07g22920 vs. ExPASy TrEMBL
Match: A0A1S3CD00 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 837.8 bits (2163), Expect = 2.5e-239
Identity = 454/520 (87.31%), Postives = 474/520 (91.15%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T AN SHHH+F+PTA SS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120
           LSAASP TSTGTATT NV+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQ S K DALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240
           DIIG PVGVN RP EGDAL+  T ESD  +PT++ELELLQDELS +I V+S+RQTER+A+
Sbjct: 181 DIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300
           RTRAAEK  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Sbjct: 241 RTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           LEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEK
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEK 513

[Close]

BLAST of Moc07g22920 vs. ExPASy TrEMBL
Match: A0A6J1HL45 (RNA polymerase sigma factor sigB OS=Cucurbita moschata OX=3662 GN=LOC111464542 PE=3 SV=1)

HSP 1 Score: 832.8 bits (2150), Expect = 8.0e-238
Identity = 450/520 (86.54%), Postives = 477/520 (91.73%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKT A T+T T   SHHH FLPTANS+  K RDPHSLRTQCI
Sbjct: 98  MSCLLPQFKCHPETFSIQFKTPASTITPTPTSSHHHTFLPTANSTYFKFRDPHSLRTQCI 157

Query: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120
           LSAASP T TGTATTFNV+RLKLPP D NTDS+SAERLRSYL AVESS ASTLLTSEEAT
Sbjct: 158 LSAASPPTLTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 217

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180
           IAAAAAEAV LAKAAVK A DAALLVNNSNSS++  KSQSSS+S+ALHFKWDQFMESERA
Sbjct: 218 IAAAAAEAVALAKAAVKAANDAALLVNNSNSSRSVTKSQSSSRSNALHFKWDQFMESERA 277

Query: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240
           DIIG PVGVNNRP EGDAL+  TAESD  +PT+EELELL+DE S +IAVRS RQTER+A+
Sbjct: 278 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKAR 337

Query: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300
           RTRA+EK ATSVVS+KSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Sbjct: 338 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 397

Query: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERL+EEL  RYG EPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL
Sbjct: 398 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 457

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 458 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 517

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DEEIA AAGLSMKRLA VLMTPKAPRS
Sbjct: 518 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRS 577

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           LEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEK
Sbjct: 578 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEK 617

[Close]

BLAST of Moc07g22920 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 539.3 bits (1388), Expect = 3.5e-153
Identity = 320/533 (60.04%), Postives = 393/533 (73.73%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSL--RTQC 61
           SCLLPQFKC P++FSI F+T                      S C    +  S+  + QC
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT----------------------SFCAPKHNKGSVFFQPQC 62

Query: 62  ILSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSY---------LSAVESSFA 121
            +S  SP+  T   +  +V +L+LP  D ++DS+ ++R  +Y            +E+  +
Sbjct: 63  AVS-TSPALLT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALAS 122

Query: 122 STLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFK 181
            TLLTS+EA + AAAAEAV LA+AAVKVAKDA L  N++N++       +SS +D    K
Sbjct: 123 ETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLL-----TSSTADK-RSK 182

Query: 182 WDQFMESERADIIG-VPVGVNNRPAEGDALQHDTAES--DYTDPTTEELELLQDELS-NI 241
           WDQF E ERA I+G + V  N   ++         ES  D      EE+ELL+++ S ++
Sbjct: 183 WDQFTEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSL 242

Query: 242 AVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNS 301
           AVRS RQTER+A+R +  EK A+ + SVK+GSS +KKR   QEVD++DPLRYLR TTS+S
Sbjct: 243 AVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSS 302

Query: 302 RLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGT 361
           +LLT  EE ELS GIQDLLKLERLQ EL ER G++PTFAQWA+AAGV+Q++LR+R+++GT
Sbjct: 303 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 362

Query: 362 FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 421
            CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHW
Sbjct: 363 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 422

Query: 422 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKR 481
           WIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKR
Sbjct: 423 WIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKR 482

Query: 482 LAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           L AVL++PK PRSL+QKIG+NQNLKPSEVI+DPEA TSED+LIK+FM+QDL+K
Sbjct: 483 LMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDK 503

[Close]

BLAST of Moc07g22920 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 190.7 bits (483), Expect = 3.1e-48
Identity = 123/342 (35.96%), Postives = 183/342 (53.51%), Query Frame = 0


Query: 176 ESERADIIGVPVGVNNRPAEGDALQHDT---AESDYTDPTTEELELLQDELSNIAVRSRR 235
           ++E  D++ +     +   +   L  DT      +  D  +    +   E  NI VRS+R
Sbjct: 134 DAELCDVVALAQKALSASKQAALLVDDTEANPSDNIKDSLSTSSSMSLPEKGNI-VRSKR 193

Query: 236 QTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTAT 295
           Q ERRAK  RA +             +S KK+   Q  D  D L+         +LLTA 
Sbjct: 194 QLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQLLTAK 253

Query: 296 EELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKM 355
           EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++ G   ++K+
Sbjct: 254 EEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKL 313

Query: 356 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 415
           I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+WWI+Q++
Sbjct: 314 ITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSI 373

Query: 416 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLM 475
           RKS+   SRTIRLP ++     +V EARK    E    P  EE+A   G+S ++L  +L 
Sbjct: 374 RKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLY 433

Query: 476 TPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMK 515
             + P S++Q I  +Q+    E+  D   ET    + KQ M+
Sbjct: 434 NTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMR 473

[Close]

BLAST of Moc07g22920 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-38
Identity = 97/313 (30.99%), Postives = 182/313 (58.15%), Query Frame = 0


