Moc07g03650 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g03650
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDNA-directed DNA polymerase
Locationchr7: 3178883 .. 3182160 (+)
RNA-Seq ExpressionMoc07g03650
SyntenyMoc07g03650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTCAATGATGAACAGGTAATCATCAATGTCCTTGATGCGATGCGTCTACCGGATGAAGTTGAGGAGTGCTCTACAATAGGGGCAATCATGGAGGAACTCCAGCAAATGATAGTGGAAGACTTAGAAGCATATTTGGAGGCCGCAAAAAAAGAAGCAAAAATTGTGCCTGGCTCAAGTTTCCCACAATTTGAGCGTTTTGAGTTTTTGCAGCCAACTATAGCGGATTTGAAAGCCATGCAACCTTCCATCATTGAACCTCCAAAACTGGAGAAGAAACCCCTACCTTCTCATTTGAAATATGCTTATTTGGTTTTAAACGATACTTTGCCAGTTATCATTTCTTCATATTTGTCTAATGAACATGAATATTTGCTTTTGCAGGTTTTGTCTAGGTACAAGAGCGCTATTGGATGGACCATAACGGACATAAAATGAATTACCCCTACTTTTTACATGCATAAAATCATCCTAGAATAAGGAGCCACCAATTCTATCGAGTGCCAAAAGAGGCTTAACCTCAAAATGAAAGAGGTGGTCAAGAAGGAGATCATAAAAATGGTTAGATGCTGGAGTGATCTACCCGGCCATCTCGGATAGTAGCTGGGTTAGCCCGATCCAATGTGTTCCCAAGAAGGGTGGTATGATGGTGATTACAAATGATGACAACGAGAGTTGATCCCAATGAGAACGGTGACTGGTTGGAGAGTGTGTATGGACTACCGTCGGTTAAACAAGGTGACTAGAAAAGACCATTTTCCACTTCCTTTTATTGACCAAATGTTTGATCGTCTTGTAGGGAAAGAATGGTATTGTTTCCTAGACGGGTATTCTGGTTCGAACCAAATTACTATAGCCTCAGAGGATTGAGAAAAGACCACTTTCACGTGTCCCTACGGGACATTTGATTTAAGGAGGATGTCGTTCGGTCTTTGTAACGCTCCAGACACCTTCCAAAGATGCATGACATCGATTTTTTCTGACATGCTAAAAAGAATGGTAAAATATTTATGAATGACTTTTCTGTGTTTGGTGAATCTTTTGAAATCTGATTGCAAAATCTAGACGATGTTTTAAAAAGATGTGAAGAGACTAATCTTGTTCTTAATTGGGAGAAATGTCATTTCATGGTACGTGAAGGTATAGTCCTAGGTCTTAAGATTTTAGGAAAAGGAATTGAGGTTGATAGGGCTAAGATAGACTTGATTGCTAAACTGCCCTCTCCTACAACTGTAAAATGTGTTATAAGTTTCTTAGAACATGCGAGTTTCTACCGCTGTTTTATAAAAGATTTTGCGAAAATTTCTAAACCCTTGTGTCAGTTGTTGGAAGTGGAACGACCCTTTGTTTTTTATGAACATTGTTTGAAAGCTTTTGAGACACTTAAGAATGCACTTAGCTCAGCAGCTATCATAATTGAACCATATTGGAACTTGCCATTTGAACTAATGTGTGATGCAAGTGATTTTGCTGTAGATGCAATTTTGGCTCAACGAAAAGGTAACGTTCTTCATCTTGTTTATTATGCAAGTAAAACTTTGAATAGTAGTAAGTTAAACTATACTGTGACTGAGAAAGAACTTTTGGTTGTCGTTTTTGCATTTGATAAGTTTCGTTCATATTTGATGGGGACTAAAGTGATAGTTTTTACTGATCATTCTGCACTTAAATACTTGACTTGACTAAAGCTAAGCCTAGGTTGATTAGATGGATCTTGTTGCTACAACAGTTTGACTTAGAGATAAAAGATAGAAAAGGAACAGAAAACCAAGTAGCAGATCATTTGTCTAGGCTAGAATCTTCTTTGCAGCATGATAGTTGTGATATTAAGGAGCACTTTGTGGATGAGTATCTTTTAGCTATTTCTAAAGTCCCTTGGTATGCTGATTATGCGAACTATTTGGTTAGCAAAATAATTCCTAACGATTTGAGTAAGCACCAGATAAATAAGTTCTTTTTATGATGTTAGGTTTTATGGATGGGATGAACCTTTCTTGTTTAAACTTGGACCTGACAATATTTTTCGTAGGTGTGTCACTGAGCAAGAACAAAAGACGATTCTAGAGGCGTGCCACAAATCACCATATGGTGGACATTTTGCTGGACATAAAACTGCGGCGAAGGTTTTCCAAAGTGGTTTCTTTTGGCCGTCCCTATTTCGAGATGCTCACATATTTGCTCAAGGTTGTGACCGCTGTCAAAGGTCAAGTAACTTGTTATGGAAACATGAGATGCCCTTAAACCTAATATTGGAAGTAGAACTTTTCGATGTTTGGGGCATCGAATTCATGGGTCCGTTCCCACCTTCATTCGGTAAGAATTATATTATCTTGGCTGTTGATTATGTCTTGAAATGGGTTGAGGCTCTGGCCACCATTACTAATGATGCCAAGGTAGTTTCTCTCTTCTTGCAAAAGGTTATTTTCACTAGATATGGTATACCTAGATGCTTAATTAGTGATGAGAGCACACACTTTTTAAATAGAGCAGTAAGTAATTTATTGAAAAAGTATAACATTCATCTTAAGATTGCTATTGCATATCACCCTTAAATCAATGGACTAGTGGAGATATCAAATAGGGCAATAAAGTCAATTTTAGAGAAGTCTGTGAATGTGAATAGGAAGGACTGGGCTATTAAACTTGATGATGTTTTGTGGGCATATAGAACTACTTATAAAACTTCGTAGGCATGTCTCCATATCACATTATTTTTGGTAAAGCATATCATCTTCCACTAGAGCTAGAACATAGAGTATTTTGGGCTATGCAGAAACAAAATTTTGATTATGTTGCTGTAGGTGAAGCAAGATTGCTCCAGTTACATGAGTTGGATGAGTTTCGTCATTTTTCTTATAAGAATGCCAAGATGTATAACGAACAAACCAAAAAGTGGCATGATGAAAAGATAATTGACAAGAATTTAGAACCTGGAAACTTAGTTTTGCTATTTAATTTATAGATTAAGGTTGTTTCTAGGTAAGCTTAAGTCTAGATGGTCAGGCCCATTCGTAGTTGAACATATTATGGTGAGTATATTGACCTCTGTATTACTGAAAGACCCGTGAAAAAACAATAGAAACAGTCCCTCAAACAGTTTGGGGGCGTTTTTATGTAAAATATTTTTTTTCATTCTTTTGGCGAAATTTTTACATTTTCTTTAAGGCTTTTTTGTGTAGATTCCAAATCTAATCATTTTTTTTTTGTTTTTTTGCATTTGAATTTTGTAGGATCAAGATTTGACCCACGTCAAAATTGCGCCAGACGCAATTTAA

mRNA sequence

ATGAAGGTCAATGATGAACAGGTAATCATCAATGTCCTTGATGCGATGCGTCTACCGGATGAAGTTGAGGAGTGCTCTACAATAGGGGCAATCATGGAGGAACTCCAGCAAATGATAGTGGAAGACTTAGAAGCATATTTGGAGGCCGCAAAAAAAGAAGCAAAAATTGTGCCTGGCTCAAGTTTCCCACAATTTGAGCGTTTTGAGTTTTTGCAGCCAACTATAGCGGATTTGAAAGCCATGCAACCTTCCATCATTGAACCTCCAAAACTGGAGAAGAAACCCCTACCTTCTCATTTGAAATATGCTTATTTGGTTTTAAACGATACTTTGCCAGTTATCATTTCTTCATATTTGTCTAATGAACATGAATATTTGCTTTTGCAGGATCAAGATTTGACCCACGTCAAAATTGCGCCAGACGCAATTTAA

Coding sequence (CDS)

ATGAAGGTCAATGATGAACAGGTAATCATCAATGTCCTTGATGCGATGCGTCTACCGGATGAAGTTGAGGAGTGCTCTACAATAGGGGCAATCATGGAGGAACTCCAGCAAATGATAGTGGAAGACTTAGAAGCATATTTGGAGGCCGCAAAAAAAGAAGCAAAAATTGTGCCTGGCTCAAGTTTCCCACAATTTGAGCGTTTTGAGTTTTTGCAGCCAACTATAGCGGATTTGAAAGCCATGCAACCTTCCATCATTGAACCTCCAAAACTGGAGAAGAAACCCCTACCTTCTCATTTGAAATATGCTTATTTGGTTTTAAACGATACTTTGCCAGTTATCATTTCTTCATATTTGTCTAATGAACATGAATATTTGCTTTTGCAGGATCAAGATTTGACCCACGTCAAAATTGCGCCAGACGCAATTTAA

Protein sequence

MKVNDEQVIINVLDAMRLPDEVEECSTIGAIMEELQQMIVEDLEAYLEAAKKEAKIVPGSSFPQFERFEFLQPTIADLKAMQPSIIEPPKLEKKPLPSHLKYAYLVLNDTLPVIISSYLSNEHEYLLLQDQDLTHVKIAPDAI
Homology
BLAST of Moc07g03650 vs. NCBI nr
Match: XP_030504461.1 (uncharacterized protein LOC115719521 [Cannabis sativa])

HSP 1 Score: 112.1 bits (279), Expect = 4.1e-21
Identity = 69/144 (47.92%), Postives = 91/144 (63.19%), Query Frame = 0

Query: 1   MKVNDEQVIINVLDAMRLPDEVEECSTIGAI-------------MEELQQMIVEDLEAYL 60
           M+VND++V  NV +AMR PDE+EECS +  I              +E     +EDLEA  
Sbjct: 127 MRVNDQKVTFNVFNAMRFPDEIEECSRLSVIDSIVAESFHKKVWKDERVISSLEDLEALS 186

Query: 61  EAAKKEAK-IVPGSSFPQFER-FEFLQPTIADLKAMQPSIIEPPKLEKKPLPSHLKYAYL 120
           E  + +   + P   FP+F+R FE L+   ++ K ++PSI EPPKLE KPLPSHLKYAYL
Sbjct: 187 EDEETQVSWVEPMQPFPKFKRAFESLELKESNFKPLKPSIQEPPKLELKPLPSHLKYAYL 246

Query: 121 VLNDTLPVIISSYLSNEHEYLLLQ 130
             N+TLPVIIS++L  E E LLL+
Sbjct: 247 GENETLPVIISAWLEAETEGLLLE 270

BLAST of Moc07g03650 vs. NCBI nr
Match: XP_022143639.1 (uncharacterized protein LOC111013500 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-19
Identity = 57/79 (72.15%), Postives = 63/79 (79.75%), Query Frame = 0

Query: 1   MKVNDEQVIINVLDAMRLPDEVEECSTIGAIMEELQQMIVEDLEAYLEAAKKEAKIVPGS 60
           MKVNDEQ+  NVLD  RLPDEVE+CS IGAIMEELQ+MIVEDLEA LEAA+KEA ++   
Sbjct: 137 MKVNDEQITFNVLDVRRLPDEVEDCSAIGAIMEELQEMIVEDLEADLEAAEKEAGVI--- 196

Query: 61  SFPQFERFEFLQPTIADLK 80
             P FE FE  QPTIADLK
Sbjct: 197 -LPSFEHFEHFQPTIADLK 211

BLAST of Moc07g03650 vs. NCBI nr
Match: XP_030479560.1 (uncharacterized protein LOC115696816 [Cannabis sativa])

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-18
Identity = 66/144 (45.83%), Postives = 90/144 (62.50%), Query Frame = 0

Query: 1   MKVNDEQVIINVLDAMRLPDEVEECSTIGAI-------------MEELQQMIVEDLEAYL 60
           M+VND+++  NV +AMR PDE+++CS +  I              +E     +EDLEA  
Sbjct: 184 MRVNDQKLTFNVFNAMRFPDEIDKCSRLSVIDSIVAESFHKEVWKDERVINSLEDLEALS 243

Query: 61  EAAK-KEAKIVPGSSFPQFER-FEFLQPTIADLKAMQPSIIEPPKLEKKPLPSHLKYAYL 120
           E  + + A + P   FP+F+R FE L+   ++ K  +PSI EPP+LE KPLPSHLKYAYL
Sbjct: 244 EDEEIQVAWVAPMQPFPKFKRAFESLELKESNFKPPKPSIQEPPELELKPLPSHLKYAYL 303

Query: 121 VLNDTLPVIISSYLSNEHEYLLLQ 130
             N+TLPVIIS+ L  E E LLL+
Sbjct: 304 GDNETLPVIISACLEAEAEGLLLE 327

BLAST of Moc07g03650 vs. NCBI nr
Match: XP_030485610.1 (uncharacterized protein LOC115702304 [Cannabis sativa])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-17
Identity = 66/144 (45.83%), Postives = 87/144 (60.42%), Query Frame = 0

Query: 1   MKVNDEQVIINVLDAMRLPDEVEECSTIGAI-------------MEELQQMIVEDLEAYL 60
           M+VND++V  NV +AMR  DE+EECS +  I              +E     +EDLEA  
Sbjct: 159 MRVNDQKVTFNVFNAMRFQDEIEECSRLSVIDSIVAESFHKKVWKDERVISSLEDLEALS 218

Query: 61  EAAKKE-AKIVPGSSFPQFER-FEFLQPTIADLKAMQPSIIEPPKLEKKPLPSHLKYAYL 120
           E  + + A + P    P+F+R FE L+   ++ K  +PSI EPPKLE KPLPSHLKYAYL
Sbjct: 219 EDEETQVAWVEPMQPSPKFKRSFESLELKESNFKPPKPSIQEPPKLELKPLPSHLKYAYL 278

Query: 121 VLNDTLPVIISSYLSNEHEYLLLQ 130
             N+ LP+IIS+ L  E E LLL+
Sbjct: 279 GENEMLPIIISACLEAEVEGLLLE 302

BLAST of Moc07g03650 vs. NCBI nr
Match: XP_030502183.1 (uncharacterized protein LOC115717351 [Cannabis sativa])

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-16
Identity = 65/144 (45.14%), Postives = 84/144 (58.33%), Query Frame = 0

Query: 1   MKVNDEQVIINVLDAMRLPDEVEECSTIGAI-------------MEELQQMIVEDLEAYL 60
           M+VND++V  NV +AMR PDE+EECS I  I              +E      ++LE   
Sbjct: 260 MRVNDQKVTFNVFNAMRFPDEIEECSRISVIDSIVAEKFHKEACKDEKFISSFDELEDLS 319

Query: 61  EAAKKE-AKIVPGSSFPQFER-FEFLQPTIADLKAMQPSIIEPPKLEKKPLPSHLKYAYL 120
           E    + A + P    P+F++ FE L+   ++ K  +PS  EPPKLE KPLPSHLKYAYL
Sbjct: 320 EDEDNQVAWVEPLQPMPKFKKPFESLELKESNFKPPKPSTQEPPKLELKPLPSHLKYAYL 379

Query: 121 VLNDTLPVIISSYLSNEHEYLLLQ 130
             NDTLPVII+S L  E E  LL+
Sbjct: 380 GENDTLPVIIASNLVVEDEGALLE 403

BLAST of Moc07g03650 vs. ExPASy TrEMBL
Match: A0A6J1CPX1 (uncharacterized protein LOC111013500 OS=Momordica charantia OX=3673 GN=LOC111013500 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.3e-20
Identity = 57/79 (72.15%), Postives = 63/79 (79.75%), Query Frame = 0

Query: 1   MKVNDEQVIINVLDAMRLPDEVEECSTIGAIMEELQQMIVEDLEAYLEAAKKEAKIVPGS 60
           MKVNDEQ+  NVLD  RLPDEVE+CS IGAIMEELQ+MIVEDLEA LEAA+KEA ++   
Sbjct: 137 MKVNDEQITFNVLDVRRLPDEVEDCSAIGAIMEELQEMIVEDLEADLEAAEKEAGVI--- 196

Query: 61  SFPQFERFEFLQPTIADLK 80
             P FE FE  QPTIADLK
Sbjct: 197 -LPSFEHFEHFQPTIADLK 211

BLAST of Moc07g03650 vs. ExPASy TrEMBL
Match: A0A6J1DBX0 (uncharacterized protein LOC111018901 OS=Momordica charantia OX=3673 GN=LOC111018901 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-16
Identity = 52/70 (74.29%), Postives = 56/70 (80.00%), Query Frame = 0

Query: 1   MKVNDEQVIINVLDAMRLPDEVEECSTIGAIMEELQQMIVEDLEAYLEAAKKEAKIVPGS 60
           MKVNDEQV  NVLDAMRLPD+VEECSTIGAIMEELQQMIVEDLEA LE A+KE+  +   
Sbjct: 151 MKVNDEQVTFNVLDAMRLPDDVEECSTIGAIMEELQQMIVEDLEADLEVAEKESTAI--- 210

Query: 61  SFPQFERFEF 71
             PQFE   F
Sbjct: 211 -LPQFELLSF 216

BLAST of Moc07g03650 vs. ExPASy TrEMBL
Match: A0A2G9IA86 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_00577 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.7e-13
Identity = 53/130 (40.77%), Postives = 78/130 (60.00%), Query Frame = 0

Query: 1   MKVNDEQVIINVLDAMRLPDEVEECSTIG---------AIMEELQQMIVEDLEAYLEAAK 60
           M+V D+Q+  NV  AM+ P+E +EC T+          +I + L++ +++ L+   E  +
Sbjct: 494 MRVQDQQITFNVFKAMKFPNESDECFTVSLFDNLAGNESIADPLERALLDLLDEDNEEDR 553

Query: 61  KEAKIVPGSSFPQFERFEFLQPTIADLKAMQPSIIEPPKLEKKPLPSHLKYAYLVLNDTL 120
           +  K + GS + +    E L+ T A  K ++PSI E P LE KPLPSHL Y YL  +DTL
Sbjct: 554 EVVKTLDGSKYFKSRGVESLERT-APSKVLKPSIEESPTLELKPLPSHLCYTYLGESDTL 613

Query: 121 PVIISSYLSN 122
           PVIISS LS+
Sbjct: 614 PVIISSSLSD 622

BLAST of Moc07g03650 vs. ExPASy TrEMBL
Match: A0A2G9HW58 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05567 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.7e-13
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 0

Query: 1   MKVNDEQVIINVLDAMRLPDEVEEC-------------STIGAIMEELQQMIVEDLEAYL 60
           M+V D+Q+I NV +AM+ P+E +EC             S +   ++ L++ +++ L+   
Sbjct: 442 MRVEDQQIIFNVFEAMKFPNESDECFDVSLFDNLVGNESIVEQPLDPLERALLDLLDEKN 501

Query: 61  EAAKKEAKIVPGSSFPQFERFEFLQPTIADLKAMQPSIIEPPKLEKKPLPSHLKYAYLVL 120
           +   +  K +  S + +  R E L+ T    K ++PSI EPP LE KPLPSHL YAYL  
Sbjct: 502 KEDHEVVKTLDASKYFKSRRVESLERTTPS-KVLKPSIEEPPTLELKPLPSHLCYAYLGE 561

Query: 121 NDTLPVIISSYLSN 122
           +DTLPVIISS LS+
Sbjct: 562 SDTLPVIISSSLSD 574

BLAST of Moc07g03650 vs. ExPASy TrEMBL
Match: A0A2G9HYA0 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-12
Identity = 52/134 (38.81%), Postives = 76/134 (56.72%), Query Frame = 0

Query: 1   MKVNDEQVIINVLDAMRLPDEVEECSTIGAI-------------MEELQQMIVEDLEAYL 60
           M+V D+Q+  NV  AM+ P+E +EC  +                ++ L++ +++ L+   
Sbjct: 507 MRVQDQQITFNVFKAMKFPNESDECFAVSLFDKLAGNESIAEPPLDPLERALLDLLDEEN 566

Query: 61  EAAKKEAKIVPGSSFPQFERFEFLQPTIADLKAMQPSIIEPPKLEKKPLPSHLKYAYLVL 120
           E   +  K +  S F +  R E L+ T    K ++PSI +PP LE KPLPSHL YAYL  
Sbjct: 567 EEDLEVVKTLDASKFLKSRRVESLERTTPS-KVLKPSIEDPPTLELKPLPSHLCYAYLGE 626

Query: 121 NDTLPVIISSYLSN 122
           +DTLPVIISS LS+
Sbjct: 627 SDTLPVIISSSLSD 639

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030504461.14.1e-2147.92uncharacterized protein LOC115719521 [Cannabis sativa][more]
XP_022143639.11.3e-1972.15uncharacterized protein LOC111013500 [Momordica charantia][more]
XP_030479560.11.9e-1845.83uncharacterized protein LOC115696816 [Cannabis sativa][more]
XP_030485610.11.6e-1745.83uncharacterized protein LOC115702304 [Cannabis sativa][more]
XP_030502183.11.8e-1645.14uncharacterized protein LOC115717351 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CPX16.3e-2072.15uncharacterized protein LOC111013500 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DBX03.2e-1674.29uncharacterized protein LOC111018901 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A2G9IA865.7e-1340.77DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_005... [more]
A0A2G9HW585.7e-1339.55DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_055... [more]
A0A2G9HYA01.7e-1238.81Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24559:SF373REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATEDcoord: 74..129
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 74..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g03650.1Moc07g03650.1mRNA