Moc07g22340 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g22340
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr7: 16363498 .. 16364195 (+)
RNA-Seq Expression	Moc07g22340
Synteny	Moc07g22340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCTCAGAATTACTAGAAGAATGGAAGAACTTCAAGCTGACTTCCGAAGAGGAAGAAATAACGGTTGACATAGACTCTACGGCCATTGAAGATACTGGGAAGAGGTTGGATCTAAGCCTGGTGGGCAAATTGTTCTTTAAGAGATCCATCTTTTGTTATGTTCTGAAGAACACGTTGCGGATCGCTTGGAGACTAGACTTGAATGCTTTTATTGTGGAGAATGCAGGATGAAATCTCTTTCTGTTCTATTTCAAAAGAGGAAAGGACAGAAATAGAATCTTGAATTCTGGACCTTGGACTTTCGAAAAGGCAATACTTGTGTTAACTCTGCCTATTCCAATGATGTATCCATTTGGGTTCATTTTTTTGATCTACCTTTGGAATGTATGAACAGGTTAATGGCTAGCGAATTGGGGAATGCCCTTGGATTTTTTGAAGATGTTGAACATGATGAAGAACGCTATTGCTGGGGCTCAAGCTTGGGAGTTCGAGTTAATTTAGACATCTCCAAGCCTTTAAGGAGAGGTCTAAAACTGAACATAGCAGGTCCAATGGGAGGAAATTGGATCCCAATCCAATACGAACGACTACCCGACTTTTGCTTCTGTTGTGGTAAGTTGGATCATGTGCTTAAGGACTGTGACGATTGTGGAGATGACCCTTCTATCACAAAGAGACATCAATATGGGTAG

mRNA sequence

ATGGCAGCCTCAGAATTACTAGAAGAATGGAAGAACTTCAAGCTGACTTCCGAAGAGGAAGAAATAACGGTTGACATAGACTCTACGGCCATTGAAGATACTGGGAAGAGGTTAATGGCTAGCGAATTGGGGAATGCCCTTGGATTTTTTGAAGATGTTGAACATGATGAAGAACGCTATTGCTGGGGCTCAAGCTTGGGAGTTCGAGTTAATTTAGACATCTCCAAGCCTTTAAGGAGAGGTCTAAAACTGAACATAGCAGGTCCAATGGGAGGAAATTGGATCCCAATCCAATACGAACGACTACCCGACTTTTGCTTCTGTTGTGGTAAGTTGGATCATGTGCTTAAGGACTGTGACGATTGTGGAGATGACCCTTCTATCACAAAGAGACATCAATATGGGTAG

Coding sequence (CDS)

ATGGCAGCCTCAGAATTACTAGAAGAATGGAAGAACTTCAAGCTGACTTCCGAAGAGGAAGAAATAACGGTTGACATAGACTCTACGGCCATTGAAGATACTGGGAAGAGGTTAATGGCTAGCGAATTGGGGAATGCCCTTGGATTTTTTGAAGATGTTGAACATGATGAAGAACGCTATTGCTGGGGCTCAAGCTTGGGAGTTCGAGTTAATTTAGACATCTCCAAGCCTTTAAGGAGAGGTCTAAAACTGAACATAGCAGGTCCAATGGGAGGAAATTGGATCCCAATCCAATACGAACGACTACCCGACTTTTGCTTCTGTTGTGGTAAGTTGGATCATGTGCTTAAGGACTGTGACGATTGTGGAGATGACCCTTCTATCACAAAGAGACATCAATATGGGTAG

Protein sequence

MAASELLEEWKNFKLTSEEEEITVDIDSTAIEDTGKRLMASELGNALGFFEDVEHDEERYCWGSSLGVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDCDDCGDDPSITKRHQYG

Homology

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BLAST of Moc07g22340 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 3.9e-34
Identity = 92/241 (38.17%), Postives = 109/241 (45.23%), Query Frame = 0


Query: 1   MAASELLEEWKNFKLTSEEEEITVDIDSTAIEDTGK------------------------ 60
           MAAS LLEEWKNFKLTSEE++I VDIDS+A+E TGK                        
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120

Query: 121 ----------------------RLMASELGNALGFFEDVEHDEERYCWGSSLGVRVNLDI 136
                                 + MA+ LGNA+G FEDVE +   +CWGS L VRV  D+
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180

[Close]

BLAST of Moc07g22340 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-24
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 37  RLMASELGNALGFFEDVEHDEERYCWGSSLGVRVNLDISKPLRRGLKLNIAGPMGGNWIP 96
           + MA  LGNA+G F DV+ +E+ + WG+SL +RV +DI+KPLRRG+K+NI GPMGG WIP
Sbjct: 142 KTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIP 201

Query: 97  IQYERLPDFCFCCGKLDHVLKDCD 121
           IQYERLPDFC+ CG + H   DCD
Sbjct: 202 IQYERLPDFCYFCGVIGHSSHDCD 225

[Close]

BLAST of Moc07g22340 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-23
Identity = 81/241 (33.61%), Postives = 95/241 (39.42%), Query Frame = 0


Query: 1   MAASELLEEWKNFKLTSEEEEITVDIDSTAIEDTGKRL---------------------- 60
           MA  +LLEEWKNFKLTSEEEE  +D+D++A   TG RL                      
Sbjct: 1   MATFDLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNT 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  MRTAWKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPS 120

Query: 121 ------------------------MASELGNALGFFEDVEHDEERYCWGSSLGVRVNLDI 136
                                   MA  LGNALG FE+ + D+    WGS+L VRV LDI
Sbjct: 121 ELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDI 180

[Close]

BLAST of Moc07g22340 vs. NCBI nr
Match: XP_038894015.1 (uncharacterized protein LOC120082783 [Benincasa hispida])

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 39  MASELGNALGFFEDVEHDEERYCWGSSLGVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQ 98
           MA+ LGN++G F +V+ DE   CW  SL +R+ +DI+ PL  GLK         +WI I+
Sbjct: 1   MATSLGNSIGTFINVDFDENDNCWKPSLCIRITIDITNPLGHGLKFGYENSSSKDWIQIK 60

Query: 99  YERLPDFCFCCGKLDHVLKDC 120
           YER+PDFC+ C  + H+LK+C
Sbjct: 61  YERVPDFCYDCDMIGHILKNC 81

[Close]

BLAST of Moc07g22340 vs. NCBI nr
Match: XP_028117212.1 (uncharacterized protein LOC114314884 [Camellia sinensis])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 43  LGNALGFFEDVEHDEERYCWGSSLGVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERL 102
           LGN LG F D+E+ +    WG +L +R+ ++I KPLRRGLKL + G     WI +QYERL
Sbjct: 146 LGNTLGKFVDMEYGDGGIAWGRALHIRIEINIDKPLRRGLKLALGG-QEPVWITLQYERL 205

Query: 103 PDFCFCCGKLDHVLKDC 120
           P+FCF CG L H + DC
Sbjct: 206 PNFCFHCGLLGHSVHDC 221

[Close]

BLAST of Moc07g22340 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.9e-34
Identity = 92/241 (38.17%), Postives = 109/241 (45.23%), Query Frame = 0


Query: 1   MAASELLEEWKNFKLTSEEEEITVDIDSTAIEDTGK------------------------ 60
           MAAS LLEEWKNFKLTSEE++I VDIDS+A+E TGK                        
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120

Query: 121 ----------------------RLMASELGNALGFFEDVEHDEERYCWGSSLGVRVNLDI 136
                                 + MA+ LGNA+G FEDVE +   +CWGS L VRV  D+
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180

[Close]

BLAST of Moc07g22340 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 37  RLMASELGNALGFFEDVEHDEERYCWGSSLGVRVNLDISKPLRRGLKLNIAGPMGGNWIP 96
           + MA  LGNA+G F DV+ +E+ + WG+SL +RV +DI+KPLRRG+K+NI GPMGG WIP
Sbjct: 142 KTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIP 201

Query: 97  IQYERLPDFCFCCGKLDHVLKDCD 121
           IQYERLPDFC+ CG + H   DCD
Sbjct: 202 IQYERLPDFCYFCGVIGHSSHDCD 225

[Close]

BLAST of Moc07g22340 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 81/241 (33.61%), Postives = 95/241 (39.42%), Query Frame = 0


Query: 1   MAASELLEEWKNFKLTSEEEEITVDIDSTAIEDTGKRL---------------------- 60
           MA  +LLEEWKNFKLTSEEEE  +D+D++A   TG RL                      
Sbjct: 1   MATFDLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNT 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  MRTAWKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPS 120

Query: 121 ------------------------MASELGNALGFFEDVEHDEERYCWGSSLGVRVNLDI 136
                                   MA  LGNALG FE+ + D+    WGS+L VRV LDI
Sbjct: 121 ELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDI 180

[Close]

BLAST of Moc07g22340 vs. ExPASy TrEMBL
Match: A0A803LIU6 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.5e-18
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 4   SELLEEWKNFKLTSEEEEI-------TVDIDSTA------------IEDT----GKRLMA 63
           SELL++W+ FKLT EEE I       ++D DS              +ED      K  +A
Sbjct: 142 SELLKDWEKFKLTEEEEAIIGGDFEDSIDDDSDTQNFLDSGWEIIHLEDVPFNRRKASVA 201

Query: 64  SELGNALGFFEDVEHD-EERYCWGSSLGVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQY 123
           SE+G +LG F  +E+D  +   W     ++V LDI KPLRRGL++   GP    WI I+Y
Sbjct: 202 SEVGESLGGF--LEYDASDPLGWEKVTRIKVLLDIEKPLRRGLRIT-TGPSSSKWIGIKY 261

Query: 124 ERLPDFCFCCGKLDHVLKDC----DDCGDDPSITKRHQYG 136
           ERL D+CF CG+LDH  +DC    ++ G +  +   +QYG
Sbjct: 262 ERLVDYCFYCGRLDHTKRDCQFLNENVGTEEEVV--YQYG 296

[Close]

BLAST of Moc07g22340 vs. ExPASy TrEMBL
Match: A0A2P5F2Z2 (Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_119730 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.5e-15
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 37  RLMASELGNALGFFEDVEHDEERYCWGSSLGVRVNLDISKPLRRGLKLNIAGPMGGNWIP 96
           + +A  LGN  G F +VE D+   C G  L VRV +DI+KPLRRG K+ I       W+ 
Sbjct: 11  KAVAKLLGNQAGRFVEVEKDDNGSCLGRFLNVRVIVDINKPLRRGAKVRIGSGGHTIWVD 70

Query: 97  IQYERLPDFCFCCGKLDHVLKDC 120
            +Y RLPDFCF CGK+ H + DC
Sbjct: 71  FRYVRLPDFCFWCGKIGHTMADC 93

The following BLAST results are available for this feature:

BLAST of Moc07g22340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132681.1	3.9e-34	38.17	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022156185.1	2.2e-24	61.90	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_022158377.1	3.1e-23	33.61	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_038894015.1	1.8e-15	45.68	uncharacterized protein LOC120082783 [Benincasa hispida]	[more]
XP_028117212.1	1.2e-14	51.95	uncharacterized protein LOC114314884 [Camellia sinensis]	[more]

BLAST of Moc07g22340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g22340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSZ1	1.9e-34	38.17	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1DU55	1.0e-24	61.90	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DX30	1.5e-23	33.61	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A803LIU6	9.5e-18	39.38	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A2P5F2Z2	7.5e-15	48.19	Zinc knuckle CX2CX4HX4C OS=Trema orientale OX=63057 GN=TorRG33x02_119730 PE=4 SV...	[more]

BLAST of Moc07g22340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 72..120 e-value: 5.1E-12 score: 45.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g22340.1	Moc07g22340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding