Moc07g02260 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g02260
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr7: 1788876 .. 1790837 (-)
RNA-Seq ExpressionMoc07g02260
SyntenyMoc07g02260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTCACCGTCGGTCGAATGGATGAACGTCGTCGTCGAGATAGGAGGTTGTCGCCGCCGAATCGTTGTCGTTCGCACGCAGTGGAGTTCGATTCGCACGACAATGGAGCTGGTTTATTTGCGTAGGGAGGGAGGCAAAAATTTTTTAGATAGACACATTTTCGTCGTGAAAATAAAAGTTAGGTTAAAAAAGTAAAGTGAATTTTAATGGCGGGCTGAGCCTAACATTAAAGGCAGATTTAAAATGTCAGGCCTAGCCCGACATTGAAATATAAATTTTAATTTTTTTTTCAATTTAGCGCATTTTTTAACTTGACCAACATTGTTTCCTCTAGTTGTTTTTATCCGACATTAATTCCTCCGTTTTTTTTTTGTCCGAAATTAAAACCCATATTTCTAGTAGTGTGAGGTTGTTTTTAACGTTTGATTTTCAATGTGCTTGACCAACATATTGGAATACTTCTTTATTAGCTTTTGGAAAATTGGAATGAGAATTGTTTGGGTTTAACTTGTTCTAGATCTACTTGAGTTTAGATCGTGGGTACTTATGAATAAGGCTCACCTAGTAAGGCTATAAACTGTGCTGATATGCTGTTGTTTTGCTTTGAAACTTAACATAGCAGAAAATCTGGGCAGTTTAGGAAGATTCCATGTCTGTTTCGCCAGTATATCAACATCATTAATGTTGTAGAATCGTTTACGTGAGCCTAGAAGAAGTCACATAAACTTTTCCTCCTTACCCTTTTAAACATCAGTAGTTAATCTCTTATTTGCACACTTTCCTTTAATCGATTTGGTTTTGCTTGGTTCGGACTTGTTTTTACTCAGCAAATCATTTATGCACTATTTTGTTTGAGTTCCTTTAGTTTTTCTTGTTCAAAATATTTTTGTTAATTTGTTTGTTTTCTTATGTAATTGTTGAAGTGTTTAGTTATCAATTCCTGCGGATACGATCTTTTTATCACTTGCTACCAACGGTTGTGAATACTTGCACAAGGGACATAAATCGTTCAACAAGTTTTTGGTGCCGTTGCCGGGGATTGATTCAACTTTACACATCATATTTTTTCTTAAGAAAGCTTGCGCTATAAAGATTTCTTGTAACTACTGTTTGGTGAATTTTGAAGGTGAATGCGCACGATCTGCAAGGGTTGGAATATCTACTTCAAAACGAGATAGAGCGCACTTTTCATCGCAGAAAAAGAGCACAACGTAGACAGCAAGTAGAAGTTGGCCCTATGTATCCACTATCGAGAAATCCTAACCCTGTGGTTCCCAATCCAGAAGTTGAAAAAGAAATAATGAGGAAGAAGTTGTTTGGGCCGCAGTAGTTCCTCCTCTAAATGTTATTATGTTGGCTGACGATAGAGAGAGAGCTATAAGAGCGTACGCCGCTCCAGAATTCTACGGCTTCAACTCAGTTATAGCAAAACCAAAGGTTGAAGTAAAGACATTTCAGTTGAAACCAGCCATGTTTCAAATGCTCCAAACTGTGGGACAATTTTACGGGCACGCTTCTGATGACCCTCATCTCCATTTAAGGTACTTCATGGAGGTGAGCGATTCATTTAAGATCCAAGGAAGCATTGCAGCTAAAGTTATTTCCCTTTTCATTGAGGGATGGCGCTCGAAATTGGTTAAATTCATTGTCCGCGGAATCCATTTGCATCATGGGATGACTTAGCTGAGAAATTTTCGATGAAGTATTTCCCTCCCAGCAAAAATGCAAAGTTCAGGAGTGAAATTAATAATTTCCAACATAAAACTGAGGAGACAATGAGTGAATCATGAGAAAGATTTAAAGAGCTACTGCGAAGATGCCAACATCATGGCTTGCCTAGGTGCATCCAGATTAAAACTTTTTATAATGGGCTTAATGAGGCTACAAGATTGGTAGTAGATGCATCGGCAAATGAGGCTTTGTTAGCTAAATCATACGATGAGGCTATCTCTAGCTAA

mRNA sequence

ATGGAGGTCACCGTCGGTCGAATGGATGAACGTCGTCGTCGAGATAGGAGGTTGTCGCCGCCGAATCGTTGTCGTTCGCACGCAGTGGAGTTCGATTCGCACGACAATGGAGCTGATCTACTTGAGTTTAGATCGTGGGTACTTATGAATAAGGCTCACCTAGTGAATGCGCACGATCTGCAAGGGTTGGAATATCTACTTCAAAACGAGATAGAGCGCACTTTTCATCGCAGAAAAAGAGCACAACGTAGACAGCAAGTAGAAGTTGGCCCTATAGAGAGAGCTATAAGAGCGTACGCCGCTCCAGAATTCTACGGCTTCAACTCAGTTATAGCAAAACCAAAGGTTGAAGTAAAGACATTTCAGTTGAAACCAGCCATGTTTCAAATGCTCCAAACTGTGGGACAATTTTACGGGCACGCTTCTGATGACCCTCATCTCCATTTAAGGTGCATCCAGATTAAAACTTTTTATAATGGGCTTAATGAGGCTACAAGATTGGTAGTAGATGCATCGGCAAATGAGGCTTTGTTAGCTAAATCATACGATGAGGCTATCTCTAGCTAA

Coding sequence (CDS)

ATGGAGGTCACCGTCGGTCGAATGGATGAACGTCGTCGTCGAGATAGGAGGTTGTCGCCGCCGAATCGTTGTCGTTCGCACGCAGTGGAGTTCGATTCGCACGACAATGGAGCTGATCTACTTGAGTTTAGATCGTGGGTACTTATGAATAAGGCTCACCTAGTGAATGCGCACGATCTGCAAGGGTTGGAATATCTACTTCAAAACGAGATAGAGCGCACTTTTCATCGCAGAAAAAGAGCACAACGTAGACAGCAAGTAGAAGTTGGCCCTATAGAGAGAGCTATAAGAGCGTACGCCGCTCCAGAATTCTACGGCTTCAACTCAGTTATAGCAAAACCAAAGGTTGAAGTAAAGACATTTCAGTTGAAACCAGCCATGTTTCAAATGCTCCAAACTGTGGGACAATTTTACGGGCACGCTTCTGATGACCCTCATCTCCATTTAAGGTGCATCCAGATTAAAACTTTTTATAATGGGCTTAATGAGGCTACAAGATTGGTAGTAGATGCATCGGCAAATGAGGCTTTGTTAGCTAAATCATACGATGAGGCTATCTCTAGCTAA

Protein sequence

MEVTVGRMDERRRRDRRLSPPNRCRSHAVEFDSHDNGADLLEFRSWVLMNKAHLVNAHDLQGLEYLLQNEIERTFHRRKRAQRRQQVEVGPIERAIRAYAAPEFYGFNSVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPHLHLRCIQIKTFYNGLNEATRLVVDASANEALLAKSYDEAISS
Homology
BLAST of Moc07g02260 vs. NCBI nr
Match: XP_022153147.1 (probable serine/threonine-protein kinase PBL11 [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 9.4e-34
Identity = 90/161 (55.90%), Postives = 105/161 (65.22%), Query Frame = 0

Query: 58  HDLQGLEYLLQNEIERTFHRRKRAQRRQQVEVGPI------------------------- 117
           HDLQ LEYLL NEIE TF RR R QRRQQVE  P+                         
Sbjct: 2   HDLQRLEYLLDNEIECTFPRRIREQRRQQVETNPMDQLPRLPNPMVEVVVPAAAPTLNTI 61

Query: 118 ------ERAIRAYAAPEFYGFNSVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPH 177
                 ERAIRAYAA   + F+ VIA P++E + F+LKP MFQMLQTVG+F+G+  +D H
Sbjct: 62  LLADDGERAIRAYAALVLHSFHPVIAGPEIEAERFELKPVMFQMLQTVGKFFGNPCEDSH 121

Query: 178 LHLR-CIQIKTFYNGLNEATRLVVDASANEALLAKSYDEAI 187
           LHLR  ++IK FYNGL+EATRLVVDASAN ALL+KSY EAI
Sbjct: 122 LHLRYFLEIKNFYNGLSEATRLVVDASANRALLSKSYVEAI 162

BLAST of Moc07g02260 vs. NCBI nr
Match: XP_015389226.1 (uncharacterized protein LOC107178482 [Citrus sinensis])

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-18
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 0

Query: 93  ERAIRAYAAPEFYGFNSVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPHLHLRC- 152
           +RAIR YA       +  I +P+VE   F+LKP MFQMLQT+GQF G  ++DPHLHL+  
Sbjct: 6   DRAIRDYAVLTPQVVHPGIVRPEVEAANFELKPMMFQMLQTLGQFNGLPTEDPHLHLKLF 65

Query: 153 IQIKTFYNGLNEATRLVVDASANEALLAKSYDEA 186
           ++++TFYN LN +TRL+VDASAN ALL+KSY EA
Sbjct: 66  LELETFYNELNPSTRLMVDASANGALLSKSYTEA 99

BLAST of Moc07g02260 vs. NCBI nr
Match: XP_030505151.1 (uncharacterized protein LOC115720131 [Cannabis sativa])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-17
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 0

Query: 94  RAIRAYAAPEFYGFNSVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPHLHL---- 153
           RAIR Y AP F   NS I +PK++   F+LKP MFQM+QTVG F G  S+DPHLHL    
Sbjct: 26  RAIREYTAPMFNELNSGIVRPKIQAPQFELKPVMFQMIQTVGLFSGMPSEDPHLHLHSFL 85

Query: 154 --------------------------RCIQIKTFYNGLNEATRLVVDASANEALLAKSYD 186
                                      CI ++TFYNGLN A+++V+DAS N A+ +KSY+
Sbjct: 86  EVSDSFKLQRERFKELLQKCPHHGISHCIHMETFYNGLNVASQMVLDASTNGAIFSKSYN 145

BLAST of Moc07g02260 vs. NCBI nr
Match: XP_017233063.1 (PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-15
Identity = 75/241 (31.12%), Postives = 96/241 (39.83%), Query Frame = 0

Query: 70  EIERTFHRRKRAQRR-QQVEVG----------PI-----------ERAIRAYAAPEFYGF 129
           EIERTF+RR++AQR+ +Q +V           PI           +RAIR YAAP F   
Sbjct: 14  EIERTFNRRRKAQRKIKQTQVAMDDNVNNGDIPIVPRGAFIVDDKDRAIRQYAAPRFEEL 73

Query: 130 NSVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPHLHLR----------------- 186
           NS I +P ++   F+LKP MFQMLQT+GQF G  ++DPHLHLR                 
Sbjct: 74  NSGIIRPNIQATQFELKPVMFQMLQTIGQFSGMPTEDPHLHLRLFMEISDSFKFQGVPED 133

BLAST of Moc07g02260 vs. NCBI nr
Match: XP_017216983.1 (PREDICTED: uncharacterized protein LOC108194534 [Daucus carota subsp. sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-15
Identity = 74/240 (30.83%), Postives = 93/240 (38.75%), Query Frame = 0

Query: 71  IERTFHRRKRAQRR---QQVEVGPI-------------------ERAIRAYAAPEFYGFN 130
           IERTF+RR++AQR+    QV VG                     +RAIR YAAP F   N
Sbjct: 15  IERTFNRRRKAQRKIKQTQVVVGDTVNNGDILIVPAGAFIVDDKDRAIRQYAAPRFEELN 74

Query: 131 SVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPHLHLR------------------ 186
           S I +P ++   F+LKP MFQMLQT+GQF G  ++DPHLHLR                  
Sbjct: 75  SGIIRPNIQATQFELKPVMFQMLQTIGQFSGMPTEDPHLHLRLFMEISDSFKFQGVTEDA 134

BLAST of Moc07g02260 vs. ExPASy TrEMBL
Match: A0A6J1DI54 (probable serine/threonine-protein kinase PBL11 OS=Momordica charantia OX=3673 GN=LOC111020716 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.5e-34
Identity = 90/161 (55.90%), Postives = 105/161 (65.22%), Query Frame = 0

Query: 58  HDLQGLEYLLQNEIERTFHRRKRAQRRQQVEVGPI------------------------- 117
           HDLQ LEYLL NEIE TF RR R QRRQQVE  P+                         
Sbjct: 2   HDLQRLEYLLDNEIECTFPRRIREQRRQQVETNPMDQLPRLPNPMVEVVVPAAAPTLNTI 61

Query: 118 ------ERAIRAYAAPEFYGFNSVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPH 177
                 ERAIRAYAA   + F+ VIA P++E + F+LKP MFQMLQTVG+F+G+  +D H
Sbjct: 62  LLADDGERAIRAYAALVLHSFHPVIAGPEIEAERFELKPVMFQMLQTVGKFFGNPCEDSH 121

Query: 178 LHLR-CIQIKTFYNGLNEATRLVVDASANEALLAKSYDEAI 187
           LHLR  ++IK FYNGL+EATRLVVDASAN ALL+KSY EAI
Sbjct: 122 LHLRYFLEIKNFYNGLSEATRLVVDASANRALLSKSYVEAI 162

BLAST of Moc07g02260 vs. ExPASy TrEMBL
Match: A0A6J1EQ90 (uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC111436411 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.2e-14
Identity = 76/268 (28.36%), Postives = 100/268 (37.31%), Query Frame = 0

Query: 62  GLEYLLQNEIERTFHRRKRAQRR------QQVEVG----------------------PI- 121
           GLE++L  EIERTF RR + +++      QQ+E+G                      PI 
Sbjct: 6   GLEFILDPEIERTFRRRLKKKKKMTEQNIQQIELGAQLNREFENPAMMANQERITANPIH 65

Query: 122 -----ERAIRAYAAPEFYGFNSVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPHL 181
                ERAIRAYA P     N  I +P+++  TF+LKP MFQMLQT+GQF+G   +DPHL
Sbjct: 66  LADDRERAIRAYAHPAVEELNPCIIRPEIQGTTFELKPVMFQMLQTIGQFHGLPLEDPHL 125

Query: 182 HLR--------------------------------------------------------- 186
           HL+                                                         
Sbjct: 126 HLKSFLGVSDSFRFHSDSFRFQGVDKDMIRLSLFPYLLRDGAKSWLNTLAPGTIDSWNSL 185

BLAST of Moc07g02260 vs. ExPASy TrEMBL
Match: A0A6J1DVZ9 (uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024970 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-13
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 93  ERAIRAYAAPEFYGFNSVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPHLHLR 151
           ER IRAYAAP  +GF+ VIA P +E + F+LK  MFQMLQTVGQF+G+ S+DPHLHLR
Sbjct: 39  ERVIRAYAAPAIHGFHPVIAGPAIEAERFELKSIMFQMLQTVGQFFGNPSEDPHLHLR 96

BLAST of Moc07g02260 vs. ExPASy TrEMBL
Match: A0A6J1DX14 (uncharacterized protein LOC111025234 OS=Momordica charantia OX=3673 GN=LOC111025234 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.5e-13
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 0

Query: 92  IERAIRAYAAPEFYGFNSVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPHLHLRC 151
           IE+ IRAYAAP F+ FN VI  P +E   F+LKPAMFQMLQ    F+G AS+DP+ HL+ 
Sbjct: 41  IEQEIRAYAAPAFFDFNPVIVDPIIEADRFELKPAMFQMLQI---FHGLASEDPYRHLQY 100

Query: 152 IQIKTFYNGLNEATRLVVDASANEALLAKSYDEA 186
                  + + E    V+DAS+N+ALL K Y EA
Sbjct: 101 FMQVANSSKVEE---FVIDASSNKALLLKHYAEA 128

BLAST of Moc07g02260 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.8e-13
Identity = 60/195 (30.77%), Postives = 75/195 (38.46%), Query Frame = 0

Query: 94  RAIRAYAAPEFYGFNSVIAKPKVEVKTFQLKPAMFQMLQTVGQFYGHASDDPHLHLR--- 153
           RAIR YAAP F   N  I +P+++   F+LKP MFQMLQTVGQF G  ++DPHLHLR   
Sbjct: 21  RAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTEDPHLHLRSFL 80

Query: 154 ------------------------------------------------------------ 186
                                                                       
Sbjct: 81  EVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNWNDLAEKFLRKYFPPTR 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022153147.19.4e-3455.90probable serine/threonine-protein kinase PBL11 [Momordica charantia][more]
XP_015389226.11.9e-1857.45uncharacterized protein LOC107178482 [Citrus sinensis][more]
XP_030505151.11.2e-1744.26uncharacterized protein LOC115720131 [Cannabis sativa][more]
XP_017233063.11.1e-1531.12PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus][more]
XP_017216983.12.6e-1530.83PREDICTED: uncharacterized protein LOC108194534 [Daucus carota subsp. sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DI544.5e-3455.90probable serine/threonine-protein kinase PBL11 OS=Momordica charantia OX=3673 GN... [more]
A0A6J1EQ905.2e-1428.36uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
A0A6J1DVZ92.6e-1367.24uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DX147.5e-1351.06uncharacterized protein LOC111025234 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
U5CUI29.8e-1330.77Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g02260.1Moc07g02260.1mRNA