Moc07g09950 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g09950
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr7: 7598152 .. 7600181 (+)
RNA-Seq Expression	Moc07g09950
Synteny	Moc07g09950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTGACACTCCAGCACCCTCATGGATGGATCCAATCATGGAGTTCATCAAAGGAATTTCGCCGCAAGATTCGAAGGAGCAAAAGAAGATGGAGCGAAAAGTAGCTCATTTCATACTCCGAGACGGAGCATTATACCGACGTGGTTTCTCTCTACCTCTGCTCAAGTGTGTAACTCCTGAAGAAGGGAATTACATCCTTAGAGAAATTCATGAAGGAGTGTGTGGAAACCACTCTGGCGCCAGGTTGTTATCGGCCAAGGTGGTTCAACAAGGGTACTATTGGCCCACCGTCGAGCAGGATGCGAAGCAGTTTGTGAAGACTTGTGATGACTGTCAGCACTTCGCAAACATCATTCATCAGCCTCCCGAACTACTTACGCCCATCTCGGCCCCATGGCCATTCGCACAATGGGGAGTCGACATCATAGGTCATTTTCCCCTAGGCAAAGGACAGACCAAGTTCGCCGTTGTCGCTGTGGACTACTTCACCAAGTGGGCCGAGGCCGAGGCGCTCACCCACATTACAGAACCCAGAATCACGTCGTTCGTATGGACAAACATCGTATGCTACTTTGGTATACCGAATGCCATAGTGGCAGACAACGGGAAGCAATTCGACAATGCAAAGTTCAAGGACTTTTGCAGAAAGTTAGGCATAAGTCATCTCAGTTCATCCCCTGCGCATCCACAAGCAAATGGGCAGGTTGAAGCGATAAACAAAATTATAAAACGAGGACTCAAGCTGAGACTGGACTCTAGAAAGGGAAGATGGGTCGAGGAGCTACCTGAAGTATTATGGTCATATCGGACCACCCCAAGAGAGTCAACTGGCGAAACACCGTTCTTACTGGCCTTTGGCTCTGAAGCTGTTGTTCCAGTAGAGATCGGCATGCCAACAGACAGGGTAGAGCAGTACGAGCCAACAAGGAACGAGGAAGAGCTACTCCTTAACCTTGACTTATTAGAAGGGAAAAGGGAAATGGCTCAGCCGTGCTTAGCAGAGTATCAGAACAGAATGACCAGACATTACAACGCCCGAGTTCGACCTCGAAGCTTCCAAGTCGGACATTTGGTCTTAAGAAAGATTCAGAGTCATATGGGCACCCTTGACCCAAGTTGGGAGGGACCGTTCGAGGTTAAAGGAATAGTCCGACCTGGAACGTATATGCTGGCCGATCGGGAAGGAAGAGTGCTTGTGCATCCATGGAACGCGGAGCACCTGAAGCGTTATTACCCTTGAAATATCAAAATGGTCCTAAAATGGACTTGTAAAAATTTTCAAGGGGCAGAACTTTTAATAAACGGAGTTATTTAATTTCGTGACTCTGAGTTCGAACAGAAATTAAATGGGGGCCACGGACTCCCATAAGACTTAAAAACCGGTAAGTTAAAGGTGCGATGTTGAAGGTTCAAGAAATTCAATCCCCTAAACCCACGGGTTCAAGGTGCGATGTGAATATTAATTATGGACTCAAAATCCAACCCTTTGAACGTTTAAGTTAAAGGTGCGATGTGGAAAGTTCAAATTGTTTAATATTGTTTTTCGGACTTCCGAGTTCGAGGAGAAATATTAAAGACCAATAAAAGAAACTCTCAAATTCAAACCTTAAGTAAAAGGTGCGATGTGAAAATAGTTTATCCCACACTCAATCCTTTAAACTTACGAGTTAGAGGTGCGAGATGAAATTATTCATATATGAGTTCTGACTTACAAGAGCAAGTTTAAAAAGCTCAAAGAAAAAAAAAACAATAAAAGAACAAACGGAAGTGGAGAAATGGAAATTTCATTGATTAAAAGAGCAAAGCCAAAGCTTGTATACCTTGCAGCTCGGTCTAACGACTTACACAAAAATAAATAAATAAATATATAAATATATAAAAAATAAATAAATAAGAAGCTTCAGCTACTCCCGAGGTGGGAGAACAGTTCGCCTTGGGAGCCCAGAAGGTTTATATCCTGAGATCCACCCTGCTGCGAAGGGACCTCCTCCTGGGTGGTGCCGGCCTCGACCTGCTCTTGACTAG

mRNA sequence

ATGGAGGTTGACACTCCAGCACCCTCATGGATGGATCCAATCATGGAGTTCATCAAAGGAATTTCGCCGCAAGATTCGAAGGAGCAAAAGAAGATGGAGCGAAAAGTAGCTCATTTCATACTCCGAGACGGAGCATTATACCGACGTGGTTTCTCTCTACCTCTGCTCAACTACTCCCGAGGTGGGAGAACAGTTCGCCTTGGGAGCCCAGAAGGTTTATATCCTGAGATCCACCCTGCTGCGAAGGGACCTCCTCCTGGGTGGTGCCGGCCTCGACCTGCTCTTGACTAG

