Moc07g03530 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g03530
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionrRNA N-glycosidase
Locationchr7: 3086328 .. 3090363 (-)
RNA-Seq ExpressionMoc07g03530
SyntenyMoc07g03530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGACCGACAAGGCTAAGTGTAAAAAGCCTCGGTTCGACCTGGATGGGTTCAATCTGTTCAAACCCGACAGGTTCGACATAAAAAAAACAAAAGTAACCGTCGGTCGTGAGTACTGTCGCACCCACCACCTATAAATAGAGGGCATCATTTCACACTCAGGTATCGAACTTCACCTCGAACTTAATATTGAATCCGACTAGAACTGACTTGAGCATTAGAGAGTTTGCCCTCTTGTGCAGGTTCACTCTTGAGTTCAGGTCAAGCCGGAAGCCGGGTTCGAGCTTGGTTCGTAAAACAGCGTTGTGCAATTCCTTGCATAAACACAGTACTACAACCTATAGAACATATCATGTTCAAGTAAGGTGGTAAGATAATGGTATGTTAATCAAATAAAATATGAAAATAAGAAAAAAAAACAAAGAATGAGATGTTTCAAATATCCCGATAGAACTCGTCTATTTATAAAGATTAATTTATCCGCTGAACAATTGTCCCTACTAAAGAAGTTCCTAACTAATTGAGAAATTCTCTTGGAAAGAAAATTATATATAAAAGAAATTCTAATCCATTAGGAAACTTTTACCATGGTTTTTAGAGCTTGATTATATATTTTTATTTTAAAAATAGCCTAAAAAAATCTATAATTATGGATCTGGAGCCAAAGTATAATATCAGATGTCCAGTTTTCTTTAATTTTGTGAGCTGTGAACTTTCTCTAAAATTATGATTTTAAAGTGCTCTTTTCCATATCTTCAACTAATCACAAAATATTAAATTATAATCAAATTCAAATCTTTAAACATAATTTAATAATAAAATGCAATGAAATATTCGAATTAGAGGTGTATTTTGAATCTTATTCATGTCTCTCCCTTGTTGGGTTTGTAAGGAGAATGCAAACAATATCCGACATTGACTAGTAAAGGAAATAATCATGGGTATATAAGAGATGACAATTATCTCTATTGCTATGAGATTTTTTGGGTGCAATCAAAAGTAAAGCCGTAGAAGTGAATAGAGTATTGTCTCCAACGGAATGAATTATTGCTAATTACCGAATTCTCAACTTAAATTTCATTTGAATGTCAAGATCAAATAGAGTAAATAGAGAAGTAATTCGAATCCTAATTCAATGAAAACAAGAAAACACACTACTATCAAGATATAAGATTGAAAATGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGAGTAAATTCTAGAGCATGAGTTTATCGATATCGCCCTTTAATTCTCCTACAAGTTTAATTGAAGCTAATCTAAACTAAGGTTGTTGACAGGTTCTATCCTATTGACTCGATATTCTTTCTCAAGCAATAACAAATTCTTTGAATAGTAGAGTACCTATATTTCTATGGATACTCACAGATCAAATACTCAAGCATGTAAAATCCAAAGATGCCACCAATTATTGCAAGAATATCTCTATCTCTTGCTCTAATAAAAAGGAGAACTATTCAAGCCTAGCCACTAATCTTGTTTTTTAGACTCGATTTATGACAAAGAGTCAATGTAAAGATTGGTCAAATCCAAACAATGCATTAAGAAAAGAAAAGTTGTCACAGCCAATAAGTTTAGACTAGAAATTAAGTAAATAACGAGGAAAAATAAAGTTTGATAAAAGTGATAGCACATTTTGTGAGCTACTTTTCATGAGATTTATATTGAAATTATTTGTTAGTTTTCGTTTCTCCATCACAAATTTAAGCACATGAGATATTTTGCAGGAATAAAGTATCGGGAGGAAACTAGACATATTTGGATCAAAATGAGAGAAAAATCGGAATCAAAGTGATAAAGATGGAATAAACAACAAGATTTGAAGTAAAAAATCCGAGGAGACATTGCCACGACACTGCCCCAGAGCGCCACAGCGCTCAAAAGTCTAAATTTCGCATTTTTTTTAACAGTGTAGTGTCATGGCCTTGTGTGTAGTGCCATGGCGCTGCCGCGACAACTTTTTATGTAAATAAGGTTGTGCAGCTGCCGAGATGGATGAGTTTGGGAGAAGTTTTTTGGCAGTTTGGCTTTTTAGCCAATTTTGAGAGCAATGAGAACATTGGAGAGCTTAGAAAAGATATTTTCAACGCTCGGGATCGTGGAGGTTGCTTCGGGGACGAACGATTGACACGCCATTTTTGATTTCTTCTTCTCTCCCTTAATTCTTCTAGTTTTGTTATGAACTTCCCATTGTGATTTTATTGTTTTACATTGAATATGAGTAGCTAAACCTCTTATCTTATAGATTGATGTAGTCATGGACTTTATGAATTGATTGTTTAGTTCTCTTGATTGAATGTTTTTTAATGTTTTATTTATGCTTCTCTATGCTCAATGCTTTTAATCTACTGACCATAGATTGATTGATTTTAGAATTGAAATCTTAGCTCAGGAGAGGTGATTTAGAGTTAGAACTGGGATACAATAAAATAAAGAAATACAAGAATTAACGTGAAAAAATCCAAACCGAATAAAAAACAACGGCCCACAATGAAAAATTCACTATGTGAAAAATTATTACAACCACACAGATTTATCTCTCCAACCCCAATTACACAAAACACTCCCAAAAAGCAAATACATGTCATGAGCTAGTTGGAACACACCTCTCTTTTACCTTTTCGTTGTGGGACAACTTCTAGCTCATGGAGCACACTCCATCAATGTACTTTTTCAATATGGGACAAATTCAATTCCACAAGTTTGAATGGTGTGAAATCTCTATAAAAGACCAAGCTTTGATGTCATCCTTGTCCAACACAACTTAAACAAACATGAGACTGTTTGTGGTTTACATTGTAGTGGCTCTTTCTCTTGCCATTAATGGCATTGAGTGCAATCTGAGTCTATCACAGTCTAATTTCTCCATTGACACTTACAAAAGCTTCATTAATAATTTATGCGAACAACTCACCATTGGCGCCTCTTATGGATCAGCAGGAATTCCCATTTTGAAACACTCAGGGCAAATTTGTGAACGCTTCCTTATTGTAATCTCATCAATAGAGACAATGAAACCATAAATCTGACGTAAACATGGAGGATGCTAGATTCACATCATATTGTGCAGCTGACTGATCCTATTTTTTCCAAAACGCTCCGCCGATAGCTTCATATGTTCTCTTCACTAACACCAAACCTTTAAATCCATCGAAAACGCCGGCGGCACAACCAGATCCGAAACTCCCCTTGCAAGCATGCATTTCGGAGCAAGAATCTCCCACTTGTTATTGCATGCTGAAAACTACGTCTCTTCCTCATTTCTTGTGCTGATTCAAATGGTGTTGGAAGTTGCCAAGTTCAAGTTCATCGAGCAGAAGATTATCCATAGCATAATGGATATGGAAGACTTCACTCGTGGCTTTTGAACTCTATCAATGCCCATATGGTGCCATAAGCATGATGCCTATAATAACTATGCCAAACCTAAACAATGAACAATGCTCATTAGCGGTCGAGATGGATTGTATTGATGTATATGGTGTATTTACAGCTGATGGTTTTCATGTGATTTTGTACCTTTGTGGACAACAACGAAATCAACAATGGATGTTTAAGCTTGGAGAATTGGGAACTCTATGGAACCAATTGTAATAATCAACATAGGGCTTCGACACATGTGTTTGGAAGCAACGGATAACGATACTAATGTGTTGTTGAGTATAGTGATGACATTATTATCAATATTCATGAGGTTCCATTTCAAAACTAATTGACAATGAGGGGAGTAGCTCATGTTTATTATAAACCATTGTAAGGTCCCTTTTCTTTTCAATATGGGATCTTTAACAACTATTCGAGTGAACCAGAATCATAACTCGTGTGTGAGCTCTTCTACTGATAGCTCTTCAACACTCATCGACATTCGTAGGTTTGATGGGTCATCAAACAACGTTGGGTTTTCTATACCACAAGGCATGATCTTGAACCCTGGCTATGAAGGGGTGATGGATGTCTATCTCGAAAAGATTGTTTTATCTTCTGCAATTGATAAAGCTAAGGATCAACAATAG

mRNA sequence

ATGCCGACCGACAAGGCTAAGTGTAAAAAGCCTCGGTTCGACCTGGATGGGTTCAATCTGTTCAAACCCGACAGGTTCACTCTTGAGTTCAGGTCAAGCCGGAAGCCGGGTTCGAGCTTGGTTCGTAAAACAGCGTTGTGCAATTCCTTGCATAAACACAGTACTACAACCTATAGAACATATCATGTTCAAGTAAGGTGGTTTGATGGGTCATCAAACAACGTTGGGTTTTCTATACCACAAGGCATGATCTTGAACCCTGGCTATGAAGGGGTGATGGATGTCTATCTCGAAAAGATTGTTTTATCTTCTGCAATTGATAAAGCTAAGGATCAACAATAG

Coding sequence (CDS)

ATGCCGACCGACAAGGCTAAGTGTAAAAAGCCTCGGTTCGACCTGGATGGGTTCAATCTGTTCAAACCCGACAGGTTCACTCTTGAGTTCAGGTCAAGCCGGAAGCCGGGTTCGAGCTTGGTTCGTAAAACAGCGTTGTGCAATTCCTTGCATAAACACAGTACTACAACCTATAGAACATATCATGTTCAAGTAAGGTGGTTTGATGGGTCATCAAACAACGTTGGGTTTTCTATACCACAAGGCATGATCTTGAACCCTGGCTATGAAGGGGTGATGGATGTCTATCTCGAAAAGATTGTTTTATCTTCTGCAATTGATAAAGCTAAGGATCAACAATAG

Protein sequence

MPTDKAKCKKPRFDLDGFNLFKPDRFTLEFRSSRKPGSSLVRKTALCNSLHKHSTTTYRTYHVQVRWFDGSSNNVGFSIPQGMILNPGYEGVMDVYLEKIVLSSAIDKAKDQQ
Homology
[Close]
BLAST of Moc07g03530 vs. NCBI nr
Match: 4Z8S_B (Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd)-Native-1 [Momordica charantia] >4Z9W_B Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd)-Native-2 [Momordica charantia] >4ZBV_B Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd) in complex with benzyl T-antigen [Momordica charantia] >4ZFU_B Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd) in complex with N-acetyl D galactosamine [Momordica charantia] >4ZFW_B Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd) in complex with galactose. [Momordica charantia] >4ZFY_B Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd) in complex with ALPHA-METHYL-D-GALACTOSIDE [Momordica charantia] >4ZGR_B Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd) in complex with T-Antigen. [Momordica charantia] >4ZLB_B Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd) in complex with lactose [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-04
Identity = 33/65 (50.77%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 54  STTTYRTYHVQVRWFDGSSNNVGFSIPQGMILNPGYEGVM-----DVYLEKIVLSSAIDK 113
           S+T   +  + +R  DGS N      PQG I NPGYE VM     DVYL+KIVLSSA DK
Sbjct: 192 SSTDSSSKLIVIRRCDGSINQRWVFTPQGTISNPGYEAVMDVAQNDVYLKKIVLSSATDK 251

[Close]
BLAST of Moc07g03530 vs. NCBI nr
Match: XP_022156703.1 (seed lectin-like [Momordica charantia] >BAH05018.1 galactose-binding type-2 ribosome-inactivating protein [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-04
Identity = 33/65 (50.77%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 54  STTTYRTYHVQVRWFDGSSNNVGFSIPQGMILNPGYEGVM-----DVYLEKIVLSSAIDK 113
           S+T   +  + +R  DGS N      PQG I NPGYE VM     DVYL+KIVLSSA DK
Sbjct: 478 SSTDSSSKLIVIRRCDGSINQRWVFTPQGTISNPGYEAVMDVAQNDVYLKKIVLSSATDK 537

[Close]
BLAST of Moc07g03530 vs. NCBI nr
Match: 4ZA3_B (Structural studies on a non-toxic homologue of type II RIPs from Momordica charantia (bitter gourd)-Native-3 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-04
Identity = 33/65 (50.77%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 54  STTTYRTYHVQVRWFDGSSNNVGFSIPQGMILNPGYEGVM-----DVYLEKIVLSSAIDK 113
           S+T   +  + +R  DGS N      PQG I NPGYE VM     DVYL+KIVLSSA DK
Sbjct: 191 SSTDSSSKLIVIRRCDGSINQRWVFTPQGTISNPGYEAVMDVAQNDVYLKKIVLSSATDK 250

[Close]
BLAST of Moc07g03530 vs. ExPASy TrEMBL
Match: B7X8M2 (rRNA N-glycosidase OS=Momordica charantia OX=3673 GN=MCL1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 33/65 (50.77%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 54  STTTYRTYHVQVRWFDGSSNNVGFSIPQGMILNPGYEGVM-----DVYLEKIVLSSAIDK 113
           S+T   +  + +R  DGS N      PQG I NPGYE VM     DVYL+KIVLSSA DK
Sbjct: 478 SSTDSSSKLIVIRRCDGSINQRWVFTPQGTISNPGYEAVMDVAQNDVYLKKIVLSSATDK 537

The following BLAST results are available for this feature:
BLAST of Moc07g03530 vs. NCBI nr
Match NameE-valueIdentityDescription
4Z8S_B6.1e-0450.77Structural studies on a non-toxic homologue of type II RIPs from Momordica chara... [more]
XP_022156703.16.1e-0450.77seed lectin-like [Momordica charantia] >BAH05018.1 galactose-binding type-2 ribo... [more]
4ZA3_B6.1e-0450.77Structural studies on a non-toxic homologue of type II RIPs from Momordica chara... [more]
BLAST of Moc07g03530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc07g03530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
B7X8M22.9e-0450.77rRNA N-glycosidase OS=Momordica charantia OX=3673 GN=MCL1 PE=1 SV=1[more]
BLAST of Moc07g03530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g03530.1Moc07g03530.1mRNA