Moc06g40080 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g40080
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr6: 31302691 .. 31303086 (-)
RNA-Seq Expression	Moc06g40080
Synteny	Moc06g40080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGGTACGCATTTTATATGTATATAACATTAGGTGTGCTTAGTTATTAATTATGATTAGTTGGGTCCGAGATAACCCTCATTGGTTCGTACTTTTCGTGCAGGGTAAATTCCCTGATCCGACCAAATATTTTGGACGTGGGGGTGGGCCCGATGATGATGATCCATCGGATCAAAGGCCTGATGAAGCCCCAACACCAGATGGAGGTCCGAAGAGTATGGACGAGTACCGGAGGCCGGAAGAGGTCCCTAAGACTGACGAGTATCGAACCGTGGAGCATGGTCCGAAGATTATGGACGATAATTCAAAGAATATGGACGTGGATCCGAAGAATATAGACGAGGATCCGATGATTACGGACGAGGATCCGATGTTTATGGTTGAAGACTAG

mRNA sequence

ATGTCGAAGGGTAAATTCCCTGATCCGACCAAATATTTTGGACGTGGGGGTGGGCCCGATGATGATGATCCATCGGATCAAAGGCCTGATGAAGCCCCAACACCAGATGGAGGTCCGAAGAGTATGGACGAGTACCGGAGGCCGGAAGAGGTCCCTAAGACTGACGAGTATCGAACCGTGGAGCATGGTCCGAAGATTATGGACGATAATTCAAAGAATATGGACGTGGATCCGAAGAATATAGACGAGGATCCGATGATTACGGACGAGGATCCGATGTTTATGGTTGAAGACTAG

Coding sequence (CDS)

ATGTCGAAGGGTAAATTCCCTGATCCGACCAAATATTTTGGACGTGGGGGTGGGCCCGATGATGATGATCCATCGGATCAAAGGCCTGATGAAGCCCCAACACCAGATGGAGGTCCGAAGAGTATGGACGAGTACCGGAGGCCGGAAGAGGTCCCTAAGACTGACGAGTATCGAACCGTGGAGCATGGTCCGAAGATTATGGACGATAATTCAAAGAATATGGACGTGGATCCGAAGAATATAGACGAGGATCCGATGATTACGGACGAGGATCCGATGTTTATGGTTGAAGACTAG

Protein sequence

MSKGKFPDPTKYFGRGGGPDDDDPSDQRPDEAPTPDGGPKSMDEYRRPEEVPKTDEYRTVEHGPKIMDDNSKNMDVDPKNIDEDPMITDEDPMFMVED

Homology

[Close]

BLAST of Moc06g40080 vs. NCBI nr
Match: XP_022153201.1 (uncharacterized protein LOC111020757 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-12
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 1   MSKGKFPDPTKYFGRGGGPDDDDPSDQRPDEAPTPDGGPKSMDEYRRPEEVPKTDEYRTV 60
           ++KGKFPD +KYFG GGGPDDD PSDQRPDE+P PDGG KSMDE +R +E  +TDE    
Sbjct: 412 LAKGKFPDSSKYFGGGGGPDDDGPSDQRPDESPKPDGGRKSMDEDQRSDEDQRTDEDLET 471

Query: 61  EHGP 65
           E  P
Sbjct: 472 EKEP 475

[Close]

BLAST of Moc06g40080 vs. ExPASy TrEMBL
Match: A0A6J1DJX9 (uncharacterized protein LOC111020757 OS=Momordica charantia OX=3673 GN=LOC111020757 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 1   MSKGKFPDPTKYFGRGGGPDDDDPSDQRPDEAPTPDGGPKSMDEYRRPEEVPKTDEYRTV 60
           ++KGKFPD +KYFG GGGPDDD PSDQRPDE+P PDGG KSMDE +R +E  +TDE    
Sbjct: 412 LAKGKFPDSSKYFGGGGGPDDDGPSDQRPDESPKPDGGRKSMDEDQRSDEDQRTDEDLET 471

Query: 61  EHGP 65
           E  P
Sbjct: 472 EKEP 475

The following BLAST results are available for this feature:

BLAST of Moc06g40080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153201.1	3.1e-12	65.63	uncharacterized protein LOC111020757 [Momordica charantia]	[more]

BLAST of Moc06g40080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g40080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJX9	1.5e-12	65.63	uncharacterized protein LOC111020757 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Moc06g40080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g40080.1	Moc06g40080.1	mRNA