Coding sequence (CDS)

ATGGAGGTTGACACTCCAGCACCCTCATGGATGGATCCAATCATGGAGTTCATCAAAGGAATTTCGCCGCAAGATTCGAAGGAGCAAAAGAAGATGGAGCGAAAAGTAGCTCATTTCATACTCCGAGACGGAGCATTATACCGACGTGGTTTCTCTCTACCTCTGCTCAACTACTCCCGAGGTGGGAGAACAGTTCGCCTTGGGAGCCCAGAAGGTTTATATCCTGAGATCCACCCTGCTGCGAAGGGACCTCCTCCTGGGTGGTGCCGGCCTCGACCTGCTCTTGACTAG

Protein sequence

MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLNYSRGGRTVRLGSPEGLYPEIHPAAKGPPPGWCRPRPALD

Homology

[Close]

BLAST of Moc07g09950 vs. NCBI nr
Match: XP_022157896.1 (uncharacterized protein LOC111024502 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 3.3e-19
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLN 58
           ME+DTP+PSWMDPI+ FIKGISPQDS EQKKM RK A FILRDGALYRRGFSLPLLN
Sbjct: 250 MEIDTPSPSWMDPIVMFIKGISPQDSNEQKKMARKAARFILRDGALYRRGFSLPLLN 306

[Close]

BLAST of Moc07g09950 vs. NCBI nr
Match: XP_022152233.1 (uncharacterized protein LOC111020002 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 3.3e-19
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLN 58
           ME+DTP+PSWMDPI+ FIKGISPQDS EQKKM RK A FILRDGALYRRGFSLPLLN
Sbjct: 250 MEIDTPSPSWMDPIVMFIKGISPQDSNEQKKMARKAARFILRDGALYRRGFSLPLLN 306

[Close]

BLAST of Moc07g09950 vs. NCBI nr
Match: XP_022155184.1 (uncharacterized protein LOC111022318 [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 9.7e-19
Identity = 58/89 (65.17%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLNYSR 60
           MEVDTPAPSWMDPI+EFIKG  PQDSKEQKKM RKV  FILRDGALYRRGFSLPLL    
Sbjct: 191 MEVDTPAPSWMDPIVEFIKGNPPQDSKEQKKMARKVVRFILRDGALYRRGFSLPLLKC-- 250

Query: 61  GGRTVRLGSPEGLY--PEIHPAAKGPPPG 88
                 +   EG+Y   EIH    G   G
Sbjct: 251 ------VTPEEGIYILREIHEGVCGNHSG 271

[Close]

BLAST of Moc07g09950 vs. NCBI nr
Match: XP_022158589.1 (uncharacterized protein LOC111025045 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 3.7e-18
Identity = 57/85 (67.06%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 1   MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLNYSR 60
           MEVDTPAPSWMDPI+EFIKG  PQDSKEQKKM RK A FILRD ALYRRGFSLPLL    
Sbjct: 430 MEVDTPAPSWMDPIVEFIKGNLPQDSKEQKKMARKAARFILRDRALYRRGFSLPLLKC-- 489

Query: 61  GGRTVRLGSPEGLY--PEIHPAAKG 84
                 +   EGLY   EIH    G
Sbjct: 490 ------VTPEEGLYILREIHEGVCG 506

[Close]

BLAST of Moc07g09950 vs. NCBI nr
Match: XP_022158092.1 (uncharacterized protein LOC111024661 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 54/89 (60.67%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1   MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLNYSR 60
           ME+DTP+PSWMDPI+EFIKG  PQDSKEQK+M R+ A FILRDG LYRRGFSLPLL    
Sbjct: 286 MEIDTPSPSWMDPILEFIKGNPPQDSKEQKRMARRAARFILRDGVLYRRGFSLPLLKC-- 345

Query: 61  GGRTVRLGSPEGLY--PEIHPAAKGPPPG 88
                 +   EGLY   EIH    G   G
Sbjct: 346 ------VTPEEGLYILREIHEGVCGNHSG 366

[Close]

BLAST of Moc07g09950 vs. ExPASy TrEMBL
Match: A0A6J1DZH2 (uncharacterized protein LOC111024502 OS=Momordica charantia OX=3673 GN=LOC111024502 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLN 58
           ME+DTP+PSWMDPI+ FIKGISPQDS EQKKM RK A FILRDGALYRRGFSLPLLN
Sbjct: 250 MEIDTPSPSWMDPIVMFIKGISPQDSNEQKKMARKAARFILRDGALYRRGFSLPLLN 306

[Close]

BLAST of Moc07g09950 vs. ExPASy TrEMBL
Match: A0A6J1DEB3 (uncharacterized protein LOC111020002 OS=Momordica charantia OX=3673 GN=LOC111020002 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLN 58
           ME+DTP+PSWMDPI+ FIKGISPQDS EQKKM RK A FILRDGALYRRGFSLPLLN
Sbjct: 250 MEIDTPSPSWMDPIVMFIKGISPQDSNEQKKMARKAARFILRDGALYRRGFSLPLLN 306

[Close]

BLAST of Moc07g09950 vs. ExPASy TrEMBL
Match: A0A6J1DPI3 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111022318 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.7e-19
Identity = 58/89 (65.17%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLNYSR 60
           MEVDTPAPSWMDPI+EFIKG  PQDSKEQKKM RKV  FILRDGALYRRGFSLPLL    
Sbjct: 191 MEVDTPAPSWMDPIVEFIKGNPPQDSKEQKKMARKVVRFILRDGALYRRGFSLPLLKC-- 250

Query: 61  GGRTVRLGSPEGLY--PEIHPAAKGPPPG 88
                 +   EG+Y   EIH    G   G
Sbjct: 251 ------VTPEEGIYILREIHEGVCGNHSG 271

[Close]

BLAST of Moc07g09950 vs. ExPASy TrEMBL
Match: A0A6J1DZV0 (uncharacterized protein LOC111025045 OS=Momordica charantia OX=3673 GN=LOC111025045 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 57/85 (67.06%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 1   MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLNYSR 60
           MEVDTPAPSWMDPI+EFIKG  PQDSKEQKKM RK A FILRD ALYRRGFSLPLL    
Sbjct: 430 MEVDTPAPSWMDPIVEFIKGNLPQDSKEQKKMARKAARFILRDRALYRRGFSLPLLKC-- 489

Query: 61  GGRTVRLGSPEGLY--PEIHPAAKG 84
                 +   EGLY   EIH    G
Sbjct: 490 ------VTPEEGLYILREIHEGVCG 506

[Close]

BLAST of Moc07g09950 vs. ExPASy TrEMBL
Match: A0A6J1DWA1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024661 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.8e-18
Identity = 54/89 (60.67%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1   MEVDTPAPSWMDPIMEFIKGISPQDSKEQKKMERKVAHFILRDGALYRRGFSLPLLNYSR 60
           ME+DTP+PSWMDPI+EFIKG  PQDSKEQK+M R+ A FILRDG LYRRGFSLPLL    
Sbjct: 286 MEIDTPSPSWMDPILEFIKGNPPQDSKEQKRMARRAARFILRDGVLYRRGFSLPLLKC-- 345

Query: 61  GGRTVRLGSPEGLY--PEIHPAAKGPPPG 88
                 +   EGLY   EIH    G   G
Sbjct: 346 ------VTPEEGLYILREIHEGVCGNHSG 366

The following BLAST results are available for this feature:

BLAST of Moc07g09950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157896.1	3.3e-19	85.96	uncharacterized protein LOC111024502 [Momordica charantia]	[more]
XP_022152233.1	3.3e-19	85.96	uncharacterized protein LOC111020002 [Momordica charantia]	[more]
XP_022155184.1	9.7e-19	65.17	uncharacterized protein LOC111022318 [Momordica charantia]	[more]
XP_022158589.1	3.7e-18	67.06	uncharacterized protein LOC111025045 [Momordica charantia]	[more]
XP_022158092.1	1.8e-17	60.67	uncharacterized protein LOC111024661 [Momordica charantia]	[more]

BLAST of Moc07g09950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g09950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZH2	1.6e-19	85.96	uncharacterized protein LOC111024502 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DEB3	1.6e-19	85.96	uncharacterized protein LOC111020002 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DPI3	4.7e-19	65.17	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111022318 PE=4 SV=1	[more]
A0A6J1DZV0	1.8e-18	67.06	uncharacterized protein LOC111025045 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DWA1	8.8e-18	60.67	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024661 PE=4 SV=1	[more]

BLAST of Moc07g09950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g09950.1	Moc07g09950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity