Moc07g06550 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g06550
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionAccumulation-associated-related
Locationchr7: 5385214 .. 5388521 (-)
RNA-Seq ExpressionMoc07g06550
SyntenyMoc07g06550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGGTGGGGCCCCTTGTTCAAGTCCCAGAGTCAGCATTTAAGGGAACACTCACCTACTTCCCTAAAGTCGGGGAGGAGTGAATTCCATCTTGTGAAGTTATGTTCCCAACTCCCCACTCGGTCTCGTCCCCAAAATGGTAGGAATGTTGAGTCGGCGACTCGGGCCACTCTCACCCATACAGATCAAAGGACGAGCCCTCATGGACAGGAGTCCATAACTCACTCAGGATTGAGAATGAGTTGCCTAGTCATCCTAAGAAATAGCAATCTATTAGTTAACGGTATTACATCTAAAAATTGCCTATTTCGCGGTCCGGTCTTATACAAACTCATTGTATAGGATACCCGTACTCGCATGTCTCCACACGAACGACCTGGATCGAGTCGTCTGTAACCTTTACAGAGTGGGCCGTATCCATAGTGTTGCCAGGATAAGGTACCCAGCCTTATCCATATACTATAGACTCTTTAGGTTATTCACGGGACATTATCCGTTCATATATCAGGGATATATCAAATATATACCCCGTATATCAACTATATACCCAGTATATATACTGTCCCGATTACATCATAAATAACCTTGGATGTTTAGTTTATTGGATTTTGGACAATGCAAAGCTATGATTCAACAACAAAATTTATTGAATAAAATTTTATTAAATAGACATTTGTTTTTACAAAATACAAACTACGAGTTTAGGGCAACACACCCAACACATACATGTCAGGTTTTTCTGGAAATATATATTACTTATTAGCTCTATAAATCCTTAAAGGAGTTAGTAAATGTCTTAGAACTTATCTTCCTAATATATGATATTTAATAATGTTTTCATTCACTTCAAATCAATATGATGACTTTTAAGATGTCTAGGAATAAAGACCTCTCCTATATCAAATATTGATGCCCTTAACAAGAGTAAACTTTTTAAAACTGTATGCAATGTTGTTAAACATTTCAAGAAGCCATATTGAATAGGTTATAAATGACTGTTCTAAAATACTAAAGCTCTCAATAACACATAATTCGACAATTACAGATCCTTGATCATTCTTAATACAGGCTTTAATGTTTGTTTAATCTTTAGAACCAACAAACAAGTAATAGAATCACCAAAGTCTATTCAACACATATGATAAGTTTTCATATGCAAGTATAGCTTGTTAAATACCAAAGTGAGAAGCCATATTTTCTTTATACTTTATGTGGCGATGTATTTGAAACATATTTTTTCTATATGTTCAAATTTCCCAAAATTATCAAGAGAAGTCCTAAGCTTGATTTTTTTGTGATTTAGGCGAATATATGTTCCAAATAAACCTTAGTACCAACCTTAATTTCTTTCTTTAAGGAAATAATTAATTAAAGTGTAAATTTTGTATTTTCTGACTTAACTCATTTTCCTTAAAACATATGGTCAGAAATTAGGTTACTAAGAGTTCAATATCTACCCTTATAACTATCATAAACCCACTACAAACTGATTGTATAGTGTCTCGAATAAGTATCAAATACACAAGTAAACCTTTGAATATTTTCAATTTAGTGTACACTCTAGTGTTCCTTTATTCTTTATTAAGACATAGTGAAAAGAAAAAATTAAATGTCTATTTCTTGTGTAATTTTCAAACAATCCTTATAACTTAAGGAATTTTCCTAATTATTTCCTCGTTAAACATAATCCCCTTGAATGTCGCAAAACACTTGTAATTAAGGTTACTCCTACTTTTCAAGATCTCAATTAAACCTTAGAGGGATATTGATTTGCAAAAATTGGAGTGTTTTCTTTCTTTATCACAAGTTCAAAATTCATGCAAACTTGAATAAAAATTATTCTTATATACACAATAAGACAATTAAATAATATTGACAATAACTAATTCAATAATAAAACATGCTCGCAATTAACCTTAAGTATTGATAAAATACTTTATATTTAAATTCAATGAGGACAACAAGATACCTAGCAAAACATTGATAGTTTTCTTTTAGGCCAACAACAAAATAAAAATTGTATTCCGACGTTTTCATTAAAGATATATATTTTTAGTTAATAATAAATTTTTAAGTTAATTTGGTTTAGTTGTTGTTAAAAAAAAAGGTGATTTATTTCAAAATTGCAAAAGACCAATCAATCCAGTCTAGCTAAAAAGATAACTTTATTTGAACTCAAGTTCAATTTATTTGAATGGATAAATATAACCCAAATTAAATTTATGACCCATCCCAAGCTCATCAGTAAAAATTGGAAGATGCGACATGAAAGAAAATAATTGTTGCATTAGTATTAATGTTATTTTAATTTTAACAATAGCTAGTAAAATAATTGGAAAATTATTAATTTTTTAAGAAAAAATACAATTGTGTATTTTGTTAAACCTATAAAATTGATCACTCTTACAAATGAGACATTTTATTTTTTAATTAATCCCTATTACACTCTTAAATTAATCACTGCCACTTATTTTATTATAAAGGAGAATTGCATTAGGTAGCAAATTAGTTTTATATATTTAACAATATAACACCCATCTTTTACATTTTCAAATATAACAAATGTTTTAGATTTCTAATTTTGAATATTTAGTATTCCCAAATTACTCTTTCTAGACATACACATTGCAAGTATATCAGAAACTCATATCAGTAGTATATCAAATGTATATTGTTGATGCGTGGATTTCGGTCCTCCGGTTCTCCTCCTCGCACCCACCAAACTTGTTGATCCGGGACTAGTACCTGCAAAACCAAATCGAGCTAAACCGGTGTGACTCTAGTCACACGGGCTCCGATGCTTAAGTTAGTAAGAGAACAAGGTAAATGTAGTCACTTCTTCGCCTCCACCTACCTCTAAGGTCGGATCGTTACTTATAGCGTGGAGTTGTTCCAGAACTTTCCATAGCTAACCCTAATTCACCGTTGCAGGGCCTGGGTGGAATCGTCGATCGAAGATGGGGGATCGTTGGCTGGGCCGTGGGCCGAGCCCCGGGTCTGGACCGAGGCCCGGGTTGGGGCCGAGCACCGGGTCGGGACCGAGCCCCGGGTCGGGACCGAGCCCCGGGTCGGGACCGAGCCCCGGGTCGGGACCGAGCCCTCTCGGCCCGGTTAGTTCTCCGCCAGTCGCTTTCCTCGATCTTTGCCCCGACAATAGATCGTTCTTTGGGCTGGCCCGTTACGTCACGGGCCGGTCTCCCCCAATCAATGATCTCAGACTTCAACTCCTTGTCCCGTTTCGGGTCGTTTTTGTTCTCCATAACAATGGCCCCCACTCTCAAAACAGCAGACGAATAATTGTGTAA

mRNA sequence

ATGAGAGGGTGGGGCCCCTTGTTCAAGTCCCAGAGTCAGCATTTAAGGGAACACTCACCTACTTCCCTAAAGTCGGGGAGGAGTGAATTCCATCTTGTGAAGTTATGTTCCCAACTCCCCACTCGGTCTCGTCCCCAAAATGGTAGGAATGTTGAGTCGGCGACTCGGGCCACTCTCACCCATACAGATCAAAGGACGAGCCCTCATGGACAGGAGTCCATAACTCACTCAGGATTGAGAATGAGTTGCCTAGTCATCCTAAGAAATAGCAATCTATTAGTTAACGGGCCTGGGTGGAATCGTCGATCGAAGATGGGGGATCGTTGGCTGGGCCGTGGGCCGAGCCCCGGGTCTGGACCGAGGCCCGGGTTGGGGCCGAGCACCGGGTCGGGACCGAGCCCCGGGTCGGGACCGAGCCCCGGGTCGGGACCGAGCCCCGGGTCGGGACCGAGCCCTCTCGGCCCGGTTAGTTCTCCGCCAGTCGCTTTCCTCGATCTTTGCCCCGACAATAGATCGTTCTTTGGGCTGGCCCGTTACGTCACGGGCCGGTCTCCCCCAATCAATGATCTCAGACTTCAACTCCTTGTCCCGTTTCGGGTCGTTTTTGTTCTCCATAACAATGGCCCCCACTCTCAAAACAGCAGACGAATAATTGTGTAA

Coding sequence (CDS)

ATGAGAGGGTGGGGCCCCTTGTTCAAGTCCCAGAGTCAGCATTTAAGGGAACACTCACCTACTTCCCTAAAGTCGGGGAGGAGTGAATTCCATCTTGTGAAGTTATGTTCCCAACTCCCCACTCGGTCTCGTCCCCAAAATGGTAGGAATGTTGAGTCGGCGACTCGGGCCACTCTCACCCATACAGATCAAAGGACGAGCCCTCATGGACAGGAGTCCATAACTCACTCAGGATTGAGAATGAGTTGCCTAGTCATCCTAAGAAATAGCAATCTATTAGTTAACGGGCCTGGGTGGAATCGTCGATCGAAGATGGGGGATCGTTGGCTGGGCCGTGGGCCGAGCCCCGGGTCTGGACCGAGGCCCGGGTTGGGGCCGAGCACCGGGTCGGGACCGAGCCCCGGGTCGGGACCGAGCCCCGGGTCGGGACCGAGCCCCGGGTCGGGACCGAGCCCTCTCGGCCCGGTTAGTTCTCCGCCAGTCGCTTTCCTCGATCTTTGCCCCGACAATAGATCGTTCTTTGGGCTGGCCCGTTACGTCACGGGCCGGTCTCCCCCAATCAATGATCTCAGACTTCAACTCCTTGTCCCGTTTCGGGTCGTTTTTGTTCTCCATAACAATGGCCCCCACTCTCAAAACAGCAGACGAATAATTGTGTAA

Protein sequence

MRGWGPLFKSQSQHLREHSPTSLKSGRSEFHLVKLCSQLPTRSRPQNGRNVESATRATLTHTDQRTSPHGQESITHSGLRMSCLVILRNSNLLVNGPGWNRRSKMGDRWLGRGPSPGSGPRPGLGPSTGSGPSPGSGPSPGSGPSPGSGPSPLGPVSSPPVAFLDLCPDNRSFFGLARYVTGRSPPINDLRLQLLVPFRVVFVLHNNGPHSQNSRRIIV
Homology
[Close]
BLAST of Moc07g06550 vs. NCBI nr
Match: CAF3351194.1 (unnamed protein product [Rotaria sp. Silwood1])

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-05
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 111 GRGPSPGSGPRPGLGPSTGSGPSPGSGPSPGSGPSPGSGPS 152
           G GPSPGSGP PG GPS GSGP PGSGPSPGSGP PGSGP+
Sbjct: 65  GSGPSPGSGPGPGSGPSPGSGPGPGSGPSPGSGPGPGSGPN 105

[Close]
BLAST of Moc07g06550 vs. NCBI nr
Match: WP_128379254.1 (NADH-quinone oxidoreductase subunit C [Streptomyces cavernae])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-04
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 111 GRGPSPGSGPRPGLGPSTGSGPSPGSGPSPGSGPSPGSGPSP 153
           G GP+PGSGP PG GP+ GSGP+PGSGP+PGSGP+PGSGP+P
Sbjct: 400 GSGPAPGSGPAPGSGPAPGSGPTPGSGPAPGSGPAPGSGPAP 441

[Close]
BLAST of Moc07g06550 vs. NCBI nr
Match: NXX00985.1 (MAGL2 protein [Larus smithsonianus])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-04
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 111 GRGPSPGSGPRPGLGPSTGSGPSPGSGPSPGSGPSPGSGPSP 153
           G GP+PGSGP PG GP+ GSGP+PGSGP+PGSGP+PGSGP+P
Sbjct: 4   GSGPAPGSGPAPGSGPAPGSGPAPGSGPAPGSGPAPGSGPAP 45

[Close]
BLAST of Moc07g06550 vs. NCBI nr
Match: PPR10257.1 (hypothetical protein CFH41_01993, partial [Alphaproteobacteria bacterium MarineAlpha11_Bin1])

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-04
Identity = 36/47 (76.60%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 111 GRGPSPGSGPRPGLGPSTGSGPSPGSGPSPGSGPSPGSGPSP-LGPV 157
           G GPSPG GP PG GPS G GPSPG GPSPG GPSPG GPSP  GPV
Sbjct: 71  GFGPSPGFGPSPGFGPSPGFGPSPGFGPSPGFGPSPGFGPSPGFGPV 117

[Close]
BLAST of Moc07g06550 vs. ExPASy TrEMBL
Match: A0A2S6Q8L4 (Uncharacterized protein (Fragment) OS=Alphaproteobacteria bacterium MarineAlpha11_Bin1 OX=2013106 GN=CFH41_01993 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-04
Identity = 36/47 (76.60%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 111 GRGPSPGSGPRPGLGPSTGSGPSPGSGPSPGSGPSPGSGPSP-LGPV 157
           G GPSPG GP PG GPS G GPSPG GPSPG GPSPG GPSP  GPV
Sbjct: 71  GFGPSPGFGPSPGFGPSPGFGPSPGFGPSPGFGPSPGFGPSPGFGPV 117

[Close]
BLAST of Moc07g06550 vs. ExPASy TrEMBL
Match: A0A2P6VGR6 (Accumulation-associated-related OS=Micractinium conductrix OX=554055 GN=C2E20_3304 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.7e-04
Identity = 43/82 (52.44%), Postives = 47/82 (57.32%), Query Frame = 0 

Query: 111 GRGPSPGSGPRPGLGPSTGSGPSPGSGPSPGSGPSPGSGPSP---LGPVSSP-PVAFLD- 170
           G  PSPGS P PG  P  GS P PGS PSPGS PSPGS PSP    GP SSP P +  D 
Sbjct: 300 GSSPSPGSSPGPGSSPDPGSSPDPGSSPSPGSSPSPGSSPSPGSSPGPGSSPDPGSSPDP 359

Query: 171 -LCPDNRSFFGLARYVTGRSPP 187
              PD      L+ Y + R+PP
Sbjct: 360 GSSPDVSFEIQLSGYTSSRAPP 381

The following BLAST results are available for this feature:
BLAST of Moc07g06550 vs. NCBI nr
Match NameE-valueIdentityDescription
CAF3351194.18.1e-0582.93unnamed protein product [Rotaria sp. Silwood1][more]
WP_128379254.11.1e-0476.19NADH-quinone oxidoreductase subunit C [Streptomyces cavernae][more]
NXX00985.11.1e-0476.19MAGL2 protein [Larus smithsonianus][more]
PPR10257.19.0e-0476.60hypothetical protein CFH41_01993, partial [Alphaproteobacteria bacterium MarineA... [more]
BLAST of Moc07g06550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc07g06550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2S6Q8L44.4e-0476.60Uncharacterized protein (Fragment) OS=Alphaproteobacteria bacterium MarineAlpha1... [more]
A0A2P6VGR69.7e-0452.44Accumulation-associated-related OS=Micractinium conductrix OX=554055 GN=C2E20_33... [more]
BLAST of Moc07g06550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g06550.1Moc07g06550.1mRNA