Moc07g20320 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g20320
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr7: 14615912 .. 14617122 (+)
RNA-Seq Expression	Moc07g20320
Synteny	Moc07g20320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAAGGATTAGATACAACTTATAAGGTATGGAAATCTTTGGAAGAGACTCCCCTAGCCATTACCAAAGAAAATGAAATTCATATCAGTGAAGTTCTACACTATTTGAGGAAGGGGAATCTATCACTTGATGAATACATCAAGAAATTCAAATCCTTGAGTGACAAGCTTGCTGCCATGAAGAAACCATTGGATGATTTAAGCAAGGTATTCACTCTAGCTCGTGGCTTGGGCAATCAATATAAAGAATTTCGGATTGCTATGTTGTCAAAGACTCCATTTCCAACATTCAACCAATTTATCTTAGCACTAAAAGCTCATAGCAACTACATGTCCATGAAATAAAAGAAGAAAAGATCTCTCCTCCTGAAGCAAATCAAGCCTATTACAGTCAAAAGGGAAGAGGCAGAAGTAGAGGAGGATATTACAACCCAAGAGGAACGGGAAGAGGAATTCATTTCAACACCAGACAAAATGCTCAAAACCAAAATCCATCCAACTTTGCTGCTTCTAAATCAAATATTTACTCTCCCACTCAAGGATCAAATCAAGGTAACAATATACAATGTCAAATCTGTGGAAAGACTAACCACTCGGCTTTGAAATGTTGGAATAGATTTGATCATGCATATCAATCTGAAGAAATTACAAAAGCACTAGCAGCGTTGACATTTTAAGATGGAATGGACTCAAATATGTATGCTGACTCTGGTGCCACCTCTTACGTTGTCAATGATTTAGGTAAAGTTTCTAAAACTCAGAGATATATAGGGAGGAAAAACTATATGTTGGTAATGGAAATGGATTAAATATTACTCACATTGTCATGGAAAACTAAAATCTAGCCATGGTGATTTAGAATTCAATAATGTGTTAGTTGTTGATAAGTCTTGAATTTTAGGAAAAAGTGTTTACAAATTGTGCATGTTTAGTGTCTTCTGAAATTAAATACGTGTGTTTCATGCATTGAATCCGGTATAAATGGGACTATTTCTTAGAAAAGACTTGTACACTTGGTTTTGGATAGATAGATGGAATTATGAGGAAATATATATGTTTTATAGGGGAAAAAGGAAGGAAAAAGTAGCAATGCACCTGCTACATATGACACAGAGGCCATCTTAAAGCTAGCAGCGATGCGTCTGGCGCATCGCCAACACTCCAGAAACTTCAACAATGCGCTTGGCGCATTCTCCACCTACAAATAA

mRNA sequence

ATGATCGAAGGATTAGATACAACTTATAAGGTATGGAAATCTTTGGAAGAGACTCCCCTAGCCATTACCAAAGAAAATGAAATTCATATCAGTGAAGTTCTACACTATTTGAGGAAGGGGAATCTATCACTTGATGAATACATCAAGAAATTCAAATCCTTGAGTGACAAGCTTGCTGCCATGAAGAAACCATTGGATGATTTAAGCAAGGGGAAAAAGGAAGGAAAAAGTAGCAATGCACCTGCTACATATGACACAGAGGCCATCTTAAAGCTAGCAGCGATGCGTCTGGCGCATCGCCAACACTCCAGAAACTTCAACAATGCGCTTGGCGCATTCTCCACCTACAAATAA

Coding sequence (CDS)

ATGATCGAAGGATTAGATACAACTTATAAGGTATGGAAATCTTTGGAAGAGACTCCCCTAGCCATTACCAAAGAAAATGAAATTCATATCAGTGAAGTTCTACACTATTTGAGGAAGGGGAATCTATCACTTGATGAATACATCAAGAAATTCAAATCCTTGAGTGACAAGCTTGCTGCCATGAAGAAACCATTGGATGATTTAAGCAAGGGGAAAAAGGAAGGAAAAAGTAGCAATGCACCTGCTACATATGACACAGAGGCCATCTTAAAGCTAGCAGCGATGCGTCTGGCGCATCGCCAACACTCCAGAAACTTCAACAATGCGCTTGGCGCATTCTCCACCTACAAATAA

Protein sequence

MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAAMKKPLDDLSKGKKEGKSSNAPATYDTEAILKLAAMRLAHRQHSRNFNNALGAFSTYK

Homology

[Close]

BLAST of Moc07g20320 vs. NCBI nr
Match: XP_022154021.1 (uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncharacterized protein LOC111021379 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-15
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1   MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAA 60
           ++EG +T  +VW SLEE  L +TKENEIH++E L  L+KG+LS+DEYI+KFK+L D+L A
Sbjct: 97  LLEGTETAKEVWHSLEELLLTMTKENEIHLNEALLTLKKGSLSMDEYIRKFKNLCDRLXA 156

Query: 61  MKKPLDDLSK 71
           MKKPLDDL+K
Sbjct: 157 MKKPLDDLTK 166

[Close]

BLAST of Moc07g20320 vs. NCBI nr
Match: KAA0051410.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-15
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAA 60
          M+EGL+  ++VW SLEE  L+ITKENEIHISE LH L+KG L L+EYIK F  LS+KLA 
Sbjct: 1  MLEGLENAHQVWNSLEEILLSITKENEIHISESLHALKKGLLILEEYIKCFMVLSEKLAV 60

Query: 61 MKKPLDDLS 70
          MKKPLDDL+
Sbjct: 61 MKKPLDDLT 69

[Close]

BLAST of Moc07g20320 vs. NCBI nr
Match: RVX03989.1 (hypothetical protein CK203_021715 [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 5.9e-10
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1   MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAA 60
           +++G  T+Y VW SLEE  L +TKE E+ ++  L  L+KG  SLDEY+++FK + D LAA
Sbjct: 38  LLDGTKTSYDVWNSLEEKLLPMTKEKEVQLTNKLQGLKKGTRSLDEYLREFKGICDALAA 97

Query: 61  MKKPLDDLSK 71
           ++KP+ DL K
Sbjct: 98  VRKPVSDLDK 107

[Close]

BLAST of Moc07g20320 vs. NCBI nr
Match: CAN74381.1 (hypothetical protein VITISV_007944 [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 6.5e-09
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 1   MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAA 60
           +++G +T Y VW SL E  L +TKE E+ ++  L  ++KG  SLDEY+++FK + D LAA
Sbjct: 97  LLDGTETAYDVWNSLGEKLLPMTKEKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAA 156

Query: 61  MKKPLDDLSK 71
           ++KP+ DL K
Sbjct: 157 VRKPVSDLDK 166

[Close]

BLAST of Moc07g20320 vs. NCBI nr
Match: RVW43526.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 6.5e-09
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 1   MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAA 60
           +++G +T Y VW SL E  L +TKE E+ ++  L  ++KG  SLDEY+++FK + D LAA
Sbjct: 142 LLDGTETAYDVWNSLGEKLLPMTKEKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAA 201

Query: 61  MKKPLDDLSK 71
           ++KP+ DL K
Sbjct: 202 VRKPVSDLDK 211

[Close]

BLAST of Moc07g20320 vs. ExPASy TrEMBL
Match: A0A6J1DMG5 (uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021379 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1   MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAA 60
           ++EG +T  +VW SLEE  L +TKENEIH++E L  L+KG+LS+DEYI+KFK+L D+L A
Sbjct: 97  LLEGTETAKEVWHSLEELLLTMTKENEIHLNEALLTLKKGSLSMDEYIRKFKNLCDRLXA 156

Query: 61  MKKPLDDLSK 71
           MKKPLDDL+K
Sbjct: 157 MKKPLDDLTK 166

[Close]

BLAST of Moc07g20320 vs. ExPASy TrEMBL
Match: A0A5A7U8B5 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001530 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAA 60
          M+EGL+  ++VW SLEE  L+ITKENEIHISE LH L+KG L L+EYIK F  LS+KLA 
Sbjct: 1  MLEGLENAHQVWNSLEEILLSITKENEIHISESLHALKKGLLILEEYIKCFMVLSEKLAV 60

Query: 61 MKKPLDDLS 70
          MKKPLDDL+
Sbjct: 61 MKKPLDDLT 69

[Close]

BLAST of Moc07g20320 vs. ExPASy TrEMBL
Match: A0A438J4W0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_021715 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-10
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1   MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAA 60
           +++G  T+Y VW SLEE  L +TKE E+ ++  L  L+KG  SLDEY+++FK + D LAA
Sbjct: 38  LLDGTKTSYDVWNSLEEKLLPMTKEKEVQLTNKLQGLKKGTRSLDEYLREFKGICDALAA 97

Query: 61  MKKPLDDLSK 71
           ++KP+ DL K
Sbjct: 98  VRKPVSDLDK 107

[Close]

BLAST of Moc07g20320 vs. ExPASy TrEMBL
Match: A0A2K3PNP5 (Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g013628 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-09
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAA 60
           MI G DT Y +W SL E  L  T++ E  +   L+ L KGNLSLDEYI+KFK L +KL+A
Sbjct: 915 MILGGDTAYYIWSSLHEQLLPNTEDGEAQLKNSLYALSKGNLSLDEYIRKFKELCNKLSA 974

Query: 61  MKKPLDDLSK 71
           + KP+ D+ K
Sbjct: 975 IGKPVSDVDK 984

[Close]

BLAST of Moc07g20320 vs. ExPASy TrEMBL
Match: A5AU03 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_013750 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-09
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 1   MIEGLDTTYKVWKSLEETPLAITKENEIHISEVLHYLRKGNLSLDEYIKKFKSLSDKLAA 60
           +++G +T Y VW SL E  L +TKE E+ ++  L  ++KG  SLDEY+++FK + D LAA
Sbjct: 523 LLDGTETAYDVWNSLGEKLLPMTKEKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAA 582

Query: 61  MKKPLDDLSK 71
           ++KP+ DL K
Sbjct: 583 VRKPVSDLDK 592

The following BLAST results are available for this feature:

BLAST of Moc07g20320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154021.1	2.1e-15	62.86	uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncha...	[more]
KAA0051410.1	2.1e-15	68.12	putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak...	[more]
RVX03989.1	5.9e-10	48.57	hypothetical protein CK203_021715 [Vitis vinifera]	[more]
CAN74381.1	6.5e-09	45.71	hypothetical protein VITISV_007944 [Vitis vinifera]	[more]
RVW43526.1	6.5e-09	45.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc07g20320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g20320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMG5	1.0e-15	62.86	uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7U8B5	1.0e-15	68.12	Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m...	[more]
A0A438J4W0	2.8e-10	48.57	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_021715 PE=4 SV=1	[more]
A0A2K3PNP5	3.1e-09	51.43	Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g013628...	[more]
A5AU03	3.1e-09	45.71	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]

BLAST of Moc07g20320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..68 e-value: 8.2E-7 score: 28.9
None	No IPR available	PANTHER	PTHR47481:SF2	SUBFAMILY NOT NAMED	coord: 1..70
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g20320.1	Moc07g20320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0016301	kinase activity