Moc07g04390 (gene) Bitter gourd (OHB3-1) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGGCAATGGTGATGACACAAGATCTCAATAGAGACACCAATTGGTATCCTGATTTCGGAGCCACAAATCATATTACTCATGATGTGGCAATCTCCATATCAGCAATGAAGTCCCGGGTGGTCAGCAGGTTCATACAGCAAATGGAACAGGTTTGCCTATAGTTCATTCTGGCCCTTCTTCTCTTATTTCGCCTACTAATCATATTTTTCATCTAAATAATCTATTACATAACATGTTCCTTCAGTTACAAAGAATCTTATAAGTGTGGGTCAGTTTGCAAGGGATAATAATGTCTTCTTTTAATTTCATTCCTCTTTTTGTCTTGTTAAGGATCAAACAACTGGTATCATCCTACTCCAAGGGATTCTCCATGATGGTTTATACTCTTTCCAGTTGGATGCGTCATCTTCACACTTTAGGGGCACACCGTCCGCACTCAATATCACAACTCCCTCTCCTACTTGCATATGA ATGCAGGCAATGGTGATGACACAAGATCTCAATAGAGACACCAATTGGTATCCTGATTTCGGAGCCACAAATCATATTACTCATGATGTGGCAATCTCCATATCAGCAATGAAGTCCCGGGTGGTCAGCAGGTTCATACAGCAAATGGAACAGGATCAAACAACTGGTATCATCCTACTCCAAGGGATTCTCCATGATGGTTTATACTCTTTCCAGTTGGATGCGTCATCTTCACACTTTAGGGGCACACCGTCCGCACTCAATATCACAACTCCCTCTCCTACTTGCATATGA ATGCAGGCAATGGTGATGACACAAGATCTCAATAGAGACACCAATTGGTATCCTGATTTCGGAGCCACAAATCATATTACTCATGATGTGGCAATCTCCATATCAGCAATGAAGTCCCGGGTGGTCAGCAGGTTCATACAGCAAATGGAACAGGATCAAACAACTGGTATCATCCTACTCCAAGGGATTCTCCATGATGGTTTATACTCTTTCCAGTTGGATGCGTCATCTTCACACTTTAGGGGCACACCGTCCGCACTCAATATCACAACTCCCTCTCCTACTTGCATATGA MQAMVMTQDLNRDTNWYPDFGATNHITHDVAISISAMKSRVVSRFIQQMEQDQTTGIILLQGILHDGLYSFQLDASSSHFRGTPSALNITTPSPTCI Homology
BLAST of Moc07g04390 vs. NCBI nr
Match: KAA0067212.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]) HSP 1 Score: 65.1 bits (157), Expect = 3.9e-07 Identity = 41/125 (32.80%), Postives = 54/125 (43.20%), Query Frame = 0
BLAST of Moc07g04390 vs. NCBI nr
Match: TYJ95829.1 (putative copia-like retrotransposon Hopscotch polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 62.0 bits (149), Expect = 3.3e-06 Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 0
BLAST of Moc07g04390 vs. NCBI nr
Match: KAA0032606.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20879.1 Integrase, catalytic core [Cucumis melo var. makuwa]) HSP 1 Score: 58.2 bits (139), Expect = 4.7e-05 Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Moc07g04390 vs. ExPASy TrEMBL
Match: A0A5A7VFQ6 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00150 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07 Identity = 41/125 (32.80%), Postives = 54/125 (43.20%), Query Frame = 0
BLAST of Moc07g04390 vs. ExPASy TrEMBL
Match: A0A5D3B9Z0 (Putative copia-like retrotransposon Hopscotch polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001150 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06 Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 0
BLAST of Moc07g04390 vs. ExPASy TrEMBL
Match: A0A5D3DC66 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00100 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05 Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Moc07g04390 vs. ExPASy TrEMBL
Match: A0A6J1DYD5 (uncharacterized protein LOC111024658 OS=Momordica charantia OX=3673 GN=LOC111024658 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 7.3e-04 Identity = 19/28 (67.86%), Postives = 26/28 (92.86%), Query Frame = 0
BLAST of Moc07g04390 vs. ExPASy TrEMBL
Match: A0A5D3DDT9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00070 PE=4 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 9.6e-04 Identity = 44/126 (34.92%), Postives = 55/126 (43.65%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
|