Moc07g00610 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g00610
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr7: 386036 .. 388036 (-)
RNA-Seq ExpressionMoc07g00610
SyntenyMoc07g00610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTCCGCAACAGTTATATTCCCTCTACAAATAGAAAGTCGCCACGTGTCCAAAAGAGATTCGAAAGGACTTCTCTGTCAGGTCGAGATCGAACCTAGCAGAGAGGGGGCCAATGTTTGGGGGTAAACTTACCCAGGACACGTGGAGGACCATGATTCGTGTTGGTAGAAATTAGATAAAAATGATTGCTTAGGTCCACCTCGGTCCCGCCGAGGTGAATCGAGTTTGCCCTTTAAAAGATGAAGTATGGGCACCAAAGCTCGACCTGATTGTGGTCCGACCTGCTCGGAACCCGACAGGTACGATATGAGAAAAGACATGTAACCGCCGGTAGTGCGTGCTGTCGGGCCCATTACCTATAAATAGAGAAGTACATTTCGCGCTCAGGTATCGAAGCTGACCTCGAACTAAATAAGGAGTCCGATCTATACTGACTTGAGCGTCGGAGTGTTCGCCCTCTTGTGCAGGTCCACTCTAGTGTTCAGGTCGAAACCGGAGATCGGGTTCGAGCTCGATTCGTGAAGAACCGTTGTGCAGATTCCTGCATAAACAACAAGTACTCTTCGAAGATGATTGGCAAGGGTGACTTATGGCAGGGCATCTATTTGCTAGCTCTTCGGCCGCTGGTTTCCCCGGTTTCCCATACTGTATGCACTAATAGTCATGTTTCCGATACACATGTTTTGAACTGGCACAACAAATTAGGACACCCTTCTTTTACACATTTAAATATTCTGACGAATGTAATGGGTTTTGGTTCCTCTGTTTCAGCTGTTGATTCTTGCTTAGTTTGTCCATTGGCTAAGCAAAAACGGTTATCATTTGTTTCTAATAATAACATTACTGCATCGACTTTTGATCTTTTACATTGTGACACCTGGGGTCCTTTTCAGTCTCCGACATATGCTGGTTACCGTTACTTTCTCACACTTGTTGATGATTTTTCTCGGTATACATGGGTGTTTTTGATGCGGCGTAAGTCTGATTCTCTATCTATTGTGCCTCGGTTTTTTAAGCTCATTGAGACTCAATTTGGGAAAACTATTAAGAAGTTTAGGTCTGATAATGCTCATGAATTGTCCTTCATTGAATTTTTCAAAGTAAATGAGTTATCCATCAGTATTCTTGTGTTGAACAGCCTGAACAAAACTCTGTGGTTGAACGAAAACATCAGCACTTGCTTAACGTAGCTCGGTCTTTATTTTTCCAATCACATGTGCCGATTACTTTTTGGGGAAAATGTGTACTCACTGTTAGTTTTTTTATTAATCGCATTTCATCACGTATTTTGAATTGGCAAACACCTTATGCTCAGACTATATGGCAAAGAGGCTACTTATGATTTTTTGAGAACATTTGGATGTCTCTGTTTTGCCTCTTATTCTCGTGTCAACAGATCTAAATTTCATCCACGAGCTACACCTGCTGTATTTGTTGGATACCCACCAGGAATGAAAGGTTTCTGGTTATCTGACATTGAAAATAAAAAGTTTTTTGTCTGCAGGGATGTTGTTTTTAAGGAATCAATTTTTCCTTTTCATTCCATATCTAGCAAGTGTTGGGGATACTGATCTGTTTTCTGATATTGTATTACCCAAGCCTTTTGATTTGCCTATTGGACATACATCTTCTGATAGGCGTGCTGCACACTTGGATGTTGATGGGGCTGATATTAGGATTGATACTATTCCTACTGCTGGATCTGCTGATAATGTTGTACTTGATGTTTTACCTTCTGCTGCCACTGCTGCCTCTACTGATATTGTTGTTGATGCTTCTGCTGGAGTTGATATTATTTCTCATGATTCCATTGCTGCTGTTGGTATTGATGTTATAGTTCCTCCTTTGGTGGCTCCTACTACTAGTCTTCGTAGGTCTTCTCGGGTACATCAGCCGCCTTGTTACTTGAAAGATCATCACTGCAGCTTACTCACTTCCAGCCCTTTGCCTTCTACGGGTTCTCGGTTTCCTATACAAAACCATTTGACTTATGATTGA

mRNA sequence

ATGTATTCCGCAACAGTTATATTCCCTCTACAAATAGAAAGTCGCCACGTGTCCAAAAGAGATTCGAAAGGACTTCTCTGTCAGGTCCACCTCGGTCCCGCCGAGGTGAATCGAGTTTGCCCTTTAAAAGATGAAGTATGGGCACCAAAGCTCGACCTGATTGTGGTCCACTCTAGTGTTCAGGTCGAAACCGGAGATCGGGTTCGAGCTCGATTCGTGAAGAACCGTTGTGCAGATTCCTGCATAAACAACAAGTACTCTTCGAAGATGATTGGCAAGGGTGACTTATGGCAGGGCATCTATTTGCTAGCTCTTCGGCCGCTGGTTTCCCCGGTTTCCCATACTGTATGCACTAATACAAGTGTTGGGGATACTGATCTGTTTTCTGATATTGTATTACCCAAGCCTTTTGATTTGCCTATTGGACATACATCTTCTGATAGGCGTGCTGCACACTTGGATGTTGATGGGGCTGATATTAGGATTGATACTATTCCTACTGCTGGATCTGCTGATAATGTTGTACTTGATGTTTTACCTTCTGCTGCCACTGCTGCCTCTACTGATATTGTTGTTGATGCTTCTGCTGGAGTTGATATTATTTCTCATGATTCCATTGCTGCTGTTGGTATTGATGTTATAGTTCCTCCTTTGGTGGCTCCTACTACTAGTCTTCGTAGGTCTTCTCGGGTACATCAGCCGCCTTGTTACTTGAAAGATCATCACTGCAGCTTACTCACTTCCAGCCCTTTGCCTTCTACGGGTTCTCGGTTTCCTATACAAAACCATTTGACTTATGATTGA

Coding sequence (CDS)

ATGTATTCCGCAACAGTTATATTCCCTCTACAAATAGAAAGTCGCCACGTGTCCAAAAGAGATTCGAAAGGACTTCTCTGTCAGGTCCACCTCGGTCCCGCCGAGGTGAATCGAGTTTGCCCTTTAAAAGATGAAGTATGGGCACCAAAGCTCGACCTGATTGTGGTCCACTCTAGTGTTCAGGTCGAAACCGGAGATCGGGTTCGAGCTCGATTCGTGAAGAACCGTTGTGCAGATTCCTGCATAAACAACAAGTACTCTTCGAAGATGATTGGCAAGGGTGACTTATGGCAGGGCATCTATTTGCTAGCTCTTCGGCCGCTGGTTTCCCCGGTTTCCCATACTGTATGCACTAATACAAGTGTTGGGGATACTGATCTGTTTTCTGATATTGTATTACCCAAGCCTTTTGATTTGCCTATTGGACATACATCTTCTGATAGGCGTGCTGCACACTTGGATGTTGATGGGGCTGATATTAGGATTGATACTATTCCTACTGCTGGATCTGCTGATAATGTTGTACTTGATGTTTTACCTTCTGCTGCCACTGCTGCCTCTACTGATATTGTTGTTGATGCTTCTGCTGGAGTTGATATTATTTCTCATGATTCCATTGCTGCTGTTGGTATTGATGTTATAGTTCCTCCTTTGGTGGCTCCTACTACTAGTCTTCGTAGGTCTTCTCGGGTACATCAGCCGCCTTGTTACTTGAAAGATCATCACTGCAGCTTACTCACTTCCAGCCCTTTGCCTTCTACGGGTTCTCGGTTTCCTATACAAAACCATTTGACTTATGATTGA

Protein sequence

MYSATVIFPLQIESRHVSKRDSKGLLCQVHLGPAEVNRVCPLKDEVWAPKLDLIVVHSSVQVETGDRVRARFVKNRCADSCINNKYSSKMIGKGDLWQGIYLLALRPLVSPVSHTVCTNTSVGDTDLFSDIVLPKPFDLPIGHTSSDRRAAHLDVDGADIRIDTIPTAGSADNVVLDVLPSAATAASTDIVVDASAGVDIISHDSIAAVGIDVIVPPLVAPTTSLRRSSRVHQPPCYLKDHHCSLLTSSPLPSTGSRFPIQNHLTYD
Homology
BLAST of Moc07g00610 vs. NCBI nr
Match: XP_022150388.1 (uncharacterized protein LOC111018564 isoform X1 [Momordica charantia] >XP_022150389.1 uncharacterized protein LOC111018564 isoform X1 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-04
Identity = 55/173 (31.79%), Postives = 76/173 (43.93%), Query Frame = 0

Query: 126 DLFSDIVLPKPFDL---PIGHTSSDRRAAHLDVDGADI---------RIDTIPTAGSADN 185
           D F D VLPK FD    P G +S    A++L     D+             I  A +A  
Sbjct: 63  DPFPDFVLPKAFDFVSSPSGVSSLPHNASNLHSPAVDVTPTNAWTHDMASPIHNATTAYV 122

Query: 186 VVLDVLPS-AATAASTDIVVDASAGVDI--------ISHDSIAAVGIDV---IVPPL--- 245
           V     PS  A     D VVD      +        +  +S+    +D+   +VP +   
Sbjct: 123 VNNSNFPSFTAVILHDDHVVDVPFAAIVENSNVPSAVIENSVVPSAVDIKTSVVPSVVMP 182

Query: 246 ----------VAPTTSLRRSSRVHQPPCYLKDHHCSLLTSSPLPSTGSRFPIQ 262
                     V P+TS+RRS R  +PP YLKD+HC+LL S+ LP   SR+P+Q
Sbjct: 183 VDPWIQQSISVIPSTSVRRSQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQ 235

BLAST of Moc07g00610 vs. NCBI nr
Match: XP_022143573.1 (uncharacterized protein LOC111013441 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-04
Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 0

Query: 128 FSDIVLPKPFDLPIGHTSSDRRAAHLDVDGADIRID-TIPTAGSADNVVLD-----VLPS 187
           F D+VLP   D  I     D  A H+D+  ADI I   +PT   +  V ++      +PS
Sbjct: 431 FPDLVLPNVIDFQI-----DMPADHIDMTNADIDIPAVVPTTIISPTVPIEPCAPATVPS 490

Query: 188 AATAASTDIVVDASAGVDIISHDSIAAVGIDVIVPPLVAPTTSLRRSSRVHQPPCYLKDH 247
           A  ++ST +V +            ++  G   IVP  + P    RRS+R  + P YL+D 
Sbjct: 491 ADGSSSTPVVSEPMPNTAPSVSTPMSNTG-SSIVPLDIVP----RRSTRPSKMPSYLQDF 550

Query: 248 HCSLLTSSPLPSTGS-RFPIQNHLTY 267
           HCSLLT+S LPS  S R P+Q +L+Y
Sbjct: 551 HCSLLTNS-LPSPASTRHPLQQYLSY 565

BLAST of Moc07g00610 vs. NCBI nr
Match: XP_022150391.1 (uncharacterized protein LOC111018564 isoform X3 [Momordica charantia] >XP_022150392.1 uncharacterized protein LOC111018564 isoform X3 [Momordica charantia] >XP_022150393.1 uncharacterized protein LOC111018564 isoform X3 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-04
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 219 VAPTTSLRRSSRVHQPPCYLKDHHCSLLTSSPLPSTGSRFPIQ 262
           V P+TS+RRS R  +PP YLKD+HC+LL S+ LP   SR+P+Q
Sbjct: 84  VIPSTSVRRSQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQ 126

BLAST of Moc07g00610 vs. NCBI nr
Match: KAA8550199.1 (hypothetical protein F0562_001883 [Nyssa sinensis])

HSP 1 Score: 55.8 bits (133), Expect = 6.4e-04
Identity = 52/159 (32.70%), Postives = 77/159 (48.43%), Query Frame = 0

Query: 113 SHTVCTNTSVGDTDLFSDIVLPKPFDLPIGHTSSDRRAAHLDVDGADIRIDTIPTAGSAD 172
           S T C    V  TD F D+VLP          SS +    LD+  + +    + +   AD
Sbjct: 308 SQTNCLADQV--TDPFPDLVLPH---------SSLQAYFILDLASSHVHDPPVTSGVPAD 367

Query: 173 NVVLDVLPSAATAASTDIVVDASAGVDIISHDSIAAVGIDVIVPPLVAPTTS----LRRS 232
                 LP     +++ IV  +      ++  S   + +D I  P +AP TS    LR+S
Sbjct: 368 ------LPIDRPDSNSPIVSSSGPSPSGVASTSATIIPVDDI--PALAPYTSGGVVLRKS 427

Query: 233 SRVHQPPCYLKDHHCSLLT-SSPLPSTGSRFPIQNHLTY 267
           +RV  PP YLKD+HC+LL  SS   ST + +PI N+++Y
Sbjct: 428 TRVIHPPNYLKDYHCNLLAGSSTYASTSASYPISNYISY 447

BLAST of Moc07g00610 vs. ExPASy TrEMBL
Match: A0A6J1D9X8 (uncharacterized protein LOC111018564 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018564 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.3e-05
Identity = 55/173 (31.79%), Postives = 76/173 (43.93%), Query Frame = 0

Query: 126 DLFSDIVLPKPFDL---PIGHTSSDRRAAHLDVDGADI---------RIDTIPTAGSADN 185
           D F D VLPK FD    P G +S    A++L     D+             I  A +A  
Sbjct: 63  DPFPDFVLPKAFDFVSSPSGVSSLPHNASNLHSPAVDVTPTNAWTHDMASPIHNATTAYV 122

Query: 186 VVLDVLPS-AATAASTDIVVDASAGVDI--------ISHDSIAAVGIDV---IVPPL--- 245
           V     PS  A     D VVD      +        +  +S+    +D+   +VP +   
Sbjct: 123 VNNSNFPSFTAVILHDDHVVDVPFAAIVENSNVPSAVIENSVVPSAVDIKTSVVPSVVMP 182

Query: 246 ----------VAPTTSLRRSSRVHQPPCYLKDHHCSLLTSSPLPSTGSRFPIQ 262
                     V P+TS+RRS R  +PP YLKD+HC+LL S+ LP   SR+P+Q
Sbjct: 183 VDPWIQQSISVIPSTSVRRSQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQ 235

BLAST of Moc07g00610 vs. ExPASy TrEMBL
Match: A0A6J1CR17 (uncharacterized protein LOC111013441 OS=Momordica charantia OX=3673 GN=LOC111013441 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.3e-05
Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 0

Query: 128 FSDIVLPKPFDLPIGHTSSDRRAAHLDVDGADIRID-TIPTAGSADNVVLD-----VLPS 187
           F D+VLP   D  I     D  A H+D+  ADI I   +PT   +  V ++      +PS
Sbjct: 431 FPDLVLPNVIDFQI-----DMPADHIDMTNADIDIPAVVPTTIISPTVPIEPCAPATVPS 490

Query: 188 AATAASTDIVVDASAGVDIISHDSIAAVGIDVIVPPLVAPTTSLRRSSRVHQPPCYLKDH 247
           A  ++ST +V +            ++  G   IVP  + P    RRS+R  + P YL+D 
Sbjct: 491 ADGSSSTPVVSEPMPNTAPSVSTPMSNTG-SSIVPLDIVP----RRSTRPSKMPSYLQDF 550

Query: 248 HCSLLTSSPLPSTGS-RFPIQNHLTY 267
           HCSLLT+S LPS  S R P+Q +L+Y
Sbjct: 551 HCSLLTNS-LPSPASTRHPLQQYLSY 565

BLAST of Moc07g00610 vs. ExPASy TrEMBL
Match: A0A6J1DBD0 (uncharacterized protein LOC111018564 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111018564 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 219 VAPTTSLRRSSRVHQPPCYLKDHHCSLLTSSPLPSTGSRFPIQ 262
           V P+TS+RRS R  +PP YLKD+HC+LL S+ LP   SR+P+Q
Sbjct: 84  VIPSTSVRRSQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQ 126

BLAST of Moc07g00610 vs. ExPASy TrEMBL
Match: A0A5J5C4X6 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_001883 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-04
Identity = 52/159 (32.70%), Postives = 77/159 (48.43%), Query Frame = 0

Query: 113 SHTVCTNTSVGDTDLFSDIVLPKPFDLPIGHTSSDRRAAHLDVDGADIRIDTIPTAGSAD 172
           S T C    V  TD F D+VLP          SS +    LD+  + +    + +   AD
Sbjct: 308 SQTNCLADQV--TDPFPDLVLPH---------SSLQAYFILDLASSHVHDPPVTSGVPAD 367

Query: 173 NVVLDVLPSAATAASTDIVVDASAGVDIISHDSIAAVGIDVIVPPLVAPTTS----LRRS 232
                 LP     +++ IV  +      ++  S   + +D I  P +AP TS    LR+S
Sbjct: 368 ------LPIDRPDSNSPIVSSSGPSPSGVASTSATIIPVDDI--PALAPYTSGGVVLRKS 427

Query: 233 SRVHQPPCYLKDHHCSLLT-SSPLPSTGSRFPIQNHLTY 267
           +RV  PP YLKD+HC+LL  SS   ST + +PI N+++Y
Sbjct: 428 TRVIHPPNYLKDYHCNLLAGSSTYASTSASYPISNYISY 447

BLAST of Moc07g00610 vs. ExPASy TrEMBL
Match: A0A2Z6N9Y5 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_367060 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.9e-04
Identity = 53/187 (28.34%), Postives = 84/187 (44.92%), Query Frame = 0

Query: 82  INNKYSSKMIGKGDLWQGIYLL---ALRPLVSPVSHTV-CTNTSVGDTDLFSDIVLPKPF 141
           I++  S KMIG  +L QG+Y+L   ++ P++SP +H V     ++   + F     P   
Sbjct: 462 IHDSSSQKMIGVAELNQGLYVLTKPSVTPMLSPPTHGVNKIYQTINSVEKF-----PSFL 521

Query: 142 DLPIGHTSSDRRAAHLDVDGADIRIDT--IPTAGSADNV---VLDVLPSAATAASTDIVV 201
           D+    T  +  ++ L         DT  I T+ S  N+   V DVLPS           
Sbjct: 522 DIQATVTDPNISSSQLPNSNPSDISDTLSINTSNSPSNMTPHVNDVLPST---------- 581

Query: 202 DASAGVDIISHDSIAAVGIDVIVPPLVAPTTSLRRSSRVHQPPCYLKDHHCSLLTSSPLP 260
                    SH        D  +P  +  TT +R+S+R+ QPP  LKD+HC  ++++  P
Sbjct: 582 ---------SHSQ------DTSLPVHIPLTTDIRKSTRISQPPQKLKDYHCYNVSTTVSP 618

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150388.11.3e-0431.79uncharacterized protein LOC111018564 isoform X1 [Momordica charantia] >XP_022150... [more]
XP_022143573.11.3e-0436.30uncharacterized protein LOC111013441 [Momordica charantia][more]
XP_022150391.12.9e-0458.14uncharacterized protein LOC111018564 isoform X3 [Momordica charantia] >XP_022150... [more]
KAA8550199.16.4e-0432.70hypothetical protein F0562_001883 [Nyssa sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D9X86.3e-0531.79uncharacterized protein LOC111018564 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CR176.3e-0536.30uncharacterized protein LOC111013441 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DBD01.4e-0458.14uncharacterized protein LOC111018564 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A5J5C4X63.1e-0432.70Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0... [more]
A0A2Z6N9Y56.9e-0428.34Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_367060 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g00610.1Moc07g00610.1mRNA