Query: 212 TTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSS------RKKRN 271
           TTE ++   ++   + V SRR+ +++A+R         S V+ ++G  S      R   N
Sbjct: 206 TTELVDTTPNQ--QVFVSSRRKVKKKARR---------SSVTAENGDQSSLPIGLRTTWN 265

Query: 272 SVQEVDYSDPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFA 331
           ++       P +Y +     SR      E E+S G++ +  +ER++ +L E  GK  + +
Sbjct: 266 NIDVPRVRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLS 325

Query: 332 QWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 391
            WAAAAG+N++ L + L+YG +C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+
Sbjct: 326 CWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGV 385

Query: 392 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 451
           ++GAE+FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L +
Sbjct: 386 LQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKT 445

Query: 452 ENG-RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETS 511
            +G ++  DEEIA+  G S+K++ A     K   S+++K+G     K  E   D   E+ 
Sbjct: 446 SHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESP 502

Query: 512 EDLLIKQFMKQDL 518
           E+ +++Q  ++D+
Sbjct: 506 EEAVMRQSARRDI 502

[Close]

BLAST of Moc07g22920 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 143.7 bits (361), Expect = 4.3e-34
Identity = 83/236 (35.17%), Postives = 136/236 (57.63%), Query Frame = 0


Query: 284 SNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLN 343
           S S  L+  EE++L   +++  KLE L   + E    E      A+  G  +R+  + L 
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 177

Query: 344 YGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 403
                ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY
Sbjct: 178 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 237

Query: 404 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLS 463
            +WWIKQA+ ++++ +SR ++LP  M E T +V EA   L  +  R P  EEIAE   L+
Sbjct: 238 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 297

Query: 464 MKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEK 520
           +  +   +   ++P SL++    N  +   E++  P+    E+++ ++ MK ++E+
Sbjct: 298 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQ 350

[Close]

BLAST of Moc07g22920 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 127.5 bits (319), Expect = 3.2e-29
Identity = 116/392 (29.59%), Postives = 192/392 (48.98%), Query Frame = 0


Query: 151 SSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQHDTAESDYTD 210
           S+K+G  ++ +S         ++  +S +A    V V    +P   +    +  E  Y D
Sbjct: 44  STKSGITAKKASNYSPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDD 103

Query: 211 P-----TTEELELLQDELS----NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSR 270
                 + E + LLQ  +     N++      +E   K T   +KI    V   SG S+R
Sbjct: 104 DDLISHSVEAILLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIP---VITCSGISAR 163

Query: 271 KKR------------NSVQEVDYSDPLR-YLRATTSNSRLLTATEELELSEGIQDLLKLE 330
           ++R             +V +V     +R Y++   S   +L+  E + LS+ I+  L+L+
Sbjct: 164 QRRIGAKKKTNMTHVKAVSDVSSGKQVRGYVKGVISED-VLSHVEVVRLSKKIKSGLRLD 223

Query: 331 RLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQ 390
             +  L++R G EP+  Q A +  +++  L+  L      ++K+  SN+RLV+SIA+ Y 
Sbjct: 224 DHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYD 283

Query: 391 GAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 450
             G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V ++L D SRT+RLP H
Sbjct: 284 NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 343

Query: 451 MVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQ 510
           + E    ++ A+ +L  E G  P  + IAE+  +S K++           SL++    + 
Sbjct: 344 LHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSL 403

Query: 511 NLKPSEV----ISDPEAETS-----EDLLIKQ 512
           N  P E     I+D   E +     +DL +K+
Sbjct: 404 NGLPGETHHSYIADTRLENNPWHGYDDLALKE 430

The following BLAST results are available for this feature:

BLAST of Moc07g22920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155781.1	2.3e-279	100.00	RNA polymerase sigma factor sigB [Momordica charantia]	[more]
XP_038875580.1	3.8e-242	88.29	RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida]	[more]
XP_004154029.1	4.7e-240	87.69	RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical prot...	[more]
KAA0039984.1	1.0e-239	87.69	RNA polymerase sigma factor sigB isoform X1 [Cucumis melo var. makuwa] >TYK24518...	[more]
XP_008460092.1	5.1e-239	87.31	PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo]	[more]

BLAST of Moc07g22920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22056	5.0e-152	60.04	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	1.8e-53	42.70	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	3.4e-52	39.18	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
Q9LD95	4.3e-47	35.96	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q31ME3	4.8e-46	40.71	RNA polymerase sigma factor SigA2 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]

BLAST of Moc07g22920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSR7	1.1e-279	100.00	RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 ...	[more]
A0A0A0K917	2.3e-240	87.69	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1	[more]
A0A5A7T955	5.0e-240	87.69	RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CD00	2.5e-239	87.31	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A6J1HL45	8.0e-238	86.54	RNA polymerase sigma factor sigB OS=Cucurbita moschata OX=3662 GN=LOC111464542 P...	[more]

BLAST of Moc07g22920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08540.1	3.5e-153	60.04	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	3.1e-48	35.96	RNApolymerase sigma-subunit F	[more]
AT3G53920.1	1.3e-38	30.99	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	4.3e-34	35.17	sigma factor 4	[more]
AT1G64860.1	3.2e-29	29.59	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 297..317
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 95..424 e-value: 7.1E-40 score: 139.5
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 46..519
None	No IPR available	PANTHER	PTHR30603:SF57	RNA POLYMERASE SIGMA FACTOR SIGB	coord: 46..519
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 431..506 e-value: 8.7E-17 score: 61.0
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 425..502 e-value: 9.1E-15 score: 56.8
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 352..421 e-value: 1.3E-18 score: 66.5
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 350..460 e-value: 3.6E-16 score: 57.2
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 420..471
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 273..422

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g22920.1	Moc07g22920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity