Moc07g02930 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g02930
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr7: 2587254 .. 2587799 (+)
RNA-Seq Expression	Moc07g02930
Synteny	Moc07g02930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCGGTGCTCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTCATTAGGGGCAATTTACCACAAGACCCCAAGGAGCGCAGAAGGTTGGCAAGGCAAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCGTTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCCTATACGTCCTCAGAGAAATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGACCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCAACAATTGCCAACGCTACGGAAACATAATCCACCAAGTCGGACATCTAGTCTTAAGGAAGGTCCAAACCCATATGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGACCTGAAAGGAGACGTCCTCGCGCACCCGTGGAATGCGGAGCACCTGAAGCGTTATTATCCTTGA

mRNA sequence

ATGGAGATCGGTGCTCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTCATTAGGGGCAATTTACCACAAGACCCCAAGGAGCGCAGAAGGTTGGCAAGGCAAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCGTTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCCTATACGTCCTCAGAGAAATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGACCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCAACAATTGCCAACGCTACGGAAACATAATCCACCAAGTCGGACATCTAGTCTTAAGGAAGGTCCAAACCCATATGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGACCTGAAAGGAGACGTCCTCGCGCACCCGTGGAATGCGGAGCACCTGAAGCGTTATTATCCTTGA

Coding sequence (CDS)

ATGGAGATCGGTGCTCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTCATTAGGGGCAATTTACCACAAGACCCCAAGGAGCGCAGAAGGTTGGCAAGGCAAGCAGCTCGGTTCGTGGTCCGAGGTGGAGCGTTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCCTATACGTCCTCAGAGAAATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGACCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCAACAATTGCCAACGCTACGGAAACATAATCCACCAAGTCGGACATCTAGTCTTAAGGAAGGTCCAAACCCATATGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGACCTGAAAGGAGACGTCCTCGCGCACCCGTGGAATGCGGAGCACCTGAAGCGTTATTATCCTTGA

Protein sequence

MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLTPEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNIIHQVGHLVLRKVQTHMGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP

Homology

[Close]

BLAST of Moc07g02930 vs. NCBI nr
Match: XP_022143486.1 (uncharacterized protein LOC111013362 [Momordica charantia])

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-61
Identity = 115/127 (90.55%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPI DFIRGN PQDPKERR+LAR+AARFVVR GALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNII 120
           PEEGLYVLREIHEGVCGNHSG RSLSAKVIRQGYYWPTLSQDAKKFVRTC+NCQRYG II
Sbjct: 310 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKKFVRTCDNCQRYGTII 369

Query: 121 HQVGHLV 128
           HQ   L+
Sbjct: 370 HQPPELL 376

[Close]

BLAST of Moc07g02930 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 244.2 bits (622), Expect = 8.7e-61
Identity = 114/127 (89.76%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPI DFIRGN PQDPKERR+LAR+AARFVVRG ALYRRGFSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNII 120
           PEEGLYVLREIHEGVCGNHSG RSLSAKVIRQGYYWPTLSQD KKFVRTC+NCQRYG II
Sbjct: 352 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQGYYWPTLSQDVKKFVRTCDNCQRYGTII 411

Query: 121 HQVGHLV 128
           HQ   L+
Sbjct: 412 HQPPELL 418

[Close]

BLAST of Moc07g02930 vs. NCBI nr
Match: XP_022158219.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-60
Identity = 112/127 (88.19%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPI DFIRGN PQDPKERR+LA + ARFVVR GALYRRGFSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNII 120
           PEEGLYVLRE+HEGVCGNHSG RSLSAKVIRQGYYWPTLSQDAKKFVRTC+NCQRYGN+I
Sbjct: 256 PEEGLYVLREVHEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKKFVRTCDNCQRYGNVI 315

Query: 121 HQVGHLV 128
           HQ   L+
Sbjct: 316 HQPPELL 322

[Close]

BLAST of Moc07g02930 vs. NCBI nr
Match: XP_022142324.1 (uncharacterized protein LOC111012466 [Momordica charantia])

HSP 1 Score: 238.8 bits (608), Expect = 3.6e-59
Identity = 111/127 (87.40%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPI DFIRGN PQDP E R+LAR+AARFVVRGGALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNII 120
           P+EGLYVLREIHEGVCGNHSG RSLSAKVI QGYYWPTLSQDA KFVRTC+NCQRYG II
Sbjct: 310 PKEGLYVLREIHEGVCGNHSGARSLSAKVIPQGYYWPTLSQDANKFVRTCDNCQRYGTII 369

Query: 121 HQVGHLV 128
           HQ   L+
Sbjct: 370 HQPPELL 376

[Close]

BLAST of Moc07g02930 vs. NCBI nr
Match: XP_022156575.1 (uncharacterized protein LOC111023451 [Momordica charantia])

HSP 1 Score: 236.1 bits (601), Expect = 2.4e-58
Identity = 109/127 (85.83%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLT 60
           ME+GAPESSWMDPI DFIRGN PQDPKERR+LAR+ AR VVR GALYRRGFSLPLL+CLT
Sbjct: 250 MEVGAPESSWMDPITDFIRGNSPQDPKERRKLARRTARLVVRDGALYRRGFSLPLLKCLT 309

Query: 61  PEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNII 120
           PEEGLYVLREIHEGVCGNHSG RSLSAKVIRQGYYWPTLSQDAK+FVRTC+NCQRYG II
Sbjct: 310 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKQFVRTCDNCQRYGTII 369

Query: 121 HQVGHLV 128
            Q   L+
Sbjct: 370 RQPPELL 376

[Close]

BLAST of Moc07g02930 vs. ExPASy Swiss-Prot
Match: Q5RBK0 (Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-10
Identity = 42/139 (30.22%), Postives = 61/139 (43.88%), Query Frame = 0


Query: 26  PKERRRLARQAARFVVRGGALYRRGFSLPLLR--CLTPEEGLYVLREIHEGVCGNHSGDR 85
           P ERR + R A +FV +   L+  G      R   ++ EE   VLRE HE   G H G  
Sbjct: 30  PSERRGIRRAAKKFVFKEKKLFYVGKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHG-I 89

Query: 86  SLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNIIHQVGHLVLRKVQTHMGALDPTWE 145
           S +  ++   YYW +++ D K++V  C +CQ   N +       L KV+     +     
Sbjct: 90  SRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPWSLVTVDLM 149

Query: 146 GPFEVKGIVRPGTYILADL 163
           GPF           I+ DL
Sbjct: 150 GPFHTSNRSHVYAVIMTDL 167

[Close]

BLAST of Moc07g02930 vs. ExPASy Swiss-Prot
Match: Q4R6I1 (Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis OX=9541 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-09
Identity = 41/139 (29.50%), Postives = 60/139 (43.17%), Query Frame = 0


Query: 26  PKERRRLARQAARFVVRGGALYRRGFSLPLLR--CLTPEEGLYVLREIHEGVCGNHSGDR 85
           P ER  + R A +FV +   L+  G      R   ++ EE   VLRE HE   G H G  
Sbjct: 30  PSERSGIRRAAKKFVFKDKKLFYVGEDRKQNRLVIVSEEEKKKVLRECHENDSGAHHG-I 89

Query: 86  SLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNIIHQVGHLVLRKVQTHMGALDPTWE 145
           S +  ++   YYW +++ D K++V  C +CQ   N +       L KV+     +     
Sbjct: 90  SRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPWSLVTVDLM 149

Query: 146 GPFEVKGIVRPGTYILADL 163
           GPF           I+ DL
Sbjct: 150 GPFHTSNRSHVYAIIMTDL 167

[Close]

BLAST of Moc07g02930 vs. ExPASy Swiss-Prot
Match: Q9NXP7 (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 PE=1 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-09
Identity = 41/139 (29.50%), Postives = 60/139 (43.17%), Query Frame = 0


Query: 26  PKERRRLARQAARFVVRGGALYRRGFSLPLLR--CLTPEEGLYVLREIHEGVCGNHSGDR 85
           P ER  + R A +FV +   L+  G      R   ++ EE   VLRE HE   G H G  
Sbjct: 30  PSERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHG-I 89

Query: 86  SLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNIIHQVGHLVLRKVQTHMGALDPTWE 145
           S +  ++   YYW +++ D K++V  C +CQ   N +       L KV+     +     
Sbjct: 90  SRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPWSLVTVDLM 149

Query: 146 GPFEVKGIVRPGTYILADL 163
           GPF           I+ DL
Sbjct: 150 GPFHTSNRSHVYAIIMTDL 167

[Close]

BLAST of Moc07g02930 vs. ExPASy Swiss-Prot
Match: Q8K259 (Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus OX=10090 GN=Gin1 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-08
Identity = 41/139 (29.50%), Postives = 59/139 (42.45%), Query Frame = 0


Query: 26  PKERRRLARQAARFVVRGGALYRRGFSLPLLR--CLTPEEGLYVLREIHEGVCGNHSGDR 85
           P ER  + R A +FV +   L+  G      R   ++ EE   VLRE HE   G H G  
Sbjct: 30  PSERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVVVSEEEKKKVLRECHENGPGVHHG-I 89

Query: 86  SLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNIIHQVGHLVLRKVQTHMGALDPTWE 145
           S +  ++  GYYW +++ D K++V  C +CQ   N +       L  V      +     
Sbjct: 90  SRTLTLVESGYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPQQHLPMVGNPWSVVTVDLM 149

Query: 146 GPFEVKGIVRPGTYILADL 163
           GPF           I+ DL
Sbjct: 150 GPFHTSNRSHVYAIIMTDL 167

[Close]

BLAST of Moc07g02930 vs. ExPASy Swiss-Prot
Match: Q66H30 (Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus OX=10116 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.8e-07
Identity = 40/144 (27.78%), Postives = 59/144 (40.97%), Query Frame = 0


Query: 28  ERRRLARQAARFVVRGGALYRRGFSLPLLR--CLTPEEGLYVLREIHEGVCGNHSGDRSL 87
           ER  + R A +FV +   L+  G      R   ++ EE   VLRE HE   G H G  S 
Sbjct: 32  ERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVVVSEEEKKKVLRECHENGPGVHHG-ISR 91

Query: 88  SAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNIIHQVGHLVLRKVQTHMGALDPTWE-- 147
           +  ++   YYW +++ D K++V  C +CQ            V+   Q H+  +   W   
Sbjct: 92  TLTLVESSYYWTSVTNDVKQWVYACQHCQ-------VAKSTVIVAPQQHLSVVGNPWSVV 151

Query: 148 -----GPFEVKGIVRPGTYILADL 163
                GPF           I+ DL
Sbjct: 152 TVDLMGPFHTSSRSHVYAMIMTDL 167

[Close]

BLAST of Moc07g02930 vs. ExPASy TrEMBL
Match: A0A6J1CQD7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.1e-61
Identity = 115/127 (90.55%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPI DFIRGN PQDPKERR+LAR+AARFVVR GALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNII 120
           PEEGLYVLREIHEGVCGNHSG RSLSAKVIRQGYYWPTLSQDAKKFVRTC+NCQRYG II
Sbjct: 310 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKKFVRTCDNCQRYGTII 369

Query: 121 HQVGHLV 128
           HQ   L+
Sbjct: 370 HQPPELL 376

[Close]

BLAST of Moc07g02930 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.2e-61
Identity = 114/127 (89.76%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPI DFIRGN PQDPKERR+LAR+AARFVVRG ALYRRGFSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNII 120
           PEEGLYVLREIHEGVCGNHSG RSLSAKVIRQGYYWPTLSQD KKFVRTC+NCQRYG II
Sbjct: 352 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQGYYWPTLSQDVKKFVRTCDNCQRYGTII 411

Query: 121 HQVGHLV 128
           HQ   L+
Sbjct: 412 HQPPELL 418

[Close]

BLAST of Moc07g02930 vs. ExPASy TrEMBL
Match: A0A6J1DYS0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 9.3e-61
Identity = 112/127 (88.19%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPI DFIRGN PQDPKERR+LA + ARFVVR GALYRRGFSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNII 120
           PEEGLYVLRE+HEGVCGNHSG RSLSAKVIRQGYYWPTLSQDAKKFVRTC+NCQRYGN+I
Sbjct: 256 PEEGLYVLREVHEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKKFVRTCDNCQRYGNVI 315

Query: 121 HQVGHLV 128
           HQ   L+
Sbjct: 316 HQPPELL 322

[Close]

BLAST of Moc07g02930 vs. ExPASy TrEMBL
Match: A0A6J1CL97 (uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012466 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.8e-59
Identity = 111/127 (87.40%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPI DFIRGN PQDP E R+LAR+AARFVVRGGALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPNEHRKLARRAARFVVRGGALYRRGFSLPLLRCLT 309

Query: 61  PEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNII 120
           P+EGLYVLREIHEGVCGNHSG RSLSAKVI QGYYWPTLSQDA KFVRTC+NCQRYG II
Sbjct: 310 PKEGLYVLREIHEGVCGNHSGARSLSAKVIPQGYYWPTLSQDANKFVRTCDNCQRYGTII 369

Query: 121 HQVGHLV 128
           HQ   L+
Sbjct: 370 HQPPELL 376

[Close]

BLAST of Moc07g02930 vs. ExPASy TrEMBL
Match: A0A6J1DQP4 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023451 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.1e-58
Identity = 109/127 (85.83%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIVDFIRGNLPQDPKERRRLARQAARFVVRGGALYRRGFSLPLLRCLT 60
           ME+GAPESSWMDPI DFIRGN PQDPKERR+LAR+ AR VVR GALYRRGFSLPLL+CLT
Sbjct: 250 MEVGAPESSWMDPITDFIRGNSPQDPKERRKLARRTARLVVRDGALYRRGFSLPLLKCLT 309

Query: 61  PEEGLYVLREIHEGVCGNHSGDRSLSAKVIRQGYYWPTLSQDAKKFVRTCNNCQRYGNII 120
           PEEGLYVLREIHEGVCGNHSG RSLSAKVIRQGYYWPTLSQDAK+FVRTC+NCQRYG II
Sbjct: 310 PEEGLYVLREIHEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKQFVRTCDNCQRYGTII 369

Query: 121 HQVGHLV 128
            Q   L+
Sbjct: 370 RQPPELL 376

[Close]

BLAST of Moc07g02930 vs. TAIR 10
Match: ATMG00750.1 (GAG/POL/ENV polyprotein )

HSP 1 Score: 43.1 bits (100), Expect = 2.7e-04
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 89  VIRQGYYWPTLSQDAKKFVRTCNNCQRYGN 119
           V++ G+YWPT  +DA  FV +C+ CQR GN
Sbjct: 35  VLQAGFYWPTTFKDAHGFVSSCDACQRKGN 64

The following BLAST results are available for this feature:

BLAST of Moc07g02930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143486.1	2.3e-61	90.55	uncharacterized protein LOC111013362 [Momordica charantia]	[more]
XP_022136647.1	8.7e-61	89.76	uncharacterized protein LOC111008302 [Momordica charantia]	[more]
XP_022158219.1	1.9e-60	88.19	protein NYNRIN-like [Momordica charantia]	[more]
XP_022142324.1	3.6e-59	87.40	uncharacterized protein LOC111012466 [Momordica charantia]	[more]
XP_022156575.1	2.4e-58	85.83	uncharacterized protein LOC111023451 [Momordica charantia]	[more]

BLAST of Moc07g02930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RBK0	9.4e-10	30.22	Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 P...	[more]
Q4R6I1	3.6e-09	29.50	Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis OX=9541 GN...	[more]
Q9NXP7	4.7e-09	29.50	Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 P...	[more]
Q8K259	1.8e-08	29.50	Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus OX=10090 GN=Gin1 ...	[more]
Q66H30	9.8e-07	27.78	Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus OX=10116 GN=...	[more]

BLAST of Moc07g02930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQD7	1.1e-61	90.55	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1	[more]
A0A6J1C617	4.2e-61	89.76	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1	[more]
A0A6J1DYS0	9.3e-61	88.19	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1	[more]
A0A6J1CL97	1.8e-59	87.40	uncharacterized protein LOC111012466 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1DQP4	1.1e-58	85.83	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023451 PE=4 SV=1	[more]

BLAST of Moc07g02930 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00750.1	2.7e-04	53.33	GAG/POL/ENV polyprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 67..116 e-value: 1.7E-11 score: 44.0
None	No IPR available	GENE3D	1.10.340.70		coord: 25..116 e-value: 1.1E-16 score: 62.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g02930.1	Moc07g02930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity