Moc07g00020 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g00020
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr7: 10745 .. 13144 (-)
RNA-Seq ExpressionMoc07g00020
SyntenyMoc07g00020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCAAGCTCAAAAGGTACGAGTCCATCTCGAAGGAAGCATCGAACTGCCCCTAACTCTGGGGGAAGGAAAAGAAGCAGTCACTCGAATCGAGAGTTCGTGGTGATCGATGACCCTCTAGCCTACAACTCCATCGTCAAGAGACTGACGATACACCATTTCAGAGCTATTCCGTCCACTTATCACCAAACTATGAAGTTTCCCACCCCCAACGAGATGAGGACTCTGGACGGACGACAGCGAGCTTCACGGGAGTGTTATGCCTTTACTATGAAGAAACCGAAAATGGTAAGTGCCATCCACACTCCTGTAGCTGAACCCGAATCCACCCCTTCAACGGTCAAGACAACTCCTAGGGAAGCCCCGAATGTGGATATCCCCAGCTCGATTATCAAAGAACAAGAAAAATGCATCCTGTTGGTTGAAGAGTTGGAGAAAGTTCTTATACTGGGCCAGGAAAAACCAATGTGGGAGTTGCACTGTCAGGTGGCGAGAAAGAGCGTCTAATGGACTTTCTCAAGAAAAACACTGACATATTCGCATAATACCACGAAGACATGCCTGACATAAACCCATCAGTCGTCGTGCATAGGCTCGACGTGGACTCAAGCACAAAGTCGGTGAGACTAAAGAAGCGAACCATAGATGTTGCTCGCTATGTCGCCACGACAGAAGAAGTGACCAAACTACTAAAAGCCAACTTTATCCGGGAGGTCCCCTATCCAAATTGGTTGTCTAATGTAGTCTTGGTCAAGAAGGCTAATGGAAAGTGGTGAATGTGTGTAGACTTCAGCAACTTGAACAAGGCTTGCCCAAATGAGAGCTTTCCCTTGCCACAAATTGACCAGCGGGTAGACGCCATAACCAGATCAAGATGCACCCGGCGGATCAGGAGCACACCTTCTTCATTACAGAACAAGGGTTGTTCTGCTACAAGGTCATGCCTTACGAGTTGAAGAACACTGAAGTGACCTACCAAAGGATGGTGACCAAGTTGTTCGCCCGCAGATCGAAAAGAACATGGAGGTGTACGTCGATGACATGTTGGCCAAGAGCCAAACAGCCGAACAACATATGAATGACCTTTCCGAAGCTTTCCAAGTCATATGCCATCATGGCATGAGGCTAAACCCCTGCTAAATGCACCTTCAGCGTGAGGTCGGGAAAGTTTCTTGGATTCATAGTGCACCAAAGGGGGATTGAAGCCAATCTAGAAAAGATTCAAGCCATCCTGAATATGTCTACCCCAACCAACCTGAAACAGCTCCAGAGCCTGAACGGGAAGATCACGGCACTAAACCGGTTCGTCTTTCGATCGACCGACAAGTGCCTGCCTTTCTTCAAATTGTTGAGGAAAAGAGGGAAGTTCGAGTGGACCAATGAATGTGAAAAGGCCTTCCAGGACCTGAAGCGATATATGGTGTCCACCCCTCCTAGCCAAGCCAAGCGTAGGAAATGAACTATATCTCTACCTAACCGTTTTAGAGAGCGCAGTTAGCTTAGCACTAGTCAAAGAGGAGGCTAGAAGGCAGCACCTTGTGTATTACACCAGCAAAGCCTTGATCGGAGTAGAAACACGCTACTCCTAGATCGAGAAACTGGCCCTTGCACTAGTCACCCTGGCAAGGAAATTGCGACCCTACTTTCAGGCTCACTTACTCGTGGTCCTAACCGACTAGCCGTTCCGGCAGATATTTTAGAAACTCGAGGTCCCAGGGAGAATCATGAAATGAGCTGTCGAGTTGAGCGAGTACGACATACATTATGCACCACGAGTATCGGTGAAGGGTCAAGCAACGGGGGATTTTGTCATCGAACTAACCCCAGCGCAACTGAAGGAAGGTGACGATCGTGGCTGATGGACTCGTACACGGATGGTTCGATAAACGACCAAGGTTGTGGGGCCGGAGTTTTACTAGTGAGCCTGGAAGGGAGCCGTCACAAGTACGCGCTCAGCTTAAAGTTTCGAACCTCCAATAATGAGGCCGAATATGGGTGCTGCTTGCCATGCTAAGGTTAGCCCGGTCAATGGGAGCTCAACACCTTAGCATCATTAGCGACTCTCAGCTAGTCGTCAGCTAGATCAACCAAGAGTACCAAGCCAAGGATGACCAAATGGCCCTATACCTCCAAAAGGTACGGGATGCTGAACACCTTCGAGTCGAGCACTGTCAAAATGCTGGGAGAGTCGAGCCTCACCGAGCCAGAAACGATGGACATCGACCAGCCAGATACCCAGAACTTGAGAGACCCCAGTCCGTAAATATTTGGAAATTGGCAAGCTGTCGAAAGATCAAGCAGCTGCCTGAAGGCTCTGAAGGCAGAGCACTCACTAGATATTTAGGATTGGGTAATTATACAAAAGAGGGTACTCGCTTCCGCTACTCAGATGTGTAG

mRNA sequence

ATGTCACCAAGCTCAAAAGGTACGAGTCCATCTCGAAGGAAGCATCGAACTGCCCCTAACTCTGGGGGAAGGAAAAGAAGCAGTCACTCGAATCGAGAGTTCGTGGTGATCGATGACCCTCTAGCCTACAACTCCATCGTCAAGAGACTGACGATACACCATTTCAGAGCTATTCCGTCCACTTATCACCAAACTATGAAGTTTCCCACCCCCAACGAGATGAGGACTCTGGACGGACGACAGCGAGCTTCACGGGAGTGTTATGCCTTTACTATGAAGAAACCGAAAATGGTAAGTGCCATCCACACTCCTGTAGCTGAACCCGAATCCACCCCTTCAACGGTCAAGACAACTCCTAGGGAAGCCCCGAATGTGGATATCCCCAGCTCGATTATCAAAGAACAAGAAAAATGCATCCTGTTGGTTGAAGAGTTGGAGAAAGTTCTTATACTGGGCCAGGAAAAACCAATGTGGGAGTTGCACTGTCAGGTACGGGATGCTGAACACCTTCGAGTCGAGCACTGTCAAAATGCTGGGAGAGTCGAGCCTCACCGAGCCAGAAACGATGGACATCGACCAGCCAGATACCCAGAACTTGAGAGACCCCAGTCCGTAAATATTTGGAAATTGGCAAGCTGTCGAAAGATCAAGCAGCTGCCTGAAGGCTCTGAAGGCAGAGCACTCACTAGATATTTAGGATTGGGTAATTATACAAAAGAGGGTACTCGCTTCCGCTACTCAGATGTGTAG

Coding sequence (CDS)

ATGTCACCAAGCTCAAAAGGTACGAGTCCATCTCGAAGGAAGCATCGAACTGCCCCTAACTCTGGGGGAAGGAAAAGAAGCAGTCACTCGAATCGAGAGTTCGTGGTGATCGATGACCCTCTAGCCTACAACTCCATCGTCAAGAGACTGACGATACACCATTTCAGAGCTATTCCGTCCACTTATCACCAAACTATGAAGTTTCCCACCCCCAACGAGATGAGGACTCTGGACGGACGACAGCGAGCTTCACGGGAGTGTTATGCCTTTACTATGAAGAAACCGAAAATGGTAAGTGCCATCCACACTCCTGTAGCTGAACCCGAATCCACCCCTTCAACGGTCAAGACAACTCCTAGGGAAGCCCCGAATGTGGATATCCCCAGCTCGATTATCAAAGAACAAGAAAAATGCATCCTGTTGGTTGAAGAGTTGGAGAAAGTTCTTATACTGGGCCAGGAAAAACCAATGTGGGAGTTGCACTGTCAGGTACGGGATGCTGAACACCTTCGAGTCGAGCACTGTCAAAATGCTGGGAGAGTCGAGCCTCACCGAGCCAGAAACGATGGACATCGACCAGCCAGATACCCAGAACTTGAGAGACCCCAGTCCGTAAATATTTGGAAATTGGCAAGCTGTCGAAAGATCAAGCAGCTGCCTGAAGGCTCTGAAGGCAGAGCACTCACTAGATATTTAGGATTGGGTAATTATACAAAAGAGGGTACTCGCTTCCGCTACTCAGATGTGTAG

Protein sequence

MSPSSKGTSPSRRKHRTAPNSGGRKRSSHSNREFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTMKKPKMVSAIHTPVAEPESTPSTVKTTPREAPNVDIPSSIIKEQEKCILLVEELEKVLILGQEKPMWELHCQVRDAEHLRVEHCQNAGRVEPHRARNDGHRPARYPELERPQSVNIWKLASCRKIKQLPEGSEGRALTRYLGLGNYTKEGTRFRYSDV
Homology
[Close]
BLAST of Moc07g00020 vs. NCBI nr
Match: XP_022158513.1 (uncharacterized protein LOC111024986 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-20
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 33  EFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTM 92
           EF+VID  LAYN+I+ RL IH+ RA+P TYHQTMKFPT NEMRTLD +QRAS ECYA TM
Sbjct: 191 EFMVIDGLLAYNTILGRLAIHNIRAVPFTYHQTMKFPTLNEMRTLDEQQRASEECYATTM 250

Query: 93  KKPKMVSAIHTPVAEPESTPST 115
           K+PK+V AI+    EPE   ST
Sbjct: 251 KEPKIVGAINILEGEPEPDSST 272

[Close]
BLAST of Moc07g00020 vs. NCBI nr
Match: XP_022152367.1 (uncharacterized protein LOC111020111 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-11
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 33  EFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTM 92
           EFVVID  LAYN+I  R  IH FRA+PST HQ +K+ TPN + T+ G Q+ SRECYA T+
Sbjct: 301 EFVVIDGRLAYNAIFGRPIIHSFRAVPSTLHQVLKYSTPNGVGTVRGEQKTSRECYASTL 360

Query: 93  K 94
           K
Sbjct: 361 K 361

[Close]
BLAST of Moc07g00020 vs. NCBI nr
Match: XP_022155866.1 (uncharacterized protein LOC111022880 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-11
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 33  EFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTM 92
           EFVV+D    YN+I  R  IH FRAIPST HQ +K+PTPN + T+ G Q ASRECYA  +
Sbjct: 223 EFVVVDGRSVYNAIFGRPIIHSFRAIPSTLHQVLKYPTPNGVGTVRGEQAASRECYAAAL 282

Query: 93  KKPKMVSAIHT 104
           K P  V A+ T
Sbjct: 283 KGPS-VCALET 292

[Close]
BLAST of Moc07g00020 vs. NCBI nr
Match: XP_022157402.1 (uncharacterized protein LOC111024109 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-10
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 0 

Query: 33  EFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTM 92
           EFVVID   AYN+I+ R  IH  RA+PSTYHQ +K+PT   + T+ G Q+ SRECYA  M
Sbjct: 35  EFVVIDRSSAYNAIIGRPLIHDLRAVPSTYHQVLKYPTSAGIATVRGEQKTSRECYATAM 94

Query: 93  KKPKMVSAIHTPVAEP-ESTPSTVKTTPRE 122
           K     +A+ T  AEP    P   + TP E
Sbjct: 95  KGTTTCAAV-TDAAEPCADEPEPNRGTPAE 123

[Close]
BLAST of Moc07g00020 vs. NCBI nr
Match: XP_022155902.1 (uncharacterized protein LOC111022905 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-10
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 33  EFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTM 92
           EF+V+D   +YN+I+ RLT+H  +AIPSTYHQ+MKFPTP  +  + G QR SRECY  +M
Sbjct: 200 EFLVVDYKSSYNAILGRLTMHMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSM 259

Query: 93  K 94
           K
Sbjct: 260 K 260

[Close]
BLAST of Moc07g00020 vs. ExPASy TrEMBL
Match: A0A6J1DWB0 (uncharacterized protein LOC111024986 OS=Momordica charantia OX=3673 GN=LOC111024986 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-20
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 33  EFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTM 92
           EF+VID  LAYN+I+ RL IH+ RA+P TYHQTMKFPT NEMRTLD +QRAS ECYA TM
Sbjct: 191 EFMVIDGLLAYNTILGRLAIHNIRAVPFTYHQTMKFPTLNEMRTLDEQQRASEECYATTM 250

Query: 93  KKPKMVSAIHTPVAEPESTPST 115
           K+PK+V AI+    EPE   ST
Sbjct: 251 KEPKIVGAINILEGEPEPDSST 272

[Close]
BLAST of Moc07g00020 vs. ExPASy TrEMBL
Match: A0A6J1DG07 (uncharacterized protein LOC111020111 OS=Momordica charantia OX=3673 GN=LOC111020111 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 33  EFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTM 92
           EFVVID  LAYN+I  R  IH FRA+PST HQ +K+ TPN + T+ G Q+ SRECYA T+
Sbjct: 301 EFVVIDGRLAYNAIFGRPIIHSFRAVPSTLHQVLKYSTPNGVGTVRGEQKTSRECYASTL 360

Query: 93  K 94
           K
Sbjct: 361 K 361

[Close]
BLAST of Moc07g00020 vs. ExPASy TrEMBL
Match: A0A6J1DT04 (uncharacterized protein LOC111022880 OS=Momordica charantia OX=3673 GN=LOC111022880 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 33  EFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTM 92
           EFVV+D    YN+I  R  IH FRAIPST HQ +K+PTPN + T+ G Q ASRECYA  +
Sbjct: 223 EFVVVDGRSVYNAIFGRPIIHSFRAIPSTLHQVLKYPTPNGVGTVRGEQAASRECYAAAL 282

Query: 93  KKPKMVSAIHT 104
           K P  V A+ T
Sbjct: 283 KGPS-VCALET 292

[Close]
BLAST of Moc07g00020 vs. ExPASy TrEMBL
Match: A0A6J1DUD8 (uncharacterized protein LOC111024109 OS=Momordica charantia OX=3673 GN=LOC111024109 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 0 

Query: 33  EFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTM 92
           EFVVID   AYN+I+ R  IH  RA+PSTYHQ +K+PT   + T+ G Q+ SRECYA  M
Sbjct: 35  EFVVIDRSSAYNAIIGRPLIHDLRAVPSTYHQVLKYPTSAGIATVRGEQKTSRECYATAM 94

Query: 93  KKPKMVSAIHTPVAEP-ESTPSTVKTTPRE 122
           K     +A+ T  AEP    P   + TP E
Sbjct: 95  KGTTTCAAV-TDAAEPCADEPEPNRGTPAE 123

[Close]
BLAST of Moc07g00020 vs. ExPASy TrEMBL
Match: A0A6J1DQL9 (uncharacterized protein LOC111022905 OS=Momordica charantia OX=3673 GN=LOC111022905 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 33  EFVVIDDPLAYNSIVKRLTIHHFRAIPSTYHQTMKFPTPNEMRTLDGRQRASRECYAFTM 92
           EF+V+D   +YN+I+ RLT+H  +AIPSTYHQ+MKFPTP  +  + G QR SRECY  +M
Sbjct: 200 EFLVVDYKSSYNAILGRLTMHMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSM 259

Query: 93  K 94
           K
Sbjct: 260 K 260

The following BLAST results are available for this feature:
BLAST of Moc07g00020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158513.14.6e-2067.07uncharacterized protein LOC111024986 [Momordica charantia][more]
XP_022152367.16.6e-1160.66uncharacterized protein LOC111020111 [Momordica charantia][more]
XP_022155866.16.6e-1156.34uncharacterized protein LOC111022880 [Momordica charantia][more]
XP_022157402.11.1e-1048.89uncharacterized protein LOC111024109 [Momordica charantia][more]
XP_022155902.11.1e-1057.38uncharacterized protein LOC111022905 [Momordica charantia][more]
BLAST of Moc07g00020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc07g00020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DWB02.2e-2067.07uncharacterized protein LOC111024986 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DG073.2e-1160.66uncharacterized protein LOC111020111 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1DT043.2e-1156.34uncharacterized protein LOC111022880 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DUD85.5e-1148.89uncharacterized protein LOC111024109 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DQL95.5e-1157.38uncharacterized protein LOC111022905 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
BLAST of Moc07g00020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g00020.1Moc07g00020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process