Moc07g00070 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g00070
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr7: 32036 .. 35430 (+)
RNA-Seq Expression	Moc07g00070
Synteny	Moc07g00070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGATCCGATCAGGGACTTCTTAAAAGGCGATGTCCCAGTAGACCCAAAGGAAGCAAAGAGAATGACGTGGAGAGTAGCCCGGTACCTGCTGATGGGATGTGAATCCCGGAGCAGAAGCGAATCATCGTTCATCAATTTTGAGAAACAAAATCAAAAGTTCAAAGATGTGAAAAATACAGGGGAAAAAATTTTCCCTTACCTTTGTAGAACTTTTCTTCAATGGTTTAACCAACGAACACCATTTATAGACCTTCTGTGTTATCCTCTGGGTACCGGAAATGGGCTTATAGGAGCAATTCATTTGGAATGTGAGGGAGAAATCAAAGAGAGAGCTTGAGAGCTTCAAGAGAAAATGTTTGGAGTCCCTTTGTTATTCCTTGTCCTATTTGGCAAAACTGCAAAACTCAATAACAAAGACAGTGACGTGGGGAGTTACCCCACGTCACTTAACTGCCCATTCCCCTACAATTTTGCAGGGGAGTTAAATATTAATTTATATATTAATATTATTAATTAATAATAATAATTAATATATATATATTTAATTAATCATATTAATTAATTATTAATCTTATTAATAATTAATTAATATATATACGCATATATATAAATCAAATAAATAATTAACATTTAATTATTAATTACAAAAATAGAATCATATTTTATATCCTTTCTCTCGTATAACCTATAGTTGTAATGTACATCTTATACACATTATTTTTTAACCTATAGGTTTAATATGAATCATATTCATATTAATTTTATTTGAATCTCATCCAAATAATTTCTATCATAATATAGTTTCAATTTAGAATTAACTATATATTATAATGTATCAATATACATATATTCCTTGAGCAATTTGAACAATTCAAATTCTTCCAAAAACTTGATCCTTGTTTTACCCGTTATGAGCTAGCAAGAGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGATTAATCGGTCAAATTCATTGATCCAGTTAATCAACGTTCGTTAACTACGGGTCACTCCACTAAAGACCCACAGCTGCACTCTTCTCACTGCAGAATATTTTCGTGTCCACGGATATACAACCATTAATGACAAGTCAATTTTTAAAGCGAAAGCGACAACATAATCTTAATGAAAATCGATAAACGGGAATTCATTTCCTAATAATGAGCCATGCTGGTAACAGCAAATGGTTCATAACCTCATCAAAATAGGAGTATGGTATATCCGACGAGACGACAACACGCTTGGACAAGTAATGCGATGAATCGTACCTGTATCTCTAGGCGCTATGATATCTTATTATATGGATCATGTCTTCCTTTTCGGGTTCCAAACCTCCCCCTTCTCTAATAGGGGAAAGTACAGACCCACACCTAGGGATATACAAGCGTCATTCTTCAGATGGATCGTTGTTTGATAGTTATTGTAGCCAAGATAAGCAGGCACGAACTTCCGTATAGCGCCCTAGTTTGTTAGATGTTCGTAACTCAAGTTGGGTCAAATTACTGTTTTACCCCTGAGTTACATCTTACTCCTTAAATGCCACTGTTCCTCTAATGAACAACCCGGTTATGGTCCGACCAATAACTGGAAGTCTCTCTCGGACTAATGAGAGGGTGGGGCCCCTTGTTCAAGTTCCTGAGTCAGTATTTAAAAGAACACTCATCTACTCCCTTAAAGTTGGGGATGAATGAATTCTATCTTCTGAAGTTACGTTCCTAGCTCCCCACTCAGTCTCGTCCCCAAAATGGTAGGAATATTGAGTTGGCAACTCGGGCCACTCTCACTCATACAAATCAAATGACGAGCCCTCACGGACAGGAGTCCATAACTCACTCAGGATTGAGAATGAGTTGTCTGGTCATCATATGAAATACCAATCTGTTAGTTAACGGCGTTACATCTAAAGATTGGCTATTTTGCATTCCGGTCTTATACAAAATTATTGTATAGGATACCCCCACTCACATTTCTCCACATGAATGACCTGCATCGAGTTGTCTGTAACATTTACAGAGTGTGCCGTATCCATAGTGTTGCCAGGATAAGGTACCCAGCTTATCCATATACTATTGACCCTTTAGGTTATTCACGGGACATTATCCACTTGTATATCGGGGGTATATATCAAATATATACCTCGTATATCAGGGGTATATCAATTATATACCAAGTATATCAAATATATACTCAATATATATACTGTCCCGGTTACATGATAATAACATTGGATGTTTAGTTTATTGGATTTTGGACAATGCAATGCTATGAATTCAACAACAAATTTATTGAATAAAACTTTATTGAATATACATTTATTTCTACATAAATACAAACTACGAGTTTAGGGCAACACACCGAACACCTGCTCCGAGATGGAACAATGTACCGGCGTGGGTTCTCCTTACCCCTTCTCAAATGCATTTCAAAAGAAGATAGAAATTAAGTTCTTAGGGAAGTGCATGAAGGGGTCTGTGGCAATCATTTGGGGGCCAGGTCATTATCAGCGAAGGTCATCCATCAGGGTTACTACTGGCCCACGGTTGATCAAGACGCAAAAGAATTCATGAAAACGTGCGATAACTGTCAACGCTTTGCGAATATCATCCATTAGCCTCCTGAGCTGCTGACCCCAATCTCAGCACCATGACCCTTTGCACAATGGGGGATGGATCTAATCGGACCTTTCCTAATGGGTAAAGGACAGACCAAGTACGTCGTGGTAGCTGTGGATTACTTTACCAAATGGGCCGAGGCCGAGGCGCTCTCTACAATCACAGAAGCCACAGTCACGACCTTCATTTGGACGAGCATAGTCTGTCGCTTTGTCATACCTAATGCCATCGTGACAGACAATGGCAAGCAGTTCGACAACTCAAATTTCAAGGACTTCTGCCACAAGCTCAAAATCAGTCACCCCAAAGCCAACGAACAAGTAGAAGTCGTAAATAAGATCATTAAGCGCGGTCTTAAGCTATGGATGGACGCAAGGAAAGGTAGGTGGGCCGAAGAGCTGCCAGAGGTGCTCTGGTCATACCGAACCACACCCCGGGAGTCCACTGGCGAAACTCTATTTGCTATGGCCTTCGGCTCCAAGGCTGTGGTGCCTGTAGAAATTGGGTTACCGACCGAGAGGATAGACCACTACGAGCAGACAAGGAACGAGGAGGAGCTACTCAACCTCGACTTCCTTGATGAGAAAAAAGAAGTGGCCCAGCTACGCCTGGTAGAGTACCAAAATCGAATGGCGAGGCACTGCAACTCGAGAGTCCGACCTTGGAGTTTTCAGATCGAAAACCTGGTCCTCCGAAAGGTGCAGAAGCATGTTGATACACTGGAACCAAGTTGGGAAGGGTCATTTGAAGTCAAAGGCATAGTATGA

mRNA sequence

ATGGATGGATCCGATCAGGGACTTCTTAAAAGGCGATGTCCCAGTAGACCCAAAGGAAGCAAAGAGAATGACGTGGAGAGTAGCCCGACAAGGAACGAGGAGGAGCTACTCAACCTCGACTTCCTTGATGAGAAAAAAGAAGTGGCCCAGCTACGCCTGGTAGAGTACCAAAATCGAATGGCGAGGCACTGCAACTCGAGAGTCCGACCTTGGAGTTTTCAGATCGAAAACCTGGTCCTCCGAAAGGTGCAGAAGCATGTTGATACACTGGAACCAAGTTGGGAAGGGTCATTTGAAGTCAAAGGCATAGTATGA

Coding sequence (CDS)

ATGGATGGATCCGATCAGGGACTTCTTAAAAGGCGATGTCCCAGTAGACCCAAAGGAAGCAAAGAGAATGACGTGGAGAGTAGCCCGACAAGGAACGAGGAGGAGCTACTCAACCTCGACTTCCTTGATGAGAAAAAAGAAGTGGCCCAGCTACGCCTGGTAGAGTACCAAAATCGAATGGCGAGGCACTGCAACTCGAGAGTCCGACCTTGGAGTTTTCAGATCGAAAACCTGGTCCTCCGAAAGGTGCAGAAGCATGTTGATACACTGGAACCAAGTTGGGAAGGGTCATTTGAAGTCAAAGGCATAGTATGA

Protein sequence

MDGSDQGLLKRRCPSRPKGSKENDVESSPTRNEEELLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHVDTLEPSWEGSFEVKGIV

Homology

[Close]

BLAST of Moc07g00070 vs. NCBI nr
Match: XP_022142775.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 8.3e-24
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 31  RNEEE-LLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHVDT 90
           RNEEE LLNLD LDEK+EVAQLRL EYQNR+ RH NS VRP SFQ+ +LVLRKVQKHV+T
Sbjct: 341 RNEEELLLNLDLLDEKREVAQLRLTEYQNRITRHYNSVVRPRSFQVGHLVLRKVQKHVNT 400

Query: 91  LEPSWEGSFEVKGIV 105
           LEPSWEGSFEVKGIV
Sbjct: 401 LEPSWEGSFEVKGIV 415

[Close]

BLAST of Moc07g00070 vs. NCBI nr
Match: XP_022156070.1 (uncharacterized protein K02A2.6-like [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-21
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 31  RNEEE-LLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHVDT 90
           RNEEE LL LD +DEK+E AQLRL EYQN+MARH NSRVR  SFQI  LVLRKVQKHV+ 
Sbjct: 258 RNEEELLLYLDLIDEKREAAQLRLAEYQNQMARHYNSRVRSRSFQIGYLVLRKVQKHVEV 317

Query: 91  LEPSWEGSFEVKGIV 105
           LEPSWEG FEVKGIV
Sbjct: 318 LEPSWEGPFEVKGIV 332

[Close]

BLAST of Moc07g00070 vs. NCBI nr
Match: XP_022159003.1 (uncharacterized protein LOC111025448 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 4.0e-18
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 29  PTRNEEE-LLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHV 88
           P RNE E LLNLD L+ K+E AQLRLVE QNRMARH N+R++P SFQ+ +LV  K+Q HV
Sbjct: 524 PLRNEAELLLNLDLLEGKRETAQLRLVECQNRMARHYNTRIQPRSFQVGHLVSSKIQSHV 583

Query: 89  DTLEPSWEGSFEVKGIV 105
            TL+PSWE  FEVKGIV
Sbjct: 584 GTLDPSWEELFEVKGIV 600

[Close]

BLAST of Moc07g00070 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-12
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 32  NEEELLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHVDTLE 91
           +E  L+NLD L+EK+  +QLRL EYQNRMAR+ N+RV+  +F+  +LVL+KV +HV  LE
Sbjct: 744 SEALLVNLDLLEEKRSHSQLRLAEYQNRMARYYNARVKVRTFKPSDLVLKKVMQHVGALE 803

Query: 92  PSWEGSFEVKGIV 105
           P+WEG + V  I+
Sbjct: 804 PNWEGPYRVLKIL 816

[Close]

BLAST of Moc07g00070 vs. NCBI nr
Match: XP_022156049.1 (uncharacterized protein LOC111023017 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-12
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 30  TRNEEELLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHVDT 89
           T +E  LLNLD L+EK+  +QL+L EYQNRMAR+ N+R R  +F+  +L L+KV +HV+ 
Sbjct: 88  TNSEAFLLNLDLLEEKRSYSQLKLAEYQNRMARYYNTRERVRTFKPGDLNLKKVMQHVEA 147

Query: 90  LEPSWEGSFEVKGIV 105
           LEP+WEG + V  +V
Sbjct: 148 LEPNWEGPYRVLKVV 162

[Close]

BLAST of Moc07g00070 vs. ExPASy TrEMBL
Match: A0A6J1CLW5 (protein NYNRIN-like OS=Momordica charantia OX=3673 GN=LOC111012813 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.0e-24
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 31  RNEEE-LLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHVDT 90
           RNEEE LLNLD LDEK+EVAQLRL EYQNR+ RH NS VRP SFQ+ +LVLRKVQKHV+T
Sbjct: 341 RNEEELLLNLDLLDEKREVAQLRLTEYQNRITRHYNSVVRPRSFQVGHLVLRKVQKHVNT 400

Query: 91  LEPSWEGSFEVKGIV 105
           LEPSWEGSFEVKGIV
Sbjct: 401 LEPSWEGSFEVKGIV 415

[Close]

BLAST of Moc07g00070 vs. ExPASy TrEMBL
Match: A0A6J1DP99 (uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023037 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 31  RNEEE-LLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHVDT 90
           RNEEE LL LD +DEK+E AQLRL EYQN+MARH NSRVR  SFQI  LVLRKVQKHV+ 
Sbjct: 258 RNEEELLLYLDLIDEKREAAQLRLAEYQNQMARHYNSRVRSRSFQIGYLVLRKVQKHVEV 317

Query: 91  LEPSWEGSFEVKGIV 105
           LEPSWEG FEVKGIV
Sbjct: 318 LEPSWEGPFEVKGIV 332

[Close]

BLAST of Moc07g00070 vs. ExPASy TrEMBL
Match: A0A6J1DXL9 (uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025448 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 29  PTRNEEE-LLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHV 88
           P RNE E LLNLD L+ K+E AQLRLVE QNRMARH N+R++P SFQ+ +LV  K+Q HV
Sbjct: 524 PLRNEAELLLNLDLLEGKRETAQLRLVECQNRMARHYNTRIQPRSFQVGHLVSSKIQSHV 583

Query: 89  DTLEPSWEGSFEVKGIV 105
            TL+PSWE  FEVKGIV
Sbjct: 584 GTLDPSWEELFEVKGIV 600

[Close]

BLAST of Moc07g00070 vs. ExPASy TrEMBL
Match: A0A6J1DS38 (uncharacterized protein LOC111023017 OS=Momordica charantia OX=3673 GN=LOC111023017 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 30  TRNEEELLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHVDT 89
           T +E  LLNLD L+EK+  +QL+L EYQNRMAR+ N+R R  +F+  +L L+KV +HV+ 
Sbjct: 88  TNSEAFLLNLDLLEEKRSYSQLKLAEYQNRMARYYNTRERVRTFKPGDLNLKKVMQHVEA 147

Query: 90  LEPSWEGSFEVKGIV 105
           LEP+WEG + V  +V
Sbjct: 148 LEPNWEGPYRVLKVV 162

[Close]

BLAST of Moc07g00070 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 32  NEEELLNLDFLDEKKEVAQLRLVEYQNRMARHCNSRVRPWSFQIENLVLRKVQKHVDTLE 91
           +E  L+NLD L+EK+  +QLRL EYQNRMAR+ N+RV+  +F+  +LVL+KV +HV  LE
Sbjct: 744 SEALLVNLDLLEEKRSHSQLRLAEYQNRMARYYNARVKVRTFKPSDLVLKKVMQHVGALE 803

Query: 92  PSWEGSFEVKGIV 105
           P+WEG + V  I+
Sbjct: 804 PNWEGPYRVLKIL 816

The following BLAST results are available for this feature:

BLAST of Moc07g00070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142775.1	8.3e-24	82.67	protein NYNRIN-like [Momordica charantia]	[more]
XP_022156070.1	2.3e-21	78.67	uncharacterized protein K02A2.6-like [Momordica charantia]	[more]
XP_022159003.1	4.0e-18	67.53	uncharacterized protein LOC111025448 [Momordica charantia]	[more]
XP_022156986.1	5.6e-12	53.42	uncharacterized protein LOC111023816 [Momordica charantia]	[more]
XP_022156049.1	5.6e-12	52.00	uncharacterized protein LOC111023017 [Momordica charantia]	[more]

BLAST of Moc07g00070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc07g00070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLW5	4.0e-24	82.67	protein NYNRIN-like OS=Momordica charantia OX=3673 GN=LOC111012813 PE=4 SV=1	[more]
A0A6J1DP99	1.1e-21	78.67	uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DXL9	1.9e-18	67.53	uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DS38	2.7e-12	52.00	uncharacterized protein LOC111023017 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DWM2	2.7e-12	53.42	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1	[more]

BLAST of Moc07g00070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g00070.1	Moc07g00070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding