Moc07g22070 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g22070
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCOP9 signalosome complex subunit 1-like
Locationchr7: 16212900 .. 16213555 (-)
RNA-Seq ExpressionMoc07g22070
SyntenyMoc07g22070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACTGGAGGCGCTTCGGTTGGCCTACGACGAGGTTAAATTGGGACGTGAAGTGGAGCTGTTCACCAAGATTGTTGAGATGATTTCAGGGAGATTGGGCCCTAATTACGAGATCGATGAAGATTGGTGCCGTTCGGTGAATCAATTTGTGGAGGAGAAGGAGAATTTTGCGAAGAAATAGGAGGTATGAATTTGTGAATCAGTTAATCGAAGTATTTTCTGTTCTTGATCGAAATCGAAATCGAAATGTTCCTAATTAGGAAGATCACCCGATTCATACGCGTTCTACAAAGAGAGTAAGAAATTCATACATCACCATTGGAGATTTCTATTTCACCCACGGCGAATTTCCAAAAGCTCTTGAATATTATTGGAGATCCCAATTTTTCTGCACCAGCCCAAACACGAACGCTGAGACATTTTTGCATATCATTCACACCTCGCTTGAGACGGGCCACTTATCTCTGGTCATAGCACTCGCTGAAAAGGCTTTAGAAATATGTAAGTCTCTTGACAATGTCGGTATTGCACAAGTGCGCTGCACTGCGGGGATTGGCTTTCTTGAAGACCCAACGCTTTAGAGATGCTGCTCTTCAGGTTCGTCTGTTTGCCATATCTGATTTCTTGCTCATTGCTTTCATGGACTTTGAATGA

mRNA sequence

ATGCAACTGGAGGCGCTTCGGTTGGCCTACGACGAGGTTAAATTGGGACGTGAAGTGGAGCTGTTCACCAAGATTGTTGAGATGATTTCAGGGAGATTGGGCCCTAATTACGAGATCGATGAAGATTGGTGCCGTTCGTGCGCTGCACTGCGGGGATTGGCTTTCTTGAAGACCCAACGCTTTAGAGATGCTGCTCTTCAGGTTCGTCTGTTTGCCATATCTGATTTCTTGCTCATTGCTTTCATGGACTTTGAATGA

Coding sequence (CDS)

ATGCAACTGGAGGCGCTTCGGTTGGCCTACGACGAGGTTAAATTGGGACGTGAAGTGGAGCTGTTCACCAAGATTGTTGAGATGATTTCAGGGAGATTGGGCCCTAATTACGAGATCGATGAAGATTGGTGCCGTTCGTGCGCTGCACTGCGGGGATTGGCTTTCTTGAAGACCCAACGCTTTAGAGATGCTGCTCTTCAGGTTCGTCTGTTTGCCATATCTGATTTCTTGCTCATTGCTTTCATGGACTTTGAATGA

Protein sequence

MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRSCAALRGLAFLKTQRFRDAALQVRLFAISDFLLIAFMDFE
Homology
BLAST of Moc07g22070 vs. NCBI nr
Match: XP_023547756.1 (COP9 signalosome complex subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRS 47
           MQLEALR+AYD  K G++V +F KIV  I GRLGPNY++DE+WC S
Sbjct: 78  MQLEALRIAYDIAKKGKDVNVFIKIVRKIDGRLGPNYDMDENWCNS 123

BLAST of Moc07g22070 vs. NCBI nr
Match: XP_023005986.1 (COP9 signalosome complex subunit 1-like [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRS 47
           MQLEALR+AYD  K G++V +F KIV  I GRLGPNY++DE+WC S
Sbjct: 78  MQLEALRIAYDIAKKGKDVNVFIKIVRKIDGRLGPNYDMDENWCNS 123

BLAST of Moc07g22070 vs. NCBI nr
Match: KAG7013361.1 (COP9 signalosome complex subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRS 47
           MQLEALR+AYD  K G +V +F KIV  I GRLGPNY++DE+WC S
Sbjct: 78  MQLEALRIAYDIAKKGNDVNVFIKIVRKIDGRLGPNYDMDENWCNS 123

BLAST of Moc07g22070 vs. NCBI nr
Match: XP_022958876.1 (COP9 signalosome complex subunit 1-like [Cucurbita moschata])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRS 47
           MQLEALR+AYD  K G +V +F KIV  I GRLGPNY++DE+WC S
Sbjct: 78  MQLEALRIAYDIAKKGNDVNVFIKIVRKIDGRLGPNYDMDENWCNS 123

BLAST of Moc07g22070 vs. NCBI nr
Match: KAG6574781.1 (COP9 signalosome complex subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRS 47
           MQLEALR+AYD  K G +V +F KIV  I GRLGPNY++DE+WC S
Sbjct: 78  MQLEALRIAYDIAKKGNDVNVFIKIVRKIDGRLGPNYDMDENWCNS 123

BLAST of Moc07g22070 vs. ExPASy Swiss-Prot
Match: P45432 (COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CSN1 PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-06
Identity = 28/84 (33.33%), Postives = 43/84 (51.19%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRSCAALRGLAFLKTQR 60
           +Q +ALR+AYDE+K G   +LF ++V  I  RLG  Y +D  WC    A+   A  K  +
Sbjct: 65  LQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCE---AVDRRAEQKKVK 124

Query: 61  FRDAALQVRLFAISDFLLIAFMDF 85
             +     R   I + + + + DF
Sbjct: 125 LENELSSYRTNLIKESIRMGYNDF 145

BLAST of Moc07g22070 vs. ExPASy TrEMBL
Match: A0A6J1KWI7 (COP9 signalosome complex subunit 1-like OS=Cucurbita maxima OX=3661 GN=LOC111498865 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-09
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRS 47
           MQLEALR+AYD  K G++V +F KIV  I GRLGPNY++DE+WC S
Sbjct: 78  MQLEALRIAYDIAKKGKDVNVFIKIVRKIDGRLGPNYDMDENWCNS 123

BLAST of Moc07g22070 vs. ExPASy TrEMBL
Match: A0A6J1H3C9 (COP9 signalosome complex subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111460031 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRS 47
           MQLEALR+AYD  K G +V +F KIV  I GRLGPNY++DE+WC S
Sbjct: 78  MQLEALRIAYDIAKKGNDVNVFIKIVRKIDGRLGPNYDMDENWCNS 123

BLAST of Moc07g22070 vs. ExPASy TrEMBL
Match: A0A067HDM6 (PCI domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g013559mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRS 47
           MQLEALR+AYDE+K G   +LF ++V+ I GRLGPNY +DE WC S
Sbjct: 65  MQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDS 110

BLAST of Moc07g22070 vs. ExPASy TrEMBL
Match: V4U862 (PCI domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10020177mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRS 47
           MQLEALR+AYDE+K G   +LF ++V+ I GRLGPNY +DE WC S
Sbjct: 65  MQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDS 110

BLAST of Moc07g22070 vs. ExPASy TrEMBL
Match: A0A2H5NPV4 (PCI domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_064260 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRS 47
           MQLEALR+AYDE+K G   +LF ++V+ I GRLGPNY +DE WC S
Sbjct: 65  MQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDS 110

BLAST of Moc07g22070 vs. TAIR 10
Match: AT3G61140.1 (26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain )

HSP 1 Score: 51.2 bits (121), Expect = 4.7e-07
Identity = 28/84 (33.33%), Postives = 43/84 (51.19%), Query Frame = 0

Query: 1   MQLEALRLAYDEVKLGREVELFTKIVEMISGRLGPNYEIDEDWCRSCAALRGLAFLKTQR 60
           +Q +ALR+AYDE+K G   +LF ++V  I  RLG  Y +D  WC    A+   A  K  +
Sbjct: 65  LQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCE---AVDRRAEQKKVK 124

Query: 61  FRDAALQVRLFAISDFLLIAFMDF 85
             +     R   I + + + + DF
Sbjct: 125 LENELSSYRTNLIKESIRMGYNDF 145

BLAST of Moc07g22070 vs. TAIR 10
Match: AT3G12850.1 (COP9 signalosome complex-related / CSN complex-related )

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 1  MQLEALRLAYDEVK---LGREVELFTKIVEMISGRLGPNYEIDEDW 44
          ++LEALRLAYD ++   +  ++ LFT I E I GRLG  Y +DE W
Sbjct: 45 LELEALRLAYDLIRNDGIVCDMRLFTVIAEKIQGRLGEGYLLDEKW 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023547756.11.4e-0865.22COP9 signalosome complex subunit 1-like [Cucurbita pepo subsp. pepo][more]
XP_023005986.11.4e-0865.22COP9 signalosome complex subunit 1-like [Cucurbita maxima][more]
KAG7013361.12.3e-0865.22COP9 signalosome complex subunit 1, partial [Cucurbita argyrosperma subsp. argyr... [more]
XP_022958876.12.3e-0865.22COP9 signalosome complex subunit 1-like [Cucurbita moschata][more]
KAG6574781.12.3e-0865.22COP9 signalosome complex subunit 1, partial [Cucurbita argyrosperma subsp. soror... [more]
Match NameE-valueIdentityDescription
P454326.6e-0633.33COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CSN1 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A6J1KWI76.6e-0965.22COP9 signalosome complex subunit 1-like OS=Cucurbita maxima OX=3661 GN=LOC111498... [more]
A0A6J1H3C91.1e-0865.22COP9 signalosome complex subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A067HDM61.9e-0863.04PCI domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g013559mg PE=... [more]
V4U8621.9e-0863.04PCI domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10020177mg... [more]
A0A2H5NPV41.9e-0863.04PCI domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_064260 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G61140.14.7e-0733.3326S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain [more]
AT3G12850.11.5e-0550.00COP9 signalosome complex-related / CSN complex-related [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.25.40.570coord: 1..49
e-value: 4.7E-7
score: 31.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g22070.1Moc07g22070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus