Moc07g05650 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g05650
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNase H domain-containing protein
Location	chr7: 4706864 .. 4707960 (+)
RNA-Seq Expression	Moc07g05650
Synteny	Moc07g05650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTATTGTTTGGCTTGGGGCCTTGGATGGAGATTACTCGGTTTCTTCGACCTATTCCCAGCTCATTTCAACCACAGCAACAGGTCATTCCCCTTCGATTTGGAATCGAATCTAGAAGTGGGACGGGTCTAGCAGGATCCGTTTCTTTCTTTGGCTAGTGACTCAAAATCGCCTTCTCACAAATTAGGAAAGGGTCCGTTGTCACCTTTCCGAGTCTGCTGCCTGCCCTTATTGCCCTGATTTAGTGGAGTCTTTGTTGCATATTCTCCGTGACTGCCCCCGTGCTCGCGATTTGTGGCATGGCCTGATCCCCTTGGGTCTCCCATCTTGTTTCTTTGATGGTAACATTGCCCAATGGATTCAATTTAATTTGTTGTTTCCTTTGGTTCCGCATTGGTCGTCTATTTATGCAATAGGGTGTTGGTTGCTTTGGAATTGGCGCAATAATTTATCTTTCAACCAGAATTCTCCTTTCCGACCATGCCCGCTCTGATAGTTCGTCGTACTGCCAGTAATTTTGTGAATTCATGGAATTTGGTTGCCCCTTTCCTTTCAAAGCCTTGTCGTCGTTGGTCTGCAATAAGTTGGGAAGCCCCCCGGCTAATCGTTGGAAGCTTAATACTGATGGATCCGCTCTTGGGAATCTGGGCCCTGCTAGTACAGGCAGCCTCATTCGAGATCTAAATGGTCAGTGGATAGTGGGTTTAATGCATAATCTAGGTCATGGGATGTCGTTTACAACCGAATGTGGAGTGTATTTTCTGGGTTGAAGATTGCCTGGAATGTTGGTTGTAAGAATCTTCTGGTTGAGGTGGACTCTGAAATGGTGTGCAATATCCTATCTAAGGGATATCATTACTCGCCTTTTCTTCGTCAATTAGTGTCGAATATTAACCATCTTTTGTCAAGGGATTGGTTTGTCGACTTTTCGCACATCTATCGTGAAGCCAATTCTTGCGAGGACTGGCTTGCTCGTTGGGCTTCTTCGGCTACTGTGGGTTGTCATGGTTGTGAGCGGTCGCCGCCAGGTCTCTCTCCCTTGTTGATTGCTAATGCTATGGGGTCTCCATGCCCCGCCTTGTTCCTCTTTTAG

mRNA sequence

ATGACTCTATTGTTTGGCTTGGGGCCTTGGATGGAGATTACTCGGTTTCTTCGACCTATTCCCAGCTCATTTCAACCACAGCAACAGGAAAGGGTCCGTTGTCACCTTTCCGAGTCTGCTGCCTGCCCTTATTGCCCTGATTTAGTGGAGTCTTTGTTGCATATTCTCCGTGACTGCCCCCGTGCTCGCGATTTGTGGCATGGCCTGATCCCCTTGGGTCTCCCATCTTGTTTCTTTGATGAATTCTCCTTTCCGACCATGCCCGCTCTGATAGTTCGTCGTACTGCCAGTAATTTTGTGAATTCATGGAATTTGGTTGCCCCTTTCCTTTCAAAGCCTTGTCGTCGTTGGTCATGGGATGTCGTTTACAACCGAATGTGGAGTGTATTTTCTGGGTTGAAGATTGCCTGGAATGTTGGTTGTAAGAATCTTCTGGTTGAGGTGGACTCTGAAATGGTGTGCAATATCCTATCTAAGGGATATCATTACTCGCCTTTTCTTCGTCAATTAGTGTCGAATATTAACCATCTTTTGTCAAGGGATTGGTTTGTCGACTTTTCGCACATCTATCGTGAAGCCAATTCTTGCGAGGACTGGCTTGCTCGTTGGGCTTCTTCGGCTACTGTGGGTTGTCATGGTTGTGAGCGGTCGCCGCCAGGTCTCTCTCCCTTGTTGATTGCTAATGCTATGGGGTCTCCATGCCCCGCCTTGTTCCTCTTTTAG

Coding sequence (CDS)

ATGACTCTATTGTTTGGCTTGGGGCCTTGGATGGAGATTACTCGGTTTCTTCGACCTATTCCCAGCTCATTTCAACCACAGCAACAGGAAAGGGTCCGTTGTCACCTTTCCGAGTCTGCTGCCTGCCCTTATTGCCCTGATTTAGTGGAGTCTTTGTTGCATATTCTCCGTGACTGCCCCCGTGCTCGCGATTTGTGGCATGGCCTGATCCCCTTGGGTCTCCCATCTTGTTTCTTTGATGAATTCTCCTTTCCGACCATGCCCGCTCTGATAGTTCGTCGTACTGCCAGTAATTTTGTGAATTCATGGAATTTGGTTGCCCCTTTCCTTTCAAAGCCTTGTCGTCGTTGGTCATGGGATGTCGTTTACAACCGAATGTGGAGTGTATTTTCTGGGTTGAAGATTGCCTGGAATGTTGGTTGTAAGAATCTTCTGGTTGAGGTGGACTCTGAAATGGTGTGCAATATCCTATCTAAGGGATATCATTACTCGCCTTTTCTTCGTCAATTAGTGTCGAATATTAACCATCTTTTGTCAAGGGATTGGTTTGTCGACTTTTCGCACATCTATCGTGAAGCCAATTCTTGCGAGGACTGGCTTGCTCGTTGGGCTTCTTCGGCTACTGTGGGTTGTCATGGTTGTGAGCGGTCGCCGCCAGGTCTCTCTCCCTTGTTGATTGCTAATGCTATGGGGTCTCCATGCCCCGCCTTGTTCCTCTTTTAG

Protein sequence

MTLLFGLGPWMEITRFLRPIPSSFQPQQQERVRCHLSESAACPYCPDLVESLLHILRDCPRARDLWHGLIPLGLPSCFFDEFSFPTMPALIVRRTASNFVNSWNLVAPFLSKPCRRWSWDVVYNRMWSVFSGLKIAWNVGCKNLLVEVDSEMVCNILSKGYHYSPFLRQLVSNINHLLSRDWFVDFSHIYREANSCEDWLARWASSATVGCHGCERSPPGLSPLLIANAMGSPCPALFLF

Homology

[Close]

BLAST of Moc07g05650 vs. NCBI nr
Match: XP_031376896.1 (uncharacterized protein LOC116192475 [Punica granatum])

HSP 1 Score: 129.0 bits (323), Expect = 5.4e-26
Identity = 83/295 (28.14%), Postives = 125/295 (42.37%), Query Frame = 0


Query: 31  RVRCHLSESAACPYCPDLVESLLHILRDCPRARDLWHGLIP-----------------LG 90
           RV  HL+ S  C +C    E++LH+LRDCP  R  W+ L+P                 L 
Sbjct: 115 RVSRHLAVSGLCDFCSSTAETILHVLRDCPGTRSAWYRLVPRNIRDRFFSEPLKPWLMLN 174

Query: 91  LPSC-----------------------FFDEFSFPTMPALIVRRTASNFVNSWNLVAPFL 150
           L SC                       F  +F  P      +R TA NF ++ +L +   
Sbjct: 175 LGSCDEKWSTLFGVACWLLWGWRNKGLFEQDFVRPRDEVRAIRATAHNFEHARDLRSN-T 234

Query: 151 SKPCRRWSW-----------------------------------------DVVYN----- 210
           S+P R W W                                           ++N     
Sbjct: 235 SQPRREWRWIQWRRPPPGWVKVNTDGASRGNPGIAGAGGLLRNDDGHWICGFLHNVGFAT 294

Query: 211 ----RMWSVFSGLKIAWNVGCKNLLVEVDSEMVCNILSKGYHYSPFLRQLVSNINHLLSR 236
                +W    GL++AW+ G +++++E+DS++V  +LS G  ++  L  LVS+I+ +L R
Sbjct: 295 STIAELWGALVGLQLAWDRGYRHVVLELDSQVVQRLLSDGSTHNQCLEPLVSSISDILHR 354

[Close]

BLAST of Moc07g05650 vs. NCBI nr
Match: PKI39106.1 (hypothetical protein CRG98_040530 [Punica granatum])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-17
Identity = 47/126 (37.30%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 116 RWSWDVVYN---------RMWSVFSGLKIAWNVGCKNLLVEVDSEMVCNILSKGYHYSPF 175
           RW    V+N         ++W    GL++AW+ G + +++E+DS++V  +LS     + +
Sbjct: 403 RWICGFVHNVGFATSTIAKLWGALVGLELAWDRGYRYVVLELDSQVVQRLLSNQPPTNSY 462

Query: 176 LRQLVSNINHLLSRDWFVDFSHIYREANSCEDWLARWASSATVGCHGCERSPPGLSPLLI 233
           L  LV+NIN++L RDW V+ SH Y+E+N C DW+ARWA+S ++G +    +P G++ LL 
Sbjct: 463 LDPLVNNINNILYRDWHVEVSHTYQESNMCADWMARWATSFSLGSYFFVATPIGINALLE 522

[Close]

BLAST of Moc07g05650 vs. NCBI nr
Match: CAA7042576.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-17
Identity = 70/243 (28.81%), Postives = 103/243 (42.39%), Query Frame = 0


Query: 30  ERVRCHLSESAACPYCPDLVESLLHILRDCPRARDLWHGLIPL----------------- 89
           ER R HLS S  C  C    E++LH+LRDCP    +W  ++P+                 
Sbjct: 566 ERQRRHLSTSGVCQVCRGGDETILHVLRDCPAMEGIWRRIVPVRKRDRVQFVKDQTREAT 625

Query: 90  -GLPSCFFDEFSFPTMPALIVR-----------------RTASNFVNSWNLVAPFLSKPC 149
               S   +  +  T    +V                  R  S   ++  ++   L   C
Sbjct: 626 AAHQSVNINSRTRATWIERLVHWVRPSAGWVKVNTDGASRGNSGLASAGGVLRDELGCWC 685

Query: 150 RRWSWDV-----VYNRMWSVFSGLKIAWNVGCKNLLVEVDSEMVCNILSKGYHYSPFLRQ 209
           R ++ ++         +W V+ GL IAW+   + + +EVDSEMV   L  G      L  
Sbjct: 686 RGFALNIGICTAPLAELWGVYYGLCIAWDSKAQRVELEVDSEMVVGFLRTGIEEVHSLSF 745

Query: 210 LVSNINHLLSRDWFVDFSHIYREANSCEDWLARWASSATVGCHGCERSPPGLSPLLIANA 233
           LV   +  LSRDW V  SH+YREAN   D LA +A S   G H     P  + PL + ++
Sbjct: 746 LVRLCHGFLSRDWIVRVSHVYREANRLADGLANYAFSLPSGFHSFTSVPDDVHPLFLEDS 805

[Close]

BLAST of Moc07g05650 vs. NCBI nr
Match: KAA3475772.1 (non-LTR retroelement reverse transcriptase-like [Gossypium australe])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-17
Identity = 69/273 (25.27%), Postives = 110/273 (40.29%), Query Frame = 0


Query: 29  QERVRCHLSESAACPYCPDLVESLLHILRDCPRARDLWHGLIPLGLPSCFFDEFSFPTMP 88
           + R R  L+ +A C  C  L E +LH+LRDCP +R LW  ++P  L   FF+  +   + 
Sbjct: 75  ERRARMGLASTAQCERCTTLSEDMLHLLRDCPISRSLWLRMVPTSLQREFFECGTSEWIK 134

Query: 89  ALIVRRTASNFVNSWNLV--------------------APFLSKPCRR-----W-----S 148
           A I+ RT +     WN++                     P  ++P R+     W      
Sbjct: 135 ANILCRTRARHGTEWNVLFAVSLWWLWKWRNESIFQGNDPPRTQPRRQERLISWKPPPSG 194

Query: 149 WDVVYN----------------------------------------RMWSVFSGLKIAWN 208
           W ++                                           + +V+ GLK+AW+
Sbjct: 195 WTLINTDGASRGNPGSAAAAVCLRDDTGKWVARSVTNLGICSAALAEIMAVYQGLKLAWD 254

Query: 209 VGCKNLLVEVDSEMVCNILSKGYHYSPFLRQLVSNINHLLSRDWFVDFSHIYREANSCED 232
            G +  ++E DSE+  + L      S     L+S    LL R W     HIYRE N   D
Sbjct: 255 YGIRKCILESDSELALSWLRTEPDPSHQFAHLISGCRQLLRRPWTTQMRHIYREGNRVAD 314

[Close]

BLAST of Moc07g05650 vs. NCBI nr
Match: KAG7599981.1 (Reverse transcriptase zinc-binding domain [Arabidopsis suecica])

HSP 1 Score: 99.0 bits (245), Expect = 6.0e-17
Identity = 77/263 (29.28%), Postives = 103/263 (39.16%), Query Frame = 0


Query: 30  ERVRCHLSESAACPYCPDLVESLLHILRDCPRARDLWHGLIPLGLPSCFFD--------- 89
           ER R HLS +  CP C   VE++LHILRDCP    +W  ++P      FFD         
Sbjct: 265 ERSRRHLSSTDVCPVCKGGVETILHILRDCPAMMGIWTRILPPRKRRTFFDKSLLEWVFD 324

Query: 90  ---------EFSFPTMPALIV-RRTASNFVNSWNLVAPFLSKPCRRW------------- 149
                    E ++ TM A+ V     S+   S   V      P   W             
Sbjct: 325 NLSDENEYCESTWATMFAMAVWLHNGSSTSGSRGDVLVGWVMPTDGWIKLNTDGASHGNL 384

Query: 150 --------------SWDVVYN-----------RMWSVFSGLKIAWNVGCKNLLVEVDSEM 209
                          W   ++            +W V+ GL IAW      L +EVDS++
Sbjct: 385 GLATAGGVLRDGYGDWCGGFSLNIGRCTAPLAELWGVYYGLYIAWEKKITRLELEVDSQL 444

Query: 210 VCNILSKGYHYSPFLRQLVSNINHLLSRDWFVDFSHIYREANSCEDWLARWASSATVGCH 236
           V   L  G      L  LV   +  LSRDW V  SH+YREAN   D LA +  S + G H
Sbjct: 445 VVGFLKTGVSEMHPLSFLVRLCHDFLSRDWIVRISHVYREANRLADGLANYTFSLSNGFH 504

[Close]

BLAST of Moc07g05650 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.6e-18
Identity = 76/301 (25.25%), Postives = 109/301 (36.21%), Query Frame = 0


Query: 28  QQERVRCHLSESAACPYCPDLVESLLHILRDCPRARDLWHGLIPLGLPSCFF-------- 87
           ++ER R HLS S  C  C   VES+LH+LRDCP    +W  ++P      FF        
Sbjct: 315 EEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWL 374

Query: 88  ----------DEFSFPTMPALIV-----------------RRTASNFVNSW--------- 147
                     ++  + T+ A+I+                  R    FV  W         
Sbjct: 375 YDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHS 434

Query: 148 -----NLVAPFLSK------PCRRW---------------------------SW------ 207
                 +  P + +      PC  W                           +W      
Sbjct: 435 GNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSL 494

Query: 208 -----DVVYNRMWSVFSGLKIAWNVGCKNLLVEVDSEMVCNILSKGYHYSPFLRQLVSNI 236
                      +W V+ GL  AW      + +EVDSE++   L  G   S  L  LV   
Sbjct: 495 NIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLC 554

[Close]

BLAST of Moc07g05650 vs. ExPASy TrEMBL
Match: A0A6P8C599 (uncharacterized protein LOC116192475 OS=Punica granatum OX=22663 GN=LOC116192475 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-26
Identity = 83/295 (28.14%), Postives = 125/295 (42.37%), Query Frame = 0


Query: 31  RVRCHLSESAACPYCPDLVESLLHILRDCPRARDLWHGLIP-----------------LG 90
           RV  HL+ S  C +C    E++LH+LRDCP  R  W+ L+P                 L 
Sbjct: 115 RVSRHLAVSGLCDFCSSTAETILHVLRDCPGTRSAWYRLVPRNIRDRFFSEPLKPWLMLN 174

Query: 91  LPSC-----------------------FFDEFSFPTMPALIVRRTASNFVNSWNLVAPFL 150
           L SC                       F  +F  P      +R TA NF ++ +L +   
Sbjct: 175 LGSCDEKWSTLFGVACWLLWGWRNKGLFEQDFVRPRDEVRAIRATAHNFEHARDLRSN-T 234

Query: 151 SKPCRRWSW-----------------------------------------DVVYN----- 210
           S+P R W W                                           ++N     
Sbjct: 235 SQPRREWRWIQWRRPPPGWVKVNTDGASRGNPGIAGAGGLLRNDDGHWICGFLHNVGFAT 294

Query: 211 ----RMWSVFSGLKIAWNVGCKNLLVEVDSEMVCNILSKGYHYSPFLRQLVSNINHLLSR 236
                +W    GL++AW+ G +++++E+DS++V  +LS G  ++  L  LVS+I+ +L R
Sbjct: 295 STIAELWGALVGLQLAWDRGYRHVVLELDSQVVQRLLSDGSTHNQCLEPLVSSISDILHR 354

[Close]

BLAST of Moc07g05650 vs. ExPASy TrEMBL
Match: A0A6D2JTC3 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS29811 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.6e-18
Identity = 70/243 (28.81%), Postives = 103/243 (42.39%), Query Frame = 0


Query: 30  ERVRCHLSESAACPYCPDLVESLLHILRDCPRARDLWHGLIPL----------------- 89
           ER R HLS S  C  C    E++LH+LRDCP    +W  ++P+                 
Sbjct: 566 ERQRRHLSTSGVCQVCRGGDETILHVLRDCPAMEGIWRRIVPVRKRDRVQFVKDQTREAT 625

Query: 90  -GLPSCFFDEFSFPTMPALIVR-----------------RTASNFVNSWNLVAPFLSKPC 149
               S   +  +  T    +V                  R  S   ++  ++   L   C
Sbjct: 626 AAHQSVNINSRTRATWIERLVHWVRPSAGWVKVNTDGASRGNSGLASAGGVLRDELGCWC 685

Query: 150 RRWSWDV-----VYNRMWSVFSGLKIAWNVGCKNLLVEVDSEMVCNILSKGYHYSPFLRQ 209
           R ++ ++         +W V+ GL IAW+   + + +EVDSEMV   L  G      L  
Sbjct: 686 RGFALNIGICTAPLAELWGVYYGLCIAWDSKAQRVELEVDSEMVVGFLRTGIEEVHSLSF 745

Query: 210 LVSNINHLLSRDWFVDFSHIYREANSCEDWLARWASSATVGCHGCERSPPGLSPLLIANA 233
           LV   +  LSRDW V  SH+YREAN   D LA +A S   G H     P  + PL + ++
Sbjct: 746 LVRLCHGFLSRDWIVRVSHVYREANRLADGLANYAFSLPSGFHSFTSVPDDVHPLFLEDS 805

[Close]

BLAST of Moc07g05650 vs. ExPASy TrEMBL
Match: A0A2I0I6R1 (RNase H domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_040530 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.6e-18
Identity = 47/126 (37.30%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 116 RWSWDVVYN---------RMWSVFSGLKIAWNVGCKNLLVEVDSEMVCNILSKGYHYSPF 175
           RW    V+N         ++W    GL++AW+ G + +++E+DS++V  +LS     + +
Sbjct: 403 RWICGFVHNVGFATSTIAKLWGALVGLELAWDRGYRYVVLELDSQVVQRLLSNQPPTNSY 462

Query: 176 LRQLVSNINHLLSRDWFVDFSHIYREANSCEDWLARWASSATVGCHGCERSPPGLSPLLI 233
           L  LV+NIN++L RDW V+ SH Y+E+N C DW+ARWA+S ++G +    +P G++ LL 
Sbjct: 463 LDPLVNNINNILYRDWHVEVSHTYQESNMCADWMARWATSFSLGSYFFVATPIGINALLE 522

[Close]

BLAST of Moc07g05650 vs. ExPASy TrEMBL
Match: A0A5B6W412 (Non-LTR retroelement reverse transcriptase-like OS=Gossypium australe OX=47621 GN=EPI10_025909 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-17
Identity = 69/273 (25.27%), Postives = 110/273 (40.29%), Query Frame = 0


Query: 29  QERVRCHLSESAACPYCPDLVESLLHILRDCPRARDLWHGLIPLGLPSCFFDEFSFPTMP 88
           + R R  L+ +A C  C  L E +LH+LRDCP +R LW  ++P  L   FF+  +   + 
Sbjct: 75  ERRARMGLASTAQCERCTTLSEDMLHLLRDCPISRSLWLRMVPTSLQREFFECGTSEWIK 134

Query: 89  ALIVRRTASNFVNSWNLV--------------------APFLSKPCRR-----W-----S 148
           A I+ RT +     WN++                     P  ++P R+     W      
Sbjct: 135 ANILCRTRARHGTEWNVLFAVSLWWLWKWRNESIFQGNDPPRTQPRRQERLISWKPPPSG 194

Query: 149 WDVVYN----------------------------------------RMWSVFSGLKIAWN 208
           W ++                                           + +V+ GLK+AW+
Sbjct: 195 WTLINTDGASRGNPGSAAAAVCLRDDTGKWVARSVTNLGICSAALAEIMAVYQGLKLAWD 254

Query: 209 VGCKNLLVEVDSEMVCNILSKGYHYSPFLRQLVSNINHLLSRDWFVDFSHIYREANSCED 232
            G +  ++E DSE+  + L      S     L+S    LL R W     HIYRE N   D
Sbjct: 255 YGIRKCILESDSELALSWLRTEPDPSHQFAHLISGCRQLLRRPWTTQMRHIYREGNRVAD 314

[Close]

BLAST of Moc07g05650 vs. ExPASy TrEMBL
Match: A0A6P8E5K3 (uncharacterized protein LOC116212324 OS=Punica granatum OX=22663 GN=LOC116212324 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 122  VYNRMWSVFSGLKIAWNVGCKNLLVEVDSEMVCNILSKGYHYSPFLRQLVSNINHLLSRD 181
            V   +W V SGL++AW +G + +L+EVDS +V  +++     +P LR +V  I   L RD
Sbjct: 1093 VVAELWGVLSGLELAWELGYRLVLLEVDSLLVTRLIAGSGPRAPQLRTIVREIRSWLERD 1152

Query: 182  WFVDFSHIYREANSCEDWLARWASSATVGCHGCERSPPGLSPLLIANAMGSPCPAL 238
            W V+ SH YRE NS  DW+ARW+ S  +G H     PP +  LL  + +G+  P L
Sbjct: 1153 WQVEVSHQYREGNSVADWMARWSLSLPLGLHIQHIPPPEVRALLAGDIIGAALPRL 1208

[Close]

BLAST of Moc07g05650 vs. TAIR 10
Match: AT5G61090.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 3.9e-06
Identity = 26/98 (26.53%), Postives = 45/98 (45.92%), Query Frame = 0


Query: 128 SVFSGLKIAWNVGCKNLLVEVDSEMVCNILSKGYHYSPFLRQLVSNINHLLSRDWFVDFS 187
           +++ GLK  W+ G + + +E  S  + N L+         + L+     ++ ++W  D  
Sbjct: 552 AIYQGLKYLWDSGFRRIHLETTSFEIINALTTKSSLFCKSKTLLGACKDMILKEWECDIY 611

Query: 188 HIYREANSCEDWLARWASSATVGCHGCERSPPGLSPLL 226
           HI +E NSC +WLA+ +          E  P GL   L
Sbjct: 612 HISKEQNSCAEWLAKRSEEQPQELVFFEYPPRGLMDFL 649

The following BLAST results are available for this feature:

BLAST of Moc07g05650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031376896.1	5.4e-26	28.14	uncharacterized protein LOC116192475 [Punica granatum]	[more]
PKI39106.1	1.6e-17	37.30	hypothetical protein CRG98_040530 [Punica granatum]	[more]
CAA7042576.1	1.6e-17	28.81	unnamed protein product [Microthlaspi erraticum]	[more]
KAA3475772.1	2.7e-17	25.27	non-LTR retroelement reverse transcriptase-like [Gossypium australe]	[more]
KAG7599981.1	6.0e-17	29.28	Reverse transcriptase zinc-binding domain [Arabidopsis suecica]	[more]

BLAST of Moc07g05650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	9.6e-18	25.25	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Moc07g05650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P8C599	2.6e-26	28.14	uncharacterized protein LOC116192475 OS=Punica granatum OX=22663 GN=LOC116192475...	[more]
A0A6D2JTC3	7.6e-18	28.81	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS29811 ...	[more]
A0A2I0I6R1	7.6e-18	37.30	RNase H domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_040530 PE...	[more]
A0A5B6W412	1.3e-17	25.27	Non-LTR retroelement reverse transcriptase-like OS=Gossypium australe OX=47621 G...	[more]
A0A6P8E5K3	1.4e-16	40.52	uncharacterized protein LOC116212324 OS=Punica granatum OX=22663 GN=LOC116212324...	[more]

BLAST of Moc07g05650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61090.1	3.9e-06	26.53	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 126..210 e-value: 1.1E-9 score: 40.3
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 127..204 e-value: 7.1E-16 score: 58.2
None	No IPR available	PANTHER	PTHR34023:SF2	SUBFAMILY NOT NAMED	coord: 120..206
None	No IPR available	PANTHER	PTHR34023	FAMILY NOT NAMED	coord: 120..206
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 126..202 e-value: 1.51513E-13 score: 63.4872
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 127..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g05650.1	Moc07g05650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity