Moc07g19950 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g19950
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr7: 14333821 .. 14334174 (+)
RNA-Seq Expression	Moc07g19950
Synteny	Moc07g19950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTGCTAAAAGGTTTAACCACTGAAGATAATGCAAAATTACGCCTTCAAGAGTTAGAAGCACTTGACGAAAAGAGACTTGATGCGCAGCAAACATTGGAATACTATCAGGCTCGAATGACCAAAGCCTTCAATAAAAATGTTGGGCCTCGGTCATTTCAGGTTGGTGATATGGTGCTTGCTGTTCGAAGACCTATCATCACGACGTGTCACACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATATCATCAAAGAAGTGTACACAGCATATAAGATCGTTGATAAAGATGGATTGAGAATTGGTCCAATTAACGACAAATTTCTTAAAAGATTTTATGCGTGA

mRNA sequence

ATGGAAGTGCTAAAAGGTTTAACCACTGAAGATAATGCAAAATTACGCCTTCAAGAGTTAGAAGCACTTGACGAAAAGAGACTTGATGCGCAGCAAACATTGGAATACTATCAGGCTCGAATGACCAAAGCCTTCAATAAAAATGTTGGGCCTCGGTCATTTCAGGTTGGTGATATGGTGCTTGCTGTTCGAAGACCTATCATCACGACGTGTCACACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATATCATCAAAGAAGTGTACACAGCATATAAGATCGTTGATAAAGATGGATTGAGAATTGGTCCAATTAACGACAAATTTCTTAAAAGATTTTATGCGTGA

Coding sequence (CDS)

ATGGAAGTGCTAAAAGGTTTAACCACTGAAGATAATGCAAAATTACGCCTTCAAGAGTTAGAAGCACTTGACGAAAAGAGACTTGATGCGCAGCAAACATTGGAATACTATCAGGCTCGAATGACCAAAGCCTTCAATAAAAATGTTGGGCCTCGGTCATTTCAGGTTGGTGATATGGTGCTTGCTGTTCGAAGACCTATCATCACGACGTGTCACACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATATCATCAAAGAAGTGTACACAGCATATAAGATCGTTGATAAAGATGGATTGAGAATTGGTCCAATTAACGACAAATTTCTTAAAAGATTTTATGCGTGA

Protein sequence

MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMVLAVRRPIITTCHTGNKFTPKWDGPYIIKEVYTAYKIVDKDGLRIGPINDKFLKRFYA

Homology

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BLAST of Moc07g19950 vs. NCBI nr
Match: XP_022151473.1 (uncharacterized protein LOC111019405 [Momordica charantia])

HSP 1 Score: 206.8 bits (525), Expect = 9.9e-50
Identity = 106/119 (89.08%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMV 60
           M VL+GLTTEDNAKLRLQELEALDEKRLDAQQTLE YQAR+TKAFNKNV PRSFQVGDMV
Sbjct: 831 MAVLEGLTTEDNAKLRLQELEALDEKRLDAQQTLECYQARITKAFNKNVRPRSFQVGDMV 890

Query: 61  LAVRRPIITTCHTGNKFTPKWDGPYIIKEVYT--AYKIVDKDGLRIGPINDKFLKRFYA 118
           L VRRPIITT HT NKFTPKWDGPYIIKEVYT  AY IVDK GLRIGPIN KFLKRFYA
Sbjct: 891 LVVRRPIITTRHTRNKFTPKWDGPYIIKEVYTNGAYMIVDKYGLRIGPINGKFLKRFYA 949

[Close]

BLAST of Moc07g19950 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.2e-48
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1    MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMV 60
            M V +GLTTEDN KLRLQELEALDEKRL+AQQ LE YQARM+KAF+K+V PRSFQVGD+V
Sbjct: 2313 MAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 2372

Query: 61   LAVRRPIITTCHTGNKFTPKWDGPYIIKEVYT--AYKIVDKDGLRIGPINDKFLKRFYA 118
            LAVRRPIITT HTGNKFTPKWDGPYI+KEVYT  AYKIVD+DGLRIGPIN KFLK+FYA
Sbjct: 2373 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFYA 2431

[Close]

BLAST of Moc07g19950 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.2e-48
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1    MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMV 60
            M V +GLTTEDN KLRLQELEALDEKRL+AQQ LE YQARM+KAF+K+V PRSFQVGD+V
Sbjct: 2313 MAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 2372

Query: 61   LAVRRPIITTCHTGNKFTPKWDGPYIIKEVYT--AYKIVDKDGLRIGPINDKFLKRFYA 118
            LAVRRPIITT HTGNKFTPKWDGPYI+KEVYT  AYKIVD+DGLRIGPIN KFLK+FYA
Sbjct: 2373 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFYA 2431

[Close]

BLAST of Moc07g19950 vs. NCBI nr
Match: XP_031737372.1 (uncharacterized protein LOC116402244 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.2e-48
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1    MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMV 60
            M V +GLTTEDN KLRLQELEALDEKRL+AQQ LE YQARM+KAF+K+V PRSFQVGD+V
Sbjct: 1688 MAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 1747

Query: 61   LAVRRPIITTCHTGNKFTPKWDGPYIIKEVYT--AYKIVDKDGLRIGPINDKFLKRFYA 118
            LAVRRPIITT HTGNKFTPKWDGPYI+KEVYT  AYKIVD+DGLRIGPIN KFLK+FYA
Sbjct: 1748 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFYA 1806

[Close]

BLAST of Moc07g19950 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.2e-48
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1    MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMV 60
            M V +GLTTEDN KLRLQELEALDEKRL+AQQ LE YQARM+KAF+K+V PRSFQVGD+V
Sbjct: 2172 MAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 2231

Query: 61   LAVRRPIITTCHTGNKFTPKWDGPYIIKEVYT--AYKIVDKDGLRIGPINDKFLKRFYA 118
            LAVRRPIITT HTGNKFTPKWDGPYI+KEVYT  AYKIVD+DGLRIGPIN KFLK+FYA
Sbjct: 2232 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFYA 2290

[Close]

BLAST of Moc07g19950 vs. ExPASy TrEMBL
Match: A0A6J1DC95 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111019405 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.8e-50
Identity = 106/119 (89.08%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMV 60
           M VL+GLTTEDNAKLRLQELEALDEKRLDAQQTLE YQAR+TKAFNKNV PRSFQVGDMV
Sbjct: 831 MAVLEGLTTEDNAKLRLQELEALDEKRLDAQQTLECYQARITKAFNKNVRPRSFQVGDMV 890

Query: 61  LAVRRPIITTCHTGNKFTPKWDGPYIIKEVYT--AYKIVDKDGLRIGPINDKFLKRFYA 118
           L VRRPIITT HT NKFTPKWDGPYIIKEVYT  AY IVDK GLRIGPIN KFLKRFYA
Sbjct: 891 LVVRRPIITTRHTRNKFTPKWDGPYIIKEVYTNGAYMIVDKYGLRIGPINGKFLKRFYA 949

[Close]

BLAST of Moc07g19950 vs. ExPASy TrEMBL
Match: A0A5A7T7W6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00740 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 99/119 (83.19%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMV 60
           M V +GLTTEDN KLRLQELEALDEKRL+AQQ LE YQARM+KAF+K+V PRSFQVGD+V
Sbjct: 1   MVVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 60

Query: 61  LAVRRPIITTCHTGNKFTPKWDGPYIIKEVYT--AYKIVDKDGLRIGPINDKFLKRFYA 118
           L VRRPIITT HTGNKFTPKWDGPYI+KEVYT  AYKIVD+DGL+IGPINDKFLK+FYA
Sbjct: 61  LTVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDRDGLKIGPINDKFLKKFYA 119

[Close]

BLAST of Moc07g19950 vs. ExPASy TrEMBL
Match: A0A5A7U2B8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00950 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.6e-48
Identity = 97/119 (81.51%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1    MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMV 60
            M + +GLTTEDNA+LRLQELEALDEKRL+AQQ LE YQARM+KAF+K V PRSFQVGD+V
Sbjct: 1489 MAIQEGLTTEDNARLRLQELEALDEKRLEAQQALECYQARMSKAFDKQVKPRSFQVGDLV 1548

Query: 61   LAVRRPIITTCHTGNKFTPKWDGPYIIKEVYT--AYKIVDKDGLRIGPINDKFLKRFYA 118
            LAVRRPIITT HTGNKFTPKWDGPYI+KEV+T  AYKI+D+DGLRIGPIN KFLK+FYA
Sbjct: 1549 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGAYKIIDQDGLRIGPINGKFLKKFYA 1607

[Close]

BLAST of Moc07g19950 vs. ExPASy TrEMBL
Match: A0A5D3CXS1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00440 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 96/118 (81.36%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1    MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMV 60
            M + +GLTT+DNA+LRLQELEALDEKRL+AQQ LE YQARM+KAF+K V PRSFQVGD+V
Sbjct: 1370 MAIQEGLTTKDNARLRLQELEALDEKRLEAQQALECYQARMSKAFDKQVRPRSFQVGDLV 1429

Query: 61   LAVRRPIITTCHTGNKFTPKWDGPYIIKEVYT--AYKIVDKDGLRIGPINDKFLKRFY 117
            LAVRRPIITT HTGNKFTPKWDGPYI+KEV+T  AYKI+D+DGLRIGPINDKFLK+FY
Sbjct: 1430 LAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGAYKIIDQDGLRIGPINDKFLKKFY 1487

[Close]

BLAST of Moc07g19950 vs. ExPASy TrEMBL
Match: A0A5A7V098 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G002050 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 98/119 (82.35%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MEVLKGLTTEDNAKLRLQELEALDEKRLDAQQTLEYYQARMTKAFNKNVGPRSFQVGDMV 60
           M V +GLTTEDN KLRLQELEALDEKRL+AQQ LE YQARM+KAF+K+V PRSFQVGD+V
Sbjct: 1   MAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLV 60

Query: 61  LAVRRPIITTCHTGNKFTPKWDGPYIIKEVYT--AYKIVDKDGLRIGPINDKFLKRFYA 118
           LAVRRPIITT H GNKFTPKWDGPYI+KEVYT  AYKIVD+DGL+IGPIN KFLK+FYA
Sbjct: 61  LAVRRPIITTRHMGNKFTPKWDGPYIVKEVYTNGAYKIVDRDGLKIGPINGKFLKKFYA 119

The following BLAST results are available for this feature:

BLAST of Moc07g19950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151473.1	9.9e-50	89.08	uncharacterized protein LOC111019405 [Momordica charantia]	[more]
XP_031739134.1	3.2e-48	84.03	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	3.2e-48	84.03	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031737372.1	3.2e-48	84.03	uncharacterized protein LOC116402244 [Cucumis sativus]	[more]
XP_031742199.1	3.2e-48	84.03	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]

BLAST of Moc07g19950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g19950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DC95	4.8e-50	89.08	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111019405 PE=4 SV=1	[more]
A0A5A7T7W6	1.5e-48	83.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U2B8	7.6e-48	81.51	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]
A0A5D3CXS1	1.3e-47	81.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V098	1.3e-47	82.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Moc07g19950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g19950.1	Moc07g19950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity