Moc07g21020 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g21020
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Locationchr7: 15306378 .. 15311499 (-)
RNA-Seq ExpressionMoc07g21020
SyntenyMoc07g21020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTCACTCTTGTCGCACATGCCTGGCACCAGCGCCCGTATGCCTACATACCACGCCTTGCCTTCCCGCATTAGTGCACGCCACTACTGCTCATCCACGCGTGCCACCTACCATGCCAGCCCTTGCCACCTTACCCCATGTGTGCGTCCACACCATGCCACCTGCACCATGCCGTCGTTGCTCCATGGGCGCCACTCCCTTTGGTGTCAAATTGGACGTTGCTTGCCGCCCACCTATCTCTTTTAAGGAAAAGATTTCCTTCTTTTTATTTTATTGGATTATTTTATTTTTAATCAAATTAGTTTAAAGAAAGAATTGCCTTACTTGATTAGGAAGTTGGCAATTTAAGTTAAACATCTTTCAATTATTTGTTTCCTTGTAAAGGTCTTGCATCCCTTATCAATAAAATTGTGAGTGTTTTTTTCCCTCAAATACAGAATCTCTTTGTGCGGTAGAACTTAGATTTTCGTGTTTTACCCTCGGAGCATGCTTTTTTTATTGGTCATCAAACTCGTGGGGTGTTTTCGACCTCAAGCATAGTGAGTATTCTATCTGCTCAAGGTAACGACTTCAAAGTTAATCCATCTAACCCTTAGGGTTGAAACCATCTATACGATTAAGTTCAAGTGGCTTGTGGCTCGAGTAGTCAATATGTTTGGGTTGCCGCGTATCAATTTTAGTCCTCATAGTTTCTAAATTAAAATTTTAAAGCTTTATACACCTATATCATTTTGCTAAATACATATATATTGAATTTTAGGTATATAACTTTTACTATTAATTGTTCAGTTGATATGAAAGGTCCCCTATATTGAATTTTTAGGTAAATAACCTTTCTAATGGTGTAACTTAGAAGCTGCCAACTAGTGTTTTGTTATCATATTGTTACTGTGTGGTGCAGGTTATGTTAGAGAATACGAAGAAACTCGAATATCGAAGTGGTGCATAGTCGGGAACGATTTTGACTATAGATTTTTTCAGAAAAGATGGACTAATTGTCTAGCCGAAAATGCTTAGCACAAGTGTACATGTCAAGTTTTAATAAAAATGGTAAGTAATTACCAATATAGTCCACCGGATTTGGTTTCTAGTCACTCAAGTACTACATATATTAATGTCTAATTTTATCTAGAGAAACAACAAGAGATTTTTTTTTAGACACAAAAGTCAAATAACAAAACGATTGAAAGACTCTAAGGAAAACTTTTATAGAGAACGGGCTCTAGGGAAGTGATTTCACCAACTAAACCTACAAGCAGACAAATTAAACATGCCAAGATTGAATATACAATTAATTTATAAGTCAAGAAATCATGAATCATAACTGTCTCTCCCAAAAAAATGGGGGAAATGAGAGAAACTAAAGTTGTTGTGTCAATTGACCGTCCCTAACTCAATCTCCATCATCACGAGCCTTTGAAAATAGTCTCCTCGCCCTCCTTGCTTCAACTCTCGAGCCAATCCTCTCAAAACTCCAATTGTCCAATGTAGGAATGTCAAAAGTCCTCAAAAAACGACGCACTAATCTTTTATTTATGAAAGGGCATTGCTATAGCGCCATGGCGATGTCTTAGAATTGTGACGGACACACAAAGTTCGTAACACCATGGCGCTACAAGACAGCACCGCTGTCACTATGGAAAAAGACCTCAGCTTAGTCTGTAGGCGCCATGGTGCTGCTGGATGGCGCCGTGGTGTTGCTTCTTTAGAATTTTGCTTCCAATTCTGACCTGCAGCCATCATGGCACTGTATGATGGCGCTGCGGGATTGATGTGGCTGAATTAAGCTCTCCTTTTTGCTCTAGTTTTCTTCTCAATTGATCATTAATGCTTCAACTCTTTCTAATGGCTCGATCCTGTAAAAACATCAGTTATGCAAGTAAATAAACCATAAATGACCGAAAATTGCTAAATAATTCCCACTTGAATGTCATGAGATGTGGTTTATAAAGTACACTATCAAATTGATATCTCTTTCATTTTATTGAATTATTGAAACGACCTAATTATCCAAGTTATTTAATGACTTAATGGGATGATAACGATGAATGTAAAATTTACTTTTCTATTGTATAAATAAAAACTAATATGATTTGTTAAAATGCTAAAAATATTCATAGCTAAAAAAGTAGATGAACACACGGCATGTTTAACGTGGTTCAGTTTCACAACCTACTCCACTAAACCACACCCAGAGATCTAAAATAGATTATCAAAAGATTAGTACACAATACATATTGTCTTATGCATGAATTTAAAAGAACTTCCTTATTTAATTTTATGCTGCAATCCCTTGCTCTAATCCCTTTGACGATCTACGTTCACAAGCTCCCCTTGTGTCAGATTCAGTGTATTCAACAATCGTTTATGAAACTCACCGTCTTTAATCGAAAACGTTCTCAATATATATAACCAAAAGAGAACAAATAATCCATTTTCGTTTTCATCAAAAAGGATCAAACAGTAAGTAAGACAAAAATGGATCAATCAATACGTGAGAAAAATATTGCTGGATCGATCAAACTGTCTTAACAATGTTTCAATATTTAAAGAGAAAAACCAATCATCGAAATATGGTAAAGATTCTATTAATCAGTCAAAATTAAGTCTAGCCAAATCAAAGGCAATGAGATAAAGAAAGCAATCAATCCCTCAAATTTCTCAATCAAATATATCACAAATTTCAAATAAATCCGTTAGACAAAATTACCAAAATGAATAATTAATGCTTGAGGTTCAAAAATAATGCCAAAAAAAATACTTTTTCAATCTCCCCCTTTGGCATTATTTTTGGCAAAAACACTAACTAAACAAAATCTACAAAATCTCCTATAAAGATAAGTAACATCAAATCAATAAAAATCTCTTCCTAAACAAAAGTCTCATCAACATTTCTTTGGATAAGTAACCTTGAGAATTTGTTGTGTAACTCCCTAAGAGTTCATCTCGTGTATCTCGCCTCTTTTTTTTTTTTTTTTTGGTTTACCTCAAGATCTTTGATAAAAGTCTTCTTTCTCGCATTTAGCTTCACTTTATGGCCATGCAACCCACTTTTTGAATGTAAGGCTCCCTTTCAATCTTGGCTTCCAATTGTAGTTCTTCATGAGAAGTTCAATTTTTGAATGTAAATGACCTCTCTTTCCATCTTTCGATTTTAAAGTCTAGTTTTCTATGGAAATGTTGTGTGACAGCCCACATTGTGAAGTGAAGGATCGAAAGATTTCCTGTGAGAGAAGTGAGATCTTCTCAATCTAAAGACGATCTTTGTTTCGAAGTTTTGTAAAATGCAATTACAACTTTGCCCCAATGTAGTATTGCTTGACTTTGCCCCAATTTGAAGATTTGTAAAAAAGACCTTGAAGCCTTTGAAACTGACGTTCGTGATCTATATTGATTGTCCCAGTCATTGAACTAAAGAATTGTCATGGTCTTAAACATTTCATTTTTTTCTTTATTTTTCCTTTTTCTTTTTCTTTACTTTTTTCTTTTATTATCCTTTTTTTTTGGCCAGACATACTCTTTTACAAGCAAAATAGGGTGCAATTACATATGAAAAAGTTGGTCATGCGTAGTCGCCTCTATTGTTGTTCCAAATTATGTCTTTGCTGCTGCTCCAGTAAAAATTGCTCTCAAACGAAACTCATCAAAGGAGACTGAGATCTTGAGACTATTTGGCAGGTCGCTAATTTCCCAATTCTTAAAATCATTATCCTCAGTCTTGGCATCACTTTTTATTCAAAAGAAAAGAACATACAAAGAATTAAGCTTTGAAGAACAAGACGAAAGAGAGTTGAGAAGAAAAATTTAGGTATGAATAAAGGCAGTAAAAAAAGGGAGATGTTTGTGCAACTACAAGTACCAATTCATGAAGCAGTAAATCATAAGAGCCCAATGTTATTTATTACCTTTAAAGTTCTCAAGGTAACACTAGGTGGATAATTTTGGACGTTTACCACACAATTAGATGTGTCGGGCTTAGCAAAGGGCTTTTATGGTAAGTAGACAAATATTGATATTCATCACAAATATTGTATGTGACGCTGGGCAAAAGATCTTTTGCAGTAAATGGTCAACTTTCAATGTTGACCATGTTTACCATATATCGGTAGGCTAGGCTCAAGGTAGATTAGGCTTAAAGCAGGCTAAGCTTAAGGTTTTACAGGGAGTGAGTAATTTTGGTTTCTCACCTAAATAGGCATGCTTGCCCCAATATGAAATTTGGTGGTTTGCTGGTTAGCACATGAGAACAATAGGAAGATCAAGATAAAATTGGTTTGAGTTACGGATTTAACCTGACAACAAAGTCCGGAAAAATGGTTGAGCTTTGAAAAAGATTATGACTCATTGAAGACATTCACATATTCATTTTTTTCCCATTTTTCATTCTTTTTTCACAACTTTTTTTTCACTTCTTTTTTCGTTTCCTCCAAGTGACTTACAATGGTTGGTTTATGATTCTTGCTAAGTTCTCCACTAACAAGAATTATAAGAGTAGACCATATAAAAATTATCATTGAAAAATTCCAAAATATGTAATTTTATTTTTATCGAGAGCATTTTCAAAGAAAACATTTTTGTTTTTTTTTTGTTCTTTTCTTTTTCAACCAATGATATGATATGAGTGATGCATGAACGAATGTATGACTTAAATTTTTTTTTTTTTAAAGAAAAGTAGCTCAACTTCCACACACTCACATTCTTTTTTACAAGTACTTAGCTAAATCATGGGTGACTAAAGCTTCATTGTCGTTTTAACACTAGCAAGCAATCTCAAAGATGACTTCAAATAAGAAATAGACTTTATTGATAGTGGGAAAATATTAAATTCACATTGGTTTCCATAGTCTCGTGAACTCATGATTCTAGTGCTTCATGTGTGGACCATCTTCCTTTGAAAACTTTAGCCATCATGCCTTCATTAGAACTTGCACTTTATGATTTAGTGAAGTACAGTTCTCAGTTGAATGACCTAAAGCTCCTCCATGGTAATCACAGCGGACTTGCGGGTTGTACCACTTTGGATAAGGTGGTCGTAATGGCTCTACGGGTACTGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACTCGGTATAAGATATTGGTATCAGTTTAA

mRNA sequence

ATGCTGTCACTCTTGTCGCACATGCCTGGCACCAGCGCCCGTATGCCTACATACCACGCCTTGCCTTCCCGCATTAGTGCACGCCACTACTGCTCATCCACGCGTGCCACCTACCATGCCAGCCCTTGCCACCTTACCCCATGTGTGCGTCCACACCATGCCACCTGCACCATGCCGTCGTTGCTCCATGGGCGCCACTCCCTTTGTGCTTCATGTGTGGACCATCTTCCTTTGAAAACTTTAGCCATCATGCCTTCATTAGAACTTGCACTTTATGATTTAGTGAAGTACAGTTCTCAGTTGAATGACCTAAAGCTCCTCCATGGTAATCACAGCGGACTTGCGGGTTGTACCACTTTGGATAAGGTGGTCGTAATGGCTCTACGGGTACTGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACTCGGTATAAGATATTGGTATCAGTTTAA

Coding sequence (CDS)

ATGCTGTCACTCTTGTCGCACATGCCTGGCACCAGCGCCCGTATGCCTACATACCACGCCTTGCCTTCCCGCATTAGTGCACGCCACTACTGCTCATCCACGCGTGCCACCTACCATGCCAGCCCTTGCCACCTTACCCCATGTGTGCGTCCACACCATGCCACCTGCACCATGCCGTCGTTGCTCCATGGGCGCCACTCCCTTTGTGCTTCATGTGTGGACCATCTTCCTTTGAAAACTTTAGCCATCATGCCTTCATTAGAACTTGCACTTTATGATTTAGTGAAGTACAGTTCTCAGTTGAATGACCTAAAGCTCCTCCATGGTAATCACAGCGGACTTGCGGGTTGTACCACTTTGGATAAGGTGGTCGTAATGGCTCTACGGGTACTGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACTCGGTATAAGATATTGGTATCAGTTTAA

Protein sequence

MLSLLSHMPGTSARMPTYHALPSRISARHYCSSTRATYHASPCHLTPCVRPHHATCTMPSLLHGRHSLCASCVDHLPLKTLAIMPSLELALYDLVKYSSQLNDLKLLHGNHSGLAGCTTLDKVVVMALRVLELIDYLEIIGITTRYKILVSV
Homology
[Close]
BLAST of Moc07g21020 vs. NCBI nr
Match: XP_022151686.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-25
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 0 

Query: 66  HSLCASCVDHLPLKTLAIMPSLELALYDLVKYSSQLNDLKLLHGNHSGLAGCTTLDKVVV 125
           H   ASC+ HLPLKTLAI+PSLELA+Y LVKYSSQLNDL+LL GNHSGLAG TT DKVV 
Sbjct: 16  HDSSASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVA 75

Query: 126 MALRVLELIDYLEIIGITTRYKILVS 152
           +ALRV ELIDYLEIIGITT+ +IL S
Sbjct: 76  IALRVRELIDYLEIIGITTQCRILGS 101

[Close]
BLAST of Moc07g21020 vs. NCBI nr
Match: XP_022144020.1 ((-)-germacrene D synthase-like [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-11
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 66  HSLCASCVDHLPLKTLAIMPSLELALYDLVKYSSQLNDLKLLHGNHSGLAGCTTLDKVV- 125
           H   AS VDHLPLKTLAIMPSLELALY LVKYSSQLNDL+LLHGNHS  A      +++ 
Sbjct: 16  HDSSASGVDHLPLKTLAIMPSLELALYALVKYSSQLNDLQLLHGNHSEHAVVPLWIRILG 75

Query: 126 ----VMALRVLELIDYLEIIGITTRYKILV 151
                + L V +  D  E++G++ + ++ V
Sbjct: 76  SNESSLTLVVSDYYDCQELVGLSWKAELPV 105

[Close]
BLAST of Moc07g21020 vs. ExPASy TrEMBL
Match: A0A6J1DFF2 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Momordica charantia OX=3673 GN=LOC111019602 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 0 

Query: 66  HSLCASCVDHLPLKTLAIMPSLELALYDLVKYSSQLNDLKLLHGNHSGLAGCTTLDKVVV 125
           H   ASC+ HLPLKTLAI+PSLELA+Y LVKYSSQLNDL+LL GNHSGLAG TT DKVV 
Sbjct: 16  HDSSASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVA 75

Query: 126 MALRVLELIDYLEIIGITTRYKILVS 152
           +ALRV ELIDYLEIIGITT+ +IL S
Sbjct: 76  IALRVRELIDYLEIIGITTQCRILGS 101

[Close]
BLAST of Moc07g21020 vs. ExPASy TrEMBL
Match: A0A6J1CQG9 ((-)-germacrene D synthase-like OS=Momordica charantia OX=3673 GN=LOC111013811 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 66  HSLCASCVDHLPLKTLAIMPSLELALYDLVKYSSQLNDLKLLHGNHSGLAGCTTLDKVV- 125
           H   AS VDHLPLKTLAIMPSLELALY LVKYSSQLNDL+LLHGNHS  A      +++ 
Sbjct: 16  HDSSASGVDHLPLKTLAIMPSLELALYALVKYSSQLNDLQLLHGNHSEHAVVPLWIRILG 75

Query: 126 ----VMALRVLELIDYLEIIGITTRYKILV 151
                + L V +  D  E++G++ + ++ V
Sbjct: 76  SNESSLTLVVSDYYDCQELVGLSWKAELPV 105

The following BLAST results are available for this feature:
BLAST of Moc07g21020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151686.12.2e-2577.91U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia][more]
XP_022144020.14.0e-1153.33(-)-germacrene D synthase-like [Momordica charantia][more]
BLAST of Moc07g21020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc07g21020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFF21.1e-2577.91U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Momordica charantia OX... [more]
A0A6J1CQG92.0e-1153.33(-)-germacrene D synthase-like OS=Momordica charantia OX=3673 GN=LOC111013811 PE... [more]
BLAST of Moc07g21020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g21020.1Moc07g21020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding