Moc07g05640 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g05640
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr7: 4705151 .. 4705981 (-)
RNA-Seq ExpressionMoc07g05640
SyntenyMoc07g05640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAAGCCGCCGTCCTCCCACCACAATCTACAACCAATCGCTTTCTCATGGTTGAAGGGGCTGTTGAAAACATTCAAAGGAATGTAGTTGAGATGCGCCAATTGATTGGTATGGTTGTAAGACTGTAGTTTTTTAACCATAGTTAAAGGAGTTGACTCATTCTTCTTACTAGAGTTAACTCACCCACAGTTAGTTAGTTAACTGCTTTTAGTTTCATTGATTTGGTTAAACAAACCAGAAAGGGGTTGGGTTTAAATACCTAAGCTAAACACTACTCGGCAAAACTGTACTTGGTGAATAGTTTCTTTTGATAATAAATAAAAGCTCTCTGATTGACAGTGGATGTAGACATTGAATGTCGAACTACTATAAACATTTTTTGTTATCTCTTCTTCTACCCGTTCTTGCTTTTATCTTACTTGATAGTTAGCTTGATTCCGCAACAAATTGGTATCAGAGCCATTGAAGAAGAAGGTTGGTGCCAAATCTAGTTGGCTTGTTTTCGTTTGAAAATTCTTGAAGCAAAAGGTCAAATTCTTCACTCCTTCTGGTTTCAGTTTTGAGGCTTCATCGATAAAATGTCAGCAAGATTTGAGCTAGAGAAATTTGACGGAAAAGGGGATTTCGGCCTTTGGAAAAAGAAGATGAAGGCGTTACTTGTGCAACAAAAGGTTGCCAAAGCCCTTGATCCAAGTAAGTATTCTGAATCTGTATCTAAAGAAGATAAAGCCGAGAATGCAGAAATTACGTATAGTACAGTGATTTTGTATCTTTCTGACAGTGTTCTTAGAAGGGTGAATGACATAGAAAGTGTTTCTGAACTTTGA

mRNA sequence

ATGGATCAAGCCGCCGTCCTCCCACCACAATCTACAACCAATCGCTTTCTCATGGTTGAAGGGGCTGTTGAAAACATTCAAAGGAATGTAGTTGAGATGCGCCAATTGATTGTTAGCTTGATTCCGCAACAAATTGGTATCAGAGCCATTGAAGAAGAAGGCTTCATCGATAAAATGTCAGCAAGATTTGAGCTAGAGAAATTTGACGGAAAAGGGGATTTCGGCCTTTGGAAAAAGAAGATGAAGGCGTTACTTGTGCAACAAAAGGTTGCCAAAGCCCTTGATCCAAGTAAGTATTCTGAATCTGTATCTAAAGAAGATAAAGCCGAGAATGCAGAAATTACGTATAGTACAGTGATTTTGTATCTTTCTGACAGTGTTCTTAGAAGGGTGAATGACATAGAAAGTGTTTCTGAACTTTGA

Coding sequence (CDS)

ATGGATCAAGCCGCCGTCCTCCCACCACAATCTACAACCAATCGCTTTCTCATGGTTGAAGGGGCTGTTGAAAACATTCAAAGGAATGTAGTTGAGATGCGCCAATTGATTGTTAGCTTGATTCCGCAACAAATTGGTATCAGAGCCATTGAAGAAGAAGGCTTCATCGATAAAATGTCAGCAAGATTTGAGCTAGAGAAATTTGACGGAAAAGGGGATTTCGGCCTTTGGAAAAAGAAGATGAAGGCGTTACTTGTGCAACAAAAGGTTGCCAAAGCCCTTGATCCAAGTAAGTATTCTGAATCTGTATCTAAAGAAGATAAAGCCGAGAATGCAGAAATTACGTATAGTACAGTGATTTTGTATCTTTCTGACAGTGTTCTTAGAAGGGTGAATGACATAGAAAGTGTTTCTGAACTTTGA

Protein sequence

MDQAAVLPPQSTTNRFLMVEGAVENIQRNVVEMRQLIVSLIPQQIGIRAIEEEGFIDKMSARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDPSKYSESVSKEDKAENAEITYSTVILYLSDSVLRRVNDIESVSEL
Homology
[Close]
BLAST of Moc07g05640 vs. NCBI nr
Match: XP_022157856.1 (uncharacterized protein LOC111024471 isoform X3 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 51/83 (61.45%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 59  MSARFELEKFDGKGDFGLWKKKMKALLVQQKVAKAL-DPSKYSESVSKEDKAENAEITYS 118
           M+A+FELE FDGKGDF LWKKKMKALLVQQKVAKAL DPSK + + + E+  E  EI +S
Sbjct: 1   MAAKFELEIFDGKGDFSLWKKKMKALLVQQKVAKALDDPSKLAGAKTAEEIVELQEIAFS 60

Query: 119 TVILYLSDSVLRRVNDIESVSEL 141
           ++IL+L+D+VLR+++D ++  EL
Sbjct: 61  SIILHLADNVLRKIHDAKTAREL 83

[Close]
BLAST of Moc07g05640 vs. NCBI nr
Match: XP_022157854.1 (uncharacterized protein LOC111024471 isoform X1 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-16
Identity = 50/82 (60.98%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 59  MSARFELEKFDGKGDFGLWKKKMKALLVQQKVAKAL-DPSKYSESVSKEDKAENAEITYS 118
           M+A+FELE FDGKGDF LWKKKMKALLVQQKVAKAL DPSK + + + E+  E  EI +S
Sbjct: 1   MAAKFELEIFDGKGDFSLWKKKMKALLVQQKVAKALDDPSKLAGAKTAEEIVELQEIAFS 60

Query: 119 TVILYLSDSVLRRVNDIESVSE 140
           ++IL+L+D+VLR+++D ++  E
Sbjct: 61  SIILHLADNVLRKIHDAKTARE 82

[Close]
BLAST of Moc07g05640 vs. NCBI nr
Match: KAA0050070.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 42/81 (51.85%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 60  SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDPSKYSESVSKEDKAENAEITYSTV 119
           S RFE+ KF+G GDF LW+KK++A+LVQ KVAK LD  +  E++++ +K +  E+TYST+
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEERLPENITESEKRDMDEMTYSTI 62

Query: 120 ILYLSDSVLRRVNDIESVSEL 141
           +LYLSD VLR V++  ++ EL
Sbjct: 63  LLYLSDEVLRLVDEATTIGEL 83

[Close]
BLAST of Moc07g05640 vs. NCBI nr
Match: KAA0067607.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYJ97155.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 6.1e-14
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 60  SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDPSKYSESVSKEDKAENAEITYSTV 119
           S RFE+ KF+G GDF +W+KK++ +LVQ KVAK LD  K  E++++ +K +  E+TYST+
Sbjct: 3   STRFEMSKFNGNGDFAIWRKKIRVILVQHKVAKILDEEKLPENITESEKRDMDEMTYSTI 62

Query: 120 ILYLSDSVLRRVNDIESVSEL 141
           +LYLSD VLR V++  +  EL
Sbjct: 63  LLYLSDEVLRLVDEATTTGEL 83

[Close]
BLAST of Moc07g05640 vs. NCBI nr
Match: PTQ27208.1 (hypothetical protein MARPO_0213s0006 [Marchantia polymorpha] >BBN20345.1 hypothetical protein Mp_8g18390 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-13
Identity = 41/72 (56.94%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 61  ARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDP-SKYSESVSKEDKAENAEITYSTV 120
           A+ E+E+F+GKGDF LW+++MKA+LVQ K++K +DP +K++ES++ EDKAE  E+ YST+
Sbjct: 4   AKMEIERFNGKGDFALWRQRMKAILVQMKISKTIDPEAKHAESITAEDKAEMNELAYSTI 63

Query: 121 ILYLSDSVLRRV 132
            LYL D VLR V
Sbjct: 64  GLYLGDKVLREV 75

[Close]
BLAST of Moc07g05640 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.4e-05
Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = 0 

Query: 62  RFELEKFDGKGDFGLWKKKMKALLVQQKVAKALD-PSKYSESVSKEDKAENAEITYSTVI 121
           ++E+ KF+G   F  W+++M+ LL+QQ + K LD  SK  +++  ED A+  E   S + 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 122 LYLSDSVLRRVND 134
           L+LSD V+  + D
Sbjct: 65  LHLSDDVVNNIID 77

[Close]
BLAST of Moc07g05640 vs. ExPASy TrEMBL
Match: A0A6J1DZD8 (uncharacterized protein LOC111024471 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024471 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.4e-17
Identity = 51/83 (61.45%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 59  MSARFELEKFDGKGDFGLWKKKMKALLVQQKVAKAL-DPSKYSESVSKEDKAENAEITYS 118
           M+A+FELE FDGKGDF LWKKKMKALLVQQKVAKAL DPSK + + + E+  E  EI +S
Sbjct: 1   MAAKFELEIFDGKGDFSLWKKKMKALLVQQKVAKALDDPSKLAGAKTAEEIVELQEIAFS 60

Query: 119 TVILYLSDSVLRRVNDIESVSEL 141
           ++IL+L+D+VLR+++D ++  EL
Sbjct: 61  SIILHLADNVLRKIHDAKTAREL 83

[Close]
BLAST of Moc07g05640 vs. ExPASy TrEMBL
Match: A0A6J1DXR5 (uncharacterized protein LOC111024471 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024471 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.9e-16
Identity = 50/82 (60.98%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 59  MSARFELEKFDGKGDFGLWKKKMKALLVQQKVAKAL-DPSKYSESVSKEDKAENAEITYS 118
           M+A+FELE FDGKGDF LWKKKMKALLVQQKVAKAL DPSK + + + E+  E  EI +S
Sbjct: 1   MAAKFELEIFDGKGDFSLWKKKMKALLVQQKVAKALDDPSKLAGAKTAEEIVELQEIAFS 60

Query: 119 TVILYLSDSVLRRVNDIESVSE 140
           ++IL+L+D+VLR+++D ++  E
Sbjct: 61  SIILHLADNVLRKIHDAKTARE 82

[Close]
BLAST of Moc07g05640 vs. ExPASy TrEMBL
Match: A0A5A7U459 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00520 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.8e-15
Identity = 42/81 (51.85%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 60  SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDPSKYSESVSKEDKAENAEITYSTV 119
           S RFE+ KF+G GDF LW+KK++A+LVQ KVAK LD  +  E++++ +K +  E+TYST+
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILDEERLPENITESEKRDMDEMTYSTI 62

Query: 120 ILYLSDSVLRRVNDIESVSEL 141
           +LYLSD VLR V++  ++ EL
Sbjct: 63  LLYLSDEVLRLVDEATTIGEL 83

[Close]
BLAST of Moc07g05640 vs. ExPASy TrEMBL
Match: A0A5A7VKC2 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00310 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-14
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 60  SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDPSKYSESVSKEDKAENAEITYSTV 119
           S RFE+ KF+G GDF +W+KK++ +LVQ KVAK LD  K  E++++ +K +  E+TYST+
Sbjct: 3   STRFEMSKFNGNGDFAIWRKKIRVILVQHKVAKILDEEKLPENITESEKRDMDEMTYSTI 62

Query: 120 ILYLSDSVLRRVNDIESVSEL 141
           +LYLSD VLR V++  +  EL
Sbjct: 63  LLYLSDEVLRLVDEATTTGEL 83

[Close]
BLAST of Moc07g05640 vs. ExPASy TrEMBL
Match: A0A5A7TUE4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001070 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-14
Identity = 41/81 (50.62%), Postives = 59/81 (72.84%), Query Frame = 0 

Query: 60  SARFELEKFDGKGDFGLWKKKMKALLVQQKVAKALDPSKYSESVSKEDKAENAEITYSTV 119
           S RFE+ KF+G GDF LW+KK++ +LVQ KVAK LD  +  E++++ +K +  E+ YST+
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRVILVQHKVAKILDEERLPENITESEKRDMDEMAYSTI 62

Query: 120 ILYLSDSVLRRVNDIESVSEL 141
           +LYLSD VLR V+D  +  EL
Sbjct: 63  LLYLSDEVLRLVDDATTTGEL 83

The following BLAST results are available for this feature:
BLAST of Moc07g05640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157856.11.3e-1661.45uncharacterized protein LOC111024471 isoform X3 [Momordica charantia][more]
XP_022157854.13.8e-1660.98uncharacterized protein LOC111024471 isoform X1 [Momordica charantia][more]
KAA0050070.11.6e-1451.85putative polyprotein [Cucumis melo var. makuwa][more]
KAA0067607.16.1e-1450.62retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]... [more]
PTQ27208.11.4e-1356.94hypothetical protein MARPO_0213s0006 [Marchantia polymorpha] >BBN20345.1 hypothe... [more]
BLAST of Moc07g05640 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109785.4e-0536.99Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Moc07g05640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DZD86.4e-1761.45uncharacterized protein LOC111024471 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DXR51.9e-1660.98uncharacterized protein LOC111024471 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A5A7U4597.8e-1551.85Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675... [more]
A0A5A7VKC23.0e-1450.62Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
A0A5A7TUE46.6e-1450.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of Moc07g05640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g05640.1Moc07g05640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding