Moc06g41810 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g41810
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Single-stranded DNA-binding protein
Location	chr6: 32822016 .. 32824502 (+)
RNA-Seq Expression	Moc06g41810
Synteny	Moc06g41810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCAGTCGCACTGAGATTCGCCAAGCATTTCAGAATTCCTTCTTCAACTTTTCCCGCGTCTTCATTTGGTACTCTCTCTCCCTCTCTGTGATTATATTTTGTTGTTTAAGGCGTATGTTCTTTCTGTTGTTTGAATTGCTTTTTTGGTTGAGAGATGAAGGAGTTTCCCATGCATTTCGATGGTCAAGTGTAGAAAATGTGGTTAGATATTTGAACGCAGCTTTTGTGCTTTCCACAATTTGATTTTCGAAGTGGACTTTTATCAAATACGTGGGGGGCGAACTTTATTTTATTATGAAATTTGAGAGGCTGGCTAGAACTTGACTGATTTGTGTATTGGGTTTATCGTAACTGTAACCTTTGTGCTGGAGGGATGACTTGGGTAATTATTGAACGTTTCGTTGTAGTGGCAAGTAGGCAAACAAGCTCAAAGTTGTGGTTCTCTACCGGTGTTTCTGAAAGTGACAATGATGTTGAGAAGAACAATAGAGAAGAAGAAGAATATGATGATATGTTCGATGACAAAGTAGAATTACAGCCCCAAGGTGTGGATCCCAGGCGAGGTTGGGGATTTCGAGGTGTACATAAGGTATTTGATCTTTGTTCTCAGATGCGTTCCATTTTTAGAAGCTGAGATTTGAATTCTGGTTGCTGGTAATTTGACCCAAGAAGTGGAATCTTATATCTGTAATCTATTCTTGTGACTGTTTTACTTGGGTCAAATTTACAACCTATCAAAAAAACAAAAGGATCCATATTTTGCGTTCTTAGAGATGTACCATGCCCCTCTTTCGTTAATCAGTTTTAGGGGGCATTGATAAGAAGGGAAACCGCTTGTAGAAAGAATAAAAGAAGAGGATGTAGGGGATAATTGAGAGATTCTTATGGGGAAGAATGAGAATTTTACGTGGCTAGAGGTTGTAAGTATGATGTAAGTGAGTAGGAGTTCATATAGGTGCATATATTTTAAGACTTCACGGTTAGACAGTTATGATAGTGATTTATAAGCATTGTAAATGAGAGAGAAGATAGGCAACAATTAGAGTGAGTTAGGGAGAGAACCAGACCTCTGAATGTTTGTGGAGTTCTGGTTGTCCTCTCTTTTGGCAATCAATAGAATGTCTCCATTGGAGGGTTATATCACAATCTTAGGTAAAAGTCCCACCTTAACTAAGCAAAAGCAGTTATCTTTGATTCAGGTGATAAGATTATGTGAAAACCAAGGATATTGTTTCTTCAAACCTGTTATTCTTCTGTTTAAAAGTATAATCAATGGTGACAGGCAATAATTTGTGGAAGGGTGGGGCAAGCCCCTGTACAGAAGATCTTGAGAAACGGGCGCACGATAACTATCTTTACAGTTGGAACAGGAGGAATGTTTGACCAACGAATTGTTGAAGCAAAGGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCACTTGGTGCTTATGCAGTTCAACAACTTGTTAAAGAGTATGACCTCAACTTCTCATAAAACGTAGTTTGTCTATACAATTTCACTGATTCTTGGTGGGCTGTCAGCGCATCGGTTTATGTTGAGGGCGACATTGAGACCAGAGTGTACAATGACAGCATCAACGGTGAAGTAAAAAATGTTCCAGAAATATGTGTTCGACGCGATGGTATTGCAACACATACTATCTTTGGATTTCCTTCTTTCAACATTTATCTGAAATTAGTTGAACACGTCAACTTAATATGAAGAGTCTTCATCCAACAACATTTATGGTCTTTTTATGCATATAAAGGAGAAGCCTATCATTATTTTTAGGAAATTTCTATTCTAGTTTCTAAGATTAGTATTTGGTATCAGTTTCGTCTATAATTTAAAAAGTTTCGATTTGGTCCTTATGATTTTTTTTTTTAATTCTTTTGAAACTTCTCTAGTATCACAAAAAGTTGACAATTTTTTTACGAACATGTTTTCTCTGGATGTGATTGAGATTGTATCAAGTAAGAAAATGGTAAGATTTGGTAAGTTTAGAGATGTTTTGTAAGACTTAGCCTAACCATAACCATTGGGACCAAGTTAAAAAGTTTAAAATTAGGGACTAAATTGAAATTAGTTTAAAAGGACTAAAATGATAATTTAACCAAATCTTAGTACAGTATGACAGAAAAGTATTTACAACCATGCACAGATGACAGTTATGCTACATGTTAGTTCAAGTTTGATCTGTAAAGGATTTTATTATCGACTCCTTTTAACTGCCATTCTTCGTATCTGCAGGGAAGATTCGCCTTTTAAAACCTGCAGAAAGTGCCAGCAATATTTCTTTGGACGATTTGAGTAAGTTTTCCTGAAAATTTTGGTAACATGATTACTCAACATGGTAATAATGCATTGCATGGCTACTTTTTCATTCTTTCTCGCAGTCTGATGTGTGTTTTTTTTTTTTTTTTTTTGAATGGGTTGTAACTGACAGAAGAAGGGTTGTTTTAG

mRNA sequence

ATGAATTCAGTCGCACTGAGATTCGCCAAGCATTTCAGAATTCCTTCTTCAACTTTTCCCGCGTCTTCATTTGTGGCAAGTAGGCAAACAAGCTCAAAGTTGTGGTTCTCTACCGGTGTTTCTGAAAGTGACAATGATGTTGAGAAGAACAATAGAGAAGAAGAAGAATATGATGATATGTTCGATGACAAAGTAGAATTACAGCCCCAAGGTGTGGATCCCAGGCGAGGTTGGGGATTTCGAGGTGTACATAAGGCAATAATTTGTGGAAGGGTGGGGCAAGCCCCTGTACAGAAGATCTTGAGAAACGGGCGCACGATAACTATCTTTACAGTTGGAACAGGAGGAATGTTTGACCAACGAATTGTTGAAGCAAAGGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCACTTGGTGCTTATGCAGTTCAACAACTTGTTAAAGACGCATCGGTTTATGTTGAGGGCGACATTGAGACCAGAGTGTACAATGACAGCATCAACGGTGAAGTAAAAAATGTTCCAGAAATATGTGTTCGACGCGATGGGAAGATTCGCCTTTTAAAACCTGCAGAAAGTGCCAGCAATATTTCTTTGGACGATTTGAAAGAAGGGTTGTTTTAG

Coding sequence (CDS)

ATGAATTCAGTCGCACTGAGATTCGCCAAGCATTTCAGAATTCCTTCTTCAACTTTTCCCGCGTCTTCATTTGTGGCAAGTAGGCAAACAAGCTCAAAGTTGTGGTTCTCTACCGGTGTTTCTGAAAGTGACAATGATGTTGAGAAGAACAATAGAGAAGAAGAAGAATATGATGATATGTTCGATGACAAAGTAGAATTACAGCCCCAAGGTGTGGATCCCAGGCGAGGTTGGGGATTTCGAGGTGTACATAAGGCAATAATTTGTGGAAGGGTGGGGCAAGCCCCTGTACAGAAGATCTTGAGAAACGGGCGCACGATAACTATCTTTACAGTTGGAACAGGAGGAATGTTTGACCAACGAATTGTTGAAGCAAAGGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCACTTGGTGCTTATGCAGTTCAACAACTTGTTAAAGACGCATCGGTTTATGTTGAGGGCGACATTGAGACCAGAGTGTACAATGACAGCATCAACGGTGAAGTAAAAAATGTTCCAGAAATATGTGTTCGACGCGATGGGAAGATTCGCCTTTTAAAACCTGCAGAAAGTGCCAGCAATATTTCTTTGGACGATTTGAAAGAAGGGTTGTTTTAG

Protein sequence

MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDMFDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLLKPAESASNISLDDLKEGLF

Homology

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BLAST of Moc06g41810 vs. NCBI nr
Match: XP_022135640.1 (single-stranded DNA-binding protein, mitochondrial [Momordica charantia])

HSP 1 Score: 428.3 bits (1100), Expect = 3.8e-116
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM
Sbjct: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
           FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ
Sbjct: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 214
           PEICVRRDGKIRLLKPAESASNISLDDLKEGLF
Sbjct: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 213

[Close]

BLAST of Moc06g41810 vs. NCBI nr
Match: XP_022968788.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_022968789.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 378.3 bits (970), Expect = 4.5e-101
Identity = 190/213 (89.20%), Postives = 197/213 (92.49%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MN+VA+RF KHFRI      +SSFVASRQTSSKLW STG S S  DVEKNN EEEEYDD 
Sbjct: 1   MNAVAMRFLKHFRI------SSSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDF 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
           F+DK+ELQPQGVDPRRGWGFRGVHKAIICGR+GQAPVQKILRNGRTITIFTVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVK+ASVYVEGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 214
           PEICVRRDGKIRLLK  ESASNISLDDLKEGLF
Sbjct: 181 PEICVRRDGKIRLLKAGESASNISLDDLKEGLF 207

[Close]

BLAST of Moc06g41810 vs. NCBI nr
Match: XP_038878660.1 (single-stranded DNA-binding protein, mitochondrial [Benincasa hispida])

HSP 1 Score: 378.3 bits (970), Expect = 4.5e-101
Identity = 186/213 (87.32%), Postives = 197/213 (92.49%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MN+VA+RF   FRI SS FP +SFVASRQTS KLW ST  SESD DVEKNN EE+EYD  
Sbjct: 1   MNAVAMRFLNRFRISSSNFPTTSFVASRQTSWKLWLSTDASESDVDVEKNNGEEDEYDQF 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
           F++KVELQPQGVDPRRGWG+RGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ
Sbjct: 61  FNEKVELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLP+PAQWHRIAVHNEPLGAYAVQQLVK+ASVYVEGDIETRVYNDSI GEVKN+
Sbjct: 121 RIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSIGGEVKNI 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 214
           PEICVRRDGK+RLLKP ESASNISLDDLKEGLF
Sbjct: 181 PEICVRRDGKLRLLKPGESASNISLDDLKEGLF 213

[Close]

BLAST of Moc06g41810 vs. NCBI nr
Match: KAG7024011.1 (Single-stranded DNA-binding protein, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.8 bits (961), Expect = 5.0e-100
Identity = 188/213 (88.26%), Postives = 196/213 (92.02%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MN+VA+RF KHFRI      +SSFVASRQTSSKLW ST  S S  DVEKNN EEEEYDD+
Sbjct: 1   MNAVAMRFLKHFRI------SSSFVASRQTSSKLWLSTSASGSGIDVEKNNGEEEEYDDL 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
           F+DK+ELQPQGVDPRRGWGFRGVHKAIICGR+GQAPVQKILRNGRTITIFTVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVK+ASVYVEGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 214
           PEICVRRDGKIRLLK  ESASNI LDDLKEGLF
Sbjct: 181 PEICVRRDGKIRLLKAGESASNICLDDLKEGLF 207

[Close]

BLAST of Moc06g41810 vs. NCBI nr
Match: KAG6590479.1 (Single-stranded DNA-binding protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 374.0 bits (959), Expect = 8.5e-100
Identity = 188/213 (88.26%), Postives = 195/213 (91.55%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MN+VA+RF KHFRI      +SSFVASRQTSSKLW ST  S S  DVEKNN EEEEYDD 
Sbjct: 1   MNAVAMRFLKHFRI------SSSFVASRQTSSKLWLSTSASGSGIDVEKNNGEEEEYDDF 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
           F+DK+ELQPQGVDPRRGWGFRGVHKAIICGR+GQAPVQKILRNGRTITIFTVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVK+ASVYVEGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 214
           PEICVRRDGKIRLLK  ESASNI LDDLKEGLF
Sbjct: 181 PEICVRRDGKIRLLKAGESASNICLDDLKEGLF 207

[Close]

BLAST of Moc06g41810 vs. ExPASy Swiss-Prot
Match: Q84J78 (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.5e-72
Identity = 137/212 (64.62%), Postives = 165/212 (77.83%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MNS+A+R +K  R  S     S    S +  SK WFSTG  +           EE++++ 
Sbjct: 1   MNSLAIRVSKVLRSSS----ISPLAISAERGSKSWFSTGPIDEG--------VEEDFEEN 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
             ++ ELQP GVDPR+GWGFRGVH+AIICG+VGQAP+QKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  VTERPELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           R+V A + PKPAQWHRIAVHNE LG+YAVQ+L K++SVYVEGDIETRVYNDSI+ EVK++
Sbjct: 121 RLVGATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSI 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGL 213
           PEICVRRDGKIR++K  ES S IS D+LKEGL
Sbjct: 181 PEICVRRDGKIRMIKYGESISKISFDELKEGL 200

[Close]

BLAST of Moc06g41810 vs. ExPASy Swiss-Prot
Match: P18022 (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 GN=ssb PE=3 SV=3)

HSP 1 Score: 66.6 bits (161), Expect = 3.8e-10
Identity = 41/143 (28.67%), Postives = 71/143 (49.65%), Query Frame = 0


Query: 81  RGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVH 140
           RG++K I+ GR+G  P  + + NG  +    V T   +  R  +  ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESW--RDKQTGEMREQTEWHRVVLF 63

Query: 141 NEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLL------ 200
            + L   A + L K A VY+EG + TR ++D  NG  + + EI V+  G +++L      
Sbjct: 64  GK-LAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQMLGSAPQQ 123

Query: 201 ------KPAESASNISLDDLKEG 212
                 KP ++    S D  K+G
Sbjct: 124 NAQAQPKPQQNGQPQSADATKKG 141

[Close]

BLAST of Moc06g41810 vs. ExPASy Swiss-Prot
Match: P28045 (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 GN=ssb PE=3 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 3.8e-10
Identity = 41/143 (28.67%), Postives = 71/143 (49.65%), Query Frame = 0


Query: 81  RGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVH 140
           RG++K I+ GR+G  P  + + NG  +    V T   +  R  +  ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESW--RDKQTGEMREQTEWHRVVLF 63

Query: 141 NEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLL------ 200
            + L   A + L K A VY+EG + TR ++D  NG  + + EI V+  G +++L      
Sbjct: 64  GK-LAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQMLGSAPQQ 123

Query: 201 ------KPAESASNISLDDLKEG 212
                 KP ++    S D  K+G
Sbjct: 124 NAQAQPKPQQNGQPQSADATKKG 141

[Close]

BLAST of Moc06g41810 vs. ExPASy Swiss-Prot
Match: Q9CYR0 (Single-stranded DNA-binding protein, mitochondrial OS=Mus musculus OX=10090 GN=Ssbp1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 31/97 (31.96%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 81  RGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMF---DQRIVEAKDLPKPAQWHRI 140
           R +++  + GRVGQ PV + +     +TIF++ T  M+   D  + +  D+ +   WHRI
Sbjct: 28  RSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSEVYQMGDVSQKTTWHRI 87

Query: 141 AVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSIN 175
           +V    L   A Q + K A ++VEG ++   Y D  N
Sbjct: 88  SVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNN 124

[Close]

BLAST of Moc06g41810 vs. ExPASy Swiss-Prot
Match: Q1RK72 (Single-stranded DNA-binding protein OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=ssb PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 32/125 (25.60%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 83  VHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVHNE 142
           ++K  + G +G+ P  +    G+ I   ++ T  ++  R+   K   +  +WHR+ + NE
Sbjct: 5   LNKVTLIGNLGRDPEIRTTGEGKEIANLSLATTDIWKDRVTGEK--KEKTEWHRVVIFNE 64

Query: 143 PLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLLKPAESASN 202
            L +     + K + +Y+EG ++TR +NDS +G  K   EI ++      +L  ++++++
Sbjct: 65  GLVSVVKNYVKKGSKLYIEGSLQTRKWNDS-SGVEKYTTEIVLQNFNSQLILLDSKNSTS 124

Query: 203 ISLDD 208
            SL D
Sbjct: 125 SSLQD 126

[Close]

BLAST of Moc06g41810 vs. ExPASy TrEMBL
Match: A0A6J1C1K4 (single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007549 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 1.8e-116
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM
Sbjct: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
           FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ
Sbjct: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 214
           PEICVRRDGKIRLLKPAESASNISLDDLKEGLF
Sbjct: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 213

[Close]

BLAST of Moc06g41810 vs. ExPASy TrEMBL
Match: A0A6J1HZ42 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467920 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.2e-101
Identity = 190/213 (89.20%), Postives = 197/213 (92.49%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MN+VA+RF KHFRI      +SSFVASRQTSSKLW STG S S  DVEKNN EEEEYDD 
Sbjct: 1   MNAVAMRFLKHFRI------SSSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDF 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
           F+DK+ELQPQGVDPRRGWGFRGVHKAIICGR+GQAPVQKILRNGRTITIFTVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVK+ASVYVEGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 214
           PEICVRRDGKIRLLK  ESASNISLDDLKEGLF
Sbjct: 181 PEICVRRDGKIRLLKAGESASNISLDDLKEGLF 207

[Close]

BLAST of Moc06g41810 vs. ExPASy TrEMBL
Match: A0A6J1HCE9 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462062 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.0e-100
Identity = 187/213 (87.79%), Postives = 195/213 (91.55%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MN+VA+RF KHFRI      +SSFVASRQTSSKLW ST  S S  DVEKNN +EEEYDD 
Sbjct: 1   MNAVAMRFVKHFRI------SSSFVASRQTSSKLWLSTSASGSGIDVEKNNGDEEEYDDF 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
           F+DK+ELQPQGVDPRRGWGFRGVHKAIICGR+GQAPVQKILRNGRTITIFTVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVK+ASVYVEGDIETRVYNDSINGEVKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 214
           PEICVRRDGKIRLLK  ESASNI LDDLKEGLF
Sbjct: 181 PEICVRRDGKIRLLKAGESASNICLDDLKEGLF 207

[Close]

BLAST of Moc06g41810 vs. ExPASy TrEMBL
Match: A0A0A0LVY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568540 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 9.8e-94
Identity = 174/213 (81.69%), Postives = 188/213 (88.26%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MNSVA+RF   FR PSS FP SSFVAS QTSSK W STG SE DNDVEKN+ EE++YD  
Sbjct: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
            +   ELQPQGVDP RGWG+RGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGM+DQ
Sbjct: 61  SN---ELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           RI + +DLPKPAQWHRIAVHNE LGAYAVQ+L ++ASVYVEGDIETRVYNDSINGEVKN+
Sbjct: 121 RIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNI 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 214
           PEICVRRDG +RLLKP ESASNISLDDLKEGLF
Sbjct: 181 PEICVRRDGTLRLLKPGESASNISLDDLKEGLF 210

[Close]

BLAST of Moc06g41810 vs. ExPASy TrEMBL
Match: A0A1S3BQI7 (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492127 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.6e-88
Identity = 167/213 (78.40%), Postives = 183/213 (85.92%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MNSV +R    FRIPSS  P SSFVAS QTSSK W STG SESD D+EKN+  +++YD  
Sbjct: 1   MNSVTVRLLNRFRIPSSNSPTSSFVASTQTSSKFWLSTGASESDVDIEKNDGGDDDYDAF 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
            +   ELQPQGVDP RGWG+RGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGM+DQ
Sbjct: 61  SN---ELQPQGVDPSRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           RIV+ + LPKPAQWHRIAVHNE LGAYAVQ+L K+ASVYVEGDIETRVYNDSINGEVKN+
Sbjct: 121 RIVDGRGLPKPAQWHRIAVHNELLGAYAVQKLCKNASVYVEGDIETRVYNDSINGEVKNI 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 214
           PEICVRRDG + LLKP ESASN+SLDDLKE LF
Sbjct: 181 PEICVRRDGMLHLLKPGESASNLSLDDLKERLF 210

[Close]

BLAST of Moc06g41810 vs. TAIR 10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein )

HSP 1 Score: 272.7 bits (696), Expect = 2.5e-73
Identity = 137/212 (64.62%), Postives = 165/212 (77.83%), Query Frame = 0


Query: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60
           MNS+A+R +K  R  S     S    S +  SK WFSTG  +           EE++++ 
Sbjct: 1   MNSLAIRVSKVLRSSS----ISPLAISAERGSKSWFSTGPIDEG--------VEEDFEEN 60

Query: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
             ++ ELQP GVDPR+GWGFRGVH+AIICG+VGQAP+QKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  VTERPELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180
           R+V A + PKPAQWHRIAVHNE LG+YAVQ+L K++SVYVEGDIETRVYNDSI+ EVK++
Sbjct: 121 RLVGATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSI 180

Query: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGL 213
           PEICVRRDGKIR++K  ES S IS D+LKEGL
Sbjct: 181 PEICVRRDGKIRMIKYGESISKISFDELKEGL 200

[Close]

BLAST of Moc06g41810 vs. TAIR 10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-21
Identity = 58/204 (28.43%), Postives = 105/204 (51.47%), Query Frame = 0


Query: 27  SRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDMFDDKVELQPQGVDPRRGWGFR----- 86
           SR+    L  +  +S++      NN    E  D  + +  ++P+  DP   +        
Sbjct: 9   SRRLYRSLLSNPRISQASMSFCTNNITSPEDSDFDELESPIEPKASDPVSRFSGEERVME 68

Query: 87  ----------GVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPK- 146
                     G+ KAI+ G+VGQ P+QK L++GRT+T+F+VGTGG+ + R     + P+ 
Sbjct: 69  ERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRRPLINEDPRE 128

Query: 147 -----PAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNVPEICV 206
                  QWHR++V+ E L    ++ +     +Y+EG++ET+++ D + G V+ + E+ +
Sbjct: 129 YASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIREVAI 188

Query: 207 RRDGKIRLLKPAESASNISLDDLK 210
           RR+G++  L  A      S  +L+
Sbjct: 189 RRNGRVVFLGKAGDMQQPSSAELR 212

The following BLAST results are available for this feature:

BLAST of Moc06g41810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135640.1	3.8e-116	100.00	single-stranded DNA-binding protein, mitochondrial [Momordica charantia]	[more]
XP_022968788.1	4.5e-101	89.20	single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_022968...	[more]
XP_038878660.1	4.5e-101	87.32	single-stranded DNA-binding protein, mitochondrial [Benincasa hispida]	[more]
KAG7024011.1	5.0e-100	88.26	Single-stranded DNA-binding protein, mitochondrial [Cucurbita argyrosperma subsp...	[more]
KAG6590479.1	8.5e-100	88.26	Single-stranded DNA-binding protein, mitochondrial, partial [Cucurbita argyrospe...	[more]

BLAST of Moc06g41810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J78	3.5e-72	64.62	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P18022	3.8e-10	28.67	Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 G...	[more]
P28045	3.8e-10	28.67	Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 G...	[more]
Q9CYR0	1.2e-08	31.96	Single-stranded DNA-binding protein, mitochondrial OS=Mus musculus OX=10090 GN=S...	[more]
Q1RK72	1.6e-08	25.60	Single-stranded DNA-binding protein OS=Rickettsia bellii (strain RML369-C) OX=33...	[more]

BLAST of Moc06g41810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1K4	1.8e-116	100.00	single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=367...	[more]
A0A6J1HZ42	2.2e-101	89.20	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1HCE9	7.0e-100	87.79	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita moschata OX=3662...	[more]
A0A0A0LVY2	9.8e-94	81.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568540 PE=4 SV=1	[more]
A0A1S3BQI7	1.6e-88	78.40	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Moc06g41810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11060.1	2.5e-73	64.62	mitochondrially targeted single-stranded DNA binding protein	[more]
AT3G18580.1	6.4e-21	28.43	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011344	Single-stranded DNA-binding protein	TIGRFAM	TIGR00621	TIGR00621	coord: 81..190 e-value: 3.7E-15 score: 54.6
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 1..212
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 83..186 e-value: 7.9E-22 score: 77.3
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 83..192 score: 12.33697
IPR000424	Primosome PriB/single-strand DNA-binding	CDD	cd04496	SSB_OBF	coord: 87..187 e-value: 2.30366E-16 score: 69.5633
None	No IPR available	GENE3D	2.40.50.140		coord: 82..195 e-value: 2.2E-19 score: 71.4
None	No IPR available	PANTHER	PTHR10302:SF13	SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL	coord: 1..212
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 82..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g41810.1	Moc06g41810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001732	formation of cytoplasmic translation initiation complex
biological_process	GO:0006264	mitochondrial DNA replication
biological_process	GO:0051096	positive regulation of helicase activity
biological_process	GO:0006260	DNA replication
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003743	translation initiation factor activity