Moc07g04390 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g04390
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr7: 3786313 .. 3786787 (-)
RNA-Seq ExpressionMoc07g04390
SyntenyMoc07g04390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGCAATGGTGATGACACAAGATCTCAATAGAGACACCAATTGGTATCCTGATTTCGGAGCCACAAATCATATTACTCATGATGTGGCAATCTCCATATCAGCAATGAAGTCCCGGGTGGTCAGCAGGTTCATACAGCAAATGGAACAGGTTTGCCTATAGTTCATTCTGGCCCTTCTTCTCTTATTTCGCCTACTAATCATATTTTTCATCTAAATAATCTATTACATAACATGTTCCTTCAGTTACAAAGAATCTTATAAGTGTGGGTCAGTTTGCAAGGGATAATAATGTCTTCTTTTAATTTCATTCCTCTTTTTGTCTTGTTAAGGATCAAACAACTGGTATCATCCTACTCCAAGGGATTCTCCATGATGGTTTATACTCTTTCCAGTTGGATGCGTCATCTTCACACTTTAGGGGCACACCGTCCGCACTCAATATCACAACTCCCTCTCCTACTTGCATATGA

mRNA sequence

ATGCAGGCAATGGTGATGACACAAGATCTCAATAGAGACACCAATTGGTATCCTGATTTCGGAGCCACAAATCATATTACTCATGATGTGGCAATCTCCATATCAGCAATGAAGTCCCGGGTGGTCAGCAGGTTCATACAGCAAATGGAACAGGATCAAACAACTGGTATCATCCTACTCCAAGGGATTCTCCATGATGGTTTATACTCTTTCCAGTTGGATGCGTCATCTTCACACTTTAGGGGCACACCGTCCGCACTCAATATCACAACTCCCTCTCCTACTTGCATATGA

Coding sequence (CDS)

ATGCAGGCAATGGTGATGACACAAGATCTCAATAGAGACACCAATTGGTATCCTGATTTCGGAGCCACAAATCATATTACTCATGATGTGGCAATCTCCATATCAGCAATGAAGTCCCGGGTGGTCAGCAGGTTCATACAGCAAATGGAACAGGATCAAACAACTGGTATCATCCTACTCCAAGGGATTCTCCATGATGGTTTATACTCTTTCCAGTTGGATGCGTCATCTTCACACTTTAGGGGCACACCGTCCGCACTCAATATCACAACTCCCTCTCCTACTTGCATATGA

Protein sequence

MQAMVMTQDLNRDTNWYPDFGATNHITHDVAISISAMKSRVVSRFIQQMEQDQTTGIILLQGILHDGLYSFQLDASSSHFRGTPSALNITTPSPTCI
Homology
BLAST of Moc07g04390 vs. NCBI nr
Match: KAA0067212.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-07
Identity = 41/125 (32.80%), Postives = 54/125 (43.20%), Query Frame = 0

Query: 1   MQAMVMTQDLNRDTNWYPDFGATNHITHDV-----------------------------A 60
           M AMV T DLN D+NWYPD GATNH+TH +                             +
Sbjct: 42  MSAMVATPDLNIDSNWYPDSGATNHLTHSLSNLSTGSEYGGGNQIYAANGSGLPITHYGS 101

Query: 61  ISISAMKSRVVSRFIQQMEQDQTTGIILLQGILHDGLYSFQLDASSSHFR----GTPSAL 93
           +S ++      S  +  +  D  TG +LLQG+L+DGLY F +  S          T S  
Sbjct: 102 MSFNSSTLPFKSFTLNNLLHDLDTGQVLLQGLLNDGLYKFTIQPSHKRLHHSDSNTKSVF 161

BLAST of Moc07g04390 vs. NCBI nr
Match: TYJ95829.1 (putative copia-like retrotransposon Hopscotch polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-06
Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 0

Query: 1   MQAMVMTQDLNRDTNWYPDFGATNHITHDVAISISAMKSRVVSRFIQQME---------- 60
           M AMV + DLN D+NWYP+ GATNH+ H+++ ++S          I              
Sbjct: 177 MSAMVASYDLNVDSNWYPNLGATNHLIHNLS-NLSTRSEYGGGHHIYAPNGSDNKVYFEV 236

Query: 61  -------QDQTTGIILLQGILHDGLYSFQLDASSSHFRGTPSALNITTPS 94
                  +DQ TG ILLQG L+DGLY F L   SSH + +  ++  T PS
Sbjct: 237 HPTVCYVKDQETGQILLQGHLYDGLYQFNL--KSSH-QSSLKSVTDTNPS 282

BLAST of Moc07g04390 vs. NCBI nr
Match: KAA0032606.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20879.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-05
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 1   MQAMVMTQDLNRDTNWYPDFGATNHITHDVAISISAMKSRVVSRFIQQMEQDQTTGIILL 60
           M AMV + +LN D+NWYPD  ATNH+ ++     +  +    ++       D+ TG  LL
Sbjct: 11  MAAMVASSNLNMDSNWYPDSAATNHLINNFNNLFTGSEYGGGNQI-----YDRRTGQTLL 70

Query: 61  QGILHDGLYSFQLDASSSHF--------RGTPSALN-ITTPSPT 96
           QG+LH GLY F +    SH+          +P  L+ ++TPSP+
Sbjct: 71  QGLLHGGLYRFNI--IPSHYFPTNNVSPSSSPQVLSVVSTPSPS 107

BLAST of Moc07g04390 vs. ExPASy TrEMBL
Match: A0A5A7VFQ6 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00150 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 41/125 (32.80%), Postives = 54/125 (43.20%), Query Frame = 0

Query: 1   MQAMVMTQDLNRDTNWYPDFGATNHITHDV-----------------------------A 60
           M AMV T DLN D+NWYPD GATNH+TH +                             +
Sbjct: 42  MSAMVATPDLNIDSNWYPDSGATNHLTHSLSNLSTGSEYGGGNQIYAANGSGLPITHYGS 101

Query: 61  ISISAMKSRVVSRFIQQMEQDQTTGIILLQGILHDGLYSFQLDASSSHFR----GTPSAL 93
           +S ++      S  +  +  D  TG +LLQG+L+DGLY F +  S          T S  
Sbjct: 102 MSFNSSTLPFKSFTLNNLLHDLDTGQVLLQGLLNDGLYKFTIQPSHKRLHHSDSNTKSVF 161

BLAST of Moc07g04390 vs. ExPASy TrEMBL
Match: A0A5D3B9Z0 (Putative copia-like retrotransposon Hopscotch polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001150 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 0

Query: 1   MQAMVMTQDLNRDTNWYPDFGATNHITHDVAISISAMKSRVVSRFIQQME---------- 60
           M AMV + DLN D+NWYP+ GATNH+ H+++ ++S          I              
Sbjct: 177 MSAMVASYDLNVDSNWYPNLGATNHLIHNLS-NLSTRSEYGGGHHIYAPNGSDNKVYFEV 236

Query: 61  -------QDQTTGIILLQGILHDGLYSFQLDASSSHFRGTPSALNITTPS 94
                  +DQ TG ILLQG L+DGLY F L   SSH + +  ++  T PS
Sbjct: 237 HPTVCYVKDQETGQILLQGHLYDGLYQFNL--KSSH-QSSLKSVTDTNPS 282

BLAST of Moc07g04390 vs. ExPASy TrEMBL
Match: A0A5D3DC66 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00100 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 1   MQAMVMTQDLNRDTNWYPDFGATNHITHDVAISISAMKSRVVSRFIQQMEQDQTTGIILL 60
           M AMV + +LN D+NWYPD  ATNH+ ++     +  +    ++       D+ TG  LL
Sbjct: 11  MAAMVASSNLNMDSNWYPDSAATNHLINNFNNLFTGSEYGGGNQI-----YDRRTGQTLL 70

Query: 61  QGILHDGLYSFQLDASSSHF--------RGTPSALN-ITTPSPT 96
           QG+LH GLY F +    SH+          +P  L+ ++TPSP+
Sbjct: 71  QGLLHGGLYRFNI--IPSHYFPTNNVSPSSSPQVLSVVSTPSPS 107

BLAST of Moc07g04390 vs. ExPASy TrEMBL
Match: A0A6J1DYD5 (uncharacterized protein LOC111024658 OS=Momordica charantia OX=3673 GN=LOC111024658 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.3e-04
Identity = 19/28 (67.86%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 3   AMVMTQDLNRDTNWYPDFGATNHITHDV 31
           AM+++ D+N+DTNWYPD GATNH+THD+
Sbjct: 238 AMLVSSDINKDTNWYPDSGATNHVTHDL 265

BLAST of Moc07g04390 vs. ExPASy TrEMBL
Match: A0A5D3DDT9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00070 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.6e-04
Identity = 44/126 (34.92%), Postives = 55/126 (43.65%), Query Frame = 0

Query: 1   MQAMVMTQDLNRDTNWYPDFGATNHITHDVAI---------------------------S 60
           M AMV   DLN ++NWYPD GA+NH+TH ++                            S
Sbjct: 204 MSAMVTFYDLNFNSNWYPDSGASNHLTHSLSNLSTGSEYGRGHQIYAANGSDLPLLHHGS 263

Query: 61  ISAMKSRVVSR--FIQQM--------EQDQTTGIILLQGILHDGLYSFQLDASSSHFRGT 90
           +    S V S+  F++ +          DQ TG ILLQ  L DGLY F L   SSH    
Sbjct: 264 LQFTSSFVPSKALFLKNLFHVPSITKNLDQETGQILLQRHLCDGLYQFNL--KSSHQGSM 323

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0067212.13.9e-0732.80retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa][more]
TYJ95829.13.3e-0638.18putative copia-like retrotransposon Hopscotch polyprotein [Cucumis melo var. mak... [more]
KAA0032606.14.7e-0535.58Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20879.1 Integrase, cata... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VFQ61.9e-0732.80Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
A0A5D3B9Z01.6e-0638.18Putative copia-like retrotransposon Hopscotch polyprotein OS=Cucumis melo var. m... [more]
A0A5D3DC662.3e-0535.58Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1DYD57.3e-0467.86uncharacterized protein LOC111024658 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5D3DDT99.6e-0434.92Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g04390.1Moc07g04390.1mRNA