Moc06g38390 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g38390
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RRM domain-containing protein
Location	chr6: 29730081 .. 29732573 (+)
RNA-Seq Expression	Moc06g38390
Synteny	Moc06g38390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAAAATATTTATTCTGGTGCGAGACAATGTATCCTGAAAAGTATGGTGGAAAATTTATATATGGTTCATCGGGGGTAACTGTCAGGTACTTGAATGAAAGGGTAACTGCAAATTACTTTCTCATTCTATTTGAAACTCAGAGTTGAAATTGGGGCTCTACTCCCTTTTGTTCTTTAAAATACATGGGGATAGAACCATCATGGGTGGCTCATTGGTCCAAAGGGGCCAGAGTTAATTAAGAGGGAATGGGTTCAAACCCCATGATGGCCACCTACTTCAGGAATTAGTAATTCCTATGTGTTTTCCGACGCCAAATGTTGTAGGGTCAGACAGTTGCCCAGTGAGATTAGTCGAGGTGCGCGCAAGCTGGCCCGGTCACTCACGGATATGAAAATATATATGTGGATAGTGGCTTTAACCACCCCTCTTTCTTCCCCTTATTTATTATTATCATTATTATTTTTTCACTACCGTCCCAGGAAAACTTTGATGTTCGATGGCTGGTTGGGTCATGTAGTTATGCTAAAGTCGAAAACCACTCTCAAGGAGAAGTTAAGTGCTGGAATAGATAGATGTTCGCCTATGTGTTTACTCAAATGAAAGAGCTTAAGGACAAAATAGTGTTTCTGGATTTTCTGATTTGAACTCATGACCTCATGTTGACACCTGTCTCTGACCAAGAGGTCATGAGTTCGAATCAGGTTGTTTAGATCTAAAGGGGGAACAATGCCGAGAGGACACTCTACAATTGAATTACAATCAGCACAATCAGTCGAGCTCGGTTATGTGGGATTGTGACCCAAGTGGGGGCATGATTATGAGAGGGATTTACTGTGGGTTGATTGTGGACTGTTGGGCCGCTCTAAAGATTAATTGTAAGAGGCAGGTTGGATGTGAAGAACATTAACCACAGATTCAACCTTAAAAATTGTCTTCTTGATATGACACAGTAAGAAGGAAACTTTTTGAAGATAGAGATGCAAACAAAAATGGCTGAGGTAGGGAGATGTTTCCTACAAGTTGTGGTTGATCGGAGAAAGGTAAATCTAATCTCTGAGGTGTTCACTTTTGATGGGAGGAATTTAATTGTCTACTAGGGGATTTAGCTTGAATTTTGAACTTTTTCCAACAACCGTACGGTAAATACAGTGGGAAAGATTCTTACCTGAGTGCTAAAAAATTAAGTGTCAGACAGACTTGGGCAGAACATAATAGACGAAGAGATTTTTAGAGTGGTGAAGTCTTGGGCACTGGTTTTACTTCTGAATCTTGTAAAATGTCTTGGAACATCATCAAAAATACTTTGGTGTTTTTTTTCCAAGACTGTCCAGACTGGAATCATTCATGTTATAATTAATTAAATGTTTACCTGCTTGATTGAAAAAAAGCATTGTTGTTAGGTCAATCTTTGCCACCAAATCTTGTAAGCTGCTCCATCGCCATCCAACCCAACAGACTCACATTATTGTACAATACTTCAACCATGTACATTATGATACGATAACATATTGGATAAGAACCTTTTAGTTTTATGTTTATTTCTTGAGCCTTCATGTGCTTAGTCCAGTCATATTTTGTTTCCAGTTGTGAAATCTCCATTAATATTAAATATAGGGTTAAACTATAAGTTCTCAATCTAATAGGTCAACGCAGGTTCTGAATTTTTATGAGTATATTTTTCTTTTGTCAAAAGCCTTTAAAATTGACAACGTTTTTGCTTATGTGGTGGCATTTAATGGGGTTCTGTACATTTATTCTAGATGTGATGATATGACTATTTTCATTTTTTATGGAATGACTTCTCAGGATTCAAGTGGTTTTGTTGATGAGAAGTGCGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACAGAGTAAGGAAAATTATTGTCCCACCCTCTGCAATGTATTTGTCTTCTAGTTTTCCTTTTCTATATTGAAGTTTGTATCTACTTGTTTCAGAGCGACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCCTGTGGCACACTCGCGGTCCGAAGCGTGGAGAGCCACGGGGATTCGCTTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCTTGGTTAGCCACTTCATTGCCTTTGTCAAGCAATTCCTTATTTTTGCCTGTAAAAGTGAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGCCCGTTGGTTGTACGCCTTGCAAGTGAGAAGTGCATGATCGACACAACAAAAAGTATTTCCCGAGCAGCAGGCGAGTCGAGCAAATCGAGACTTGGTGGCAGCAATTATGGACAGATGACTCGCACTGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTCTGGAAGGAGAGGCGGAGAGCTCGAGCTCTCGTGTGAAAAAACAGAAGCAAGATAACATCAGTTGCAGAGATAATATTGATAAGCCTCTCAAAACATCCTGA

mRNA sequence

ATGGAGGCAAAATATTTATTCTGGTGCGAGACAATGTATCCTGAAAAGTATGGTGGAAAATTTATATATGGTTCATCGGGGGTAACTGTCAGGGTCAGACAGTTGCCCAGTGAGATTAGTCGAGGTGCGCGCAAGCTGGCCCGGTCACTCACGGATATGAAAATATATATGTGGATAGTGGCTTTAACCACCCCTCTTTCTTCCCCTTATTTATTATTATCATTATTATTTTTTCACTACCGTCCCAGGAAAACTTTGATGTTCGATGGCTGGTTGGGTCATGTAGTTATGCTAAAGTCGAAAACCACTCTCAAGGAGAAGTTAAGTGCTGGAATAGATAGATGTTCGCCTATAGGTCATGAGTTCGAATCAGGTTGTTTAGATCTAAAGGGGGAACAATGCCGAGAGGACACTCTACAATTGAATTACAATCAGCACAATCAGTCGAGCTCGGTTATGTGGGATTGTGACCCAAGTGGGGGCATGATTATGAGAGGGATTTACTGTGGGTTGATTGTGGACTGTTGGGCCGCTCTAAAGATTAATTGTAAGAGGCAGGATTCAAGTGGTTTTGTTGATGAGAAGTGCGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACAGAAGCGACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCCTGTGGCACACTCGCGGTCCGAAGCGTGGAGAGCCACGGGGATTCGCTTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGCCCGTTGGTTGTACGCCTTGCAAGTGAGAAGTGCATGATCGACACAACAAAAAGTATTTCCCGAGCAGCAGGCGAGTCGAGCAAATCGAGACTTGGTGGCAGCAATTATGGACAGATGACTCGCACTGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTCTGGAAGGAGAGGCGGAGAGCTCGAGCTCTCGTGTGAAAAAACAGAAGCAAGATAACATCAGTTGCAGAGATAATATTGATAAGCCTCTCAAAACATCCTGA

Coding sequence (CDS)

ATGGAGGCAAAATATTTATTCTGGTGCGAGACAATGTATCCTGAAAAGTATGGTGGAAAATTTATATATGGTTCATCGGGGGTAACTGTCAGGGTCAGACAGTTGCCCAGTGAGATTAGTCGAGGTGCGCGCAAGCTGGCCCGGTCACTCACGGATATGAAAATATATATGTGGATAGTGGCTTTAACCACCCCTCTTTCTTCCCCTTATTTATTATTATCATTATTATTTTTTCACTACCGTCCCAGGAAAACTTTGATGTTCGATGGCTGGTTGGGTCATGTAGTTATGCTAAAGTCGAAAACCACTCTCAAGGAGAAGTTAAGTGCTGGAATAGATAGATGTTCGCCTATAGGTCATGAGTTCGAATCAGGTTGTTTAGATCTAAAGGGGGAACAATGCCGAGAGGACACTCTACAATTGAATTACAATCAGCACAATCAGTCGAGCTCGGTTATGTGGGATTGTGACCCAAGTGGGGGCATGATTATGAGAGGGATTTACTGTGGGTTGATTGTGGACTGTTGGGCCGCTCTAAAGATTAATTGTAAGAGGCAGGATTCAAGTGGTTTTGTTGATGAGAAGTGCGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACAGAAGCGACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCCTGTGGCACACTCGCGGTCCGAAGCGTGGAGAGCCACGGGGATTCGCTTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGCCCGTTGGTTGTACGCCTTGCAAGTGAGAAGTGCATGATCGACACAACAAAAAGTATTTCCCGAGCAGCAGGCGAGTCGAGCAAATCGAGACTTGGTGGCAGCAATTATGGACAGATGACTCGCACTGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTCTGGAAGGAGAGGCGGAGAGCTCGAGCTCTCGTGTGAAAAAACAGAAGCAAGATAACATCAGTTGCAGAGATAATATTGATAAGCCTCTCAAAACATCCTGA

Protein sequence

MEAKYLFWCETMYPEKYGGKFIYGSSGVTVRVRQLPSEISRGARKLARSLTDMKIYMWIVALTTPLSSPYLLLSLLFFHYRPRKTLMFDGWLGHVVMLKSKTTLKEKLSAGIDRCSPIGHEFESGCLDLKGEQCREDTLQLNYNQHNQSSSVMWDCDPSGGMIMRGIYCGLIVDCWAALKINCKRQDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS

Homology

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BLAST of Moc06g38390 vs. NCBI nr
Match: XP_022157809.1 (probable RNA-binding protein 18 isoform X2 [Momordica charantia])

HSP 1 Score: 339.0 bits (868), Expect = 5.1e-89
Identity = 172/174 (98.85%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 184 KRQDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 243
           +R+DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 19  RRKDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 78

Query: 244 FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 303
           FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG
Sbjct: 79  FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 138

Query: 304 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 358
           SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS
Sbjct: 139 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 192

[Close]

BLAST of Moc06g38390 vs. NCBI nr
Match: XP_022157813.1 (probable RNA-binding protein 18 isoform X3 [Momordica charantia])

HSP 1 Score: 335.5 bits (859), Expect = 5.6e-88
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 187 DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 246
           DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 4   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63

Query: 247 IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 306
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY
Sbjct: 64  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 123

Query: 307 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 358
           GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS
Sbjct: 124 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 174

[Close]

BLAST of Moc06g38390 vs. NCBI nr
Match: XP_022157798.1 (probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1 probable RNA-binding protein 18 isoform X1 [Momordica charantia])

HSP 1 Score: 335.5 bits (859), Expect = 5.6e-88
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 187 DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 246
           DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 53  DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 112

Query: 247 IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 306
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY
Sbjct: 113 IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 172

Query: 307 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 358
           GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS
Sbjct: 173 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 223

[Close]

BLAST of Moc06g38390 vs. NCBI nr
Match: KAA0042597.1 (putative RNA-binding protein 18 [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 2.8e-71
Identity = 148/190 (77.89%), Postives = 163/190 (85.79%), Query Frame = 0


Query: 169 CGLIVDCWAALKINCKRQDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISED 228
           C   V   + ++   + +DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISED
Sbjct: 16  CSFKVKAVSLVEKEGETEDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISED 75

Query: 229 FLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKS 288
           FLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK M++T   
Sbjct: 76  FLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTAND 135

Query: 289 ISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRD 348
            S+AA ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ESSS  VKK KQDNIS +D
Sbjct: 136 TSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKPKQDNISFKD 195

Query: 349 NIDKP-LKTS 358
           +IDK  LKTS
Sbjct: 196 HIDKSFLKTS 203

[Close]

BLAST of Moc06g38390 vs. NCBI nr
Match: XP_008437528.1 (PREDICTED: probable RNA-binding protein 18 [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 1.1e-70
Identity = 146/172 (84.88%), Postives = 156/172 (90.70%), Query Frame = 0


Query: 187 DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 246
           DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 247 IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 306
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK M++T    S+AA ES KSRLGGS+Y
Sbjct: 62  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSY 121

Query: 307 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKP-LKTS 358
           GQ+TR+DKIAAIKNKLRALEG  ESSS  VKK KQDNIS +D+IDK  LKTS
Sbjct: 122 GQLTRSDKIAAIKNKLRALEGGGESSS--VKKPKQDNISFKDHIDKSFLKTS 171

[Close]

BLAST of Moc06g38390 vs. ExPASy Swiss-Prot
Match: Q6PBM8 (Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-14
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 199 KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 258
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +KEEA+ A
Sbjct: 24  RLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERA 83

Query: 259 KEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAI 318
            + ++GKLA  + LVVR A  +         +  A     S         ++   KI AI
Sbjct: 84  IQCLNGKLALSKKLVVRWAHAQRFEPFRGEKNMPASLEPSSSEAEDLPTSLSVNAKIRAI 143

Query: 319 KNKLRALEGEAESSS 334
           + KL+ +E   +  S
Sbjct: 144 EAKLQMMEENPDDYS 158

[Close]

BLAST of Moc06g38390 vs. ExPASy Swiss-Prot
Match: Q9CR83 (Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.3e-14
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 199 KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 258
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 259 KEKMHGKLACGRPLVVRLASEKCM----IDTTKSISRAAGESSKSRLGGSNYGQMTRTDK 318
            + ++GKLA  + LVVR A  +          K +  +   SS +    SN   ++ T K
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPAQSN---LSVTAK 145

Query: 319 IAAIKNKLRAL 326
           I AI+ KL+ +
Sbjct: 146 IKAIEAKLKMM 153

[Close]

BLAST of Moc06g38390 vs. ExPASy Swiss-Prot
Match: Q96H35 (Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.5e-14
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 199 KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 258
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 259 KEKMHGKLACGRPLVVRLA-SEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAA 318
            + ++GKLA  + LVVR A ++    D  K+          S         ++ T KI A
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVTAKIKA 145

Query: 319 IKNKLRAL 326
           I+ KL+ +
Sbjct: 146 IEAKLKMM 153

[Close]

BLAST of Moc06g38390 vs. ExPASy Swiss-Prot
Match: Q5R6W3 (Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.5e-14
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 199 KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 258
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 259 KEKMHGKLACGRPLVVRLA-SEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAA 318
            + ++GKLA  + LVVR A ++    D  K+          S         ++ T KI A
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVTAKIKA 145

Query: 319 IKNKLRAL 326
           I+ KL+ +
Sbjct: 146 IEAKLKMM 153

[Close]

BLAST of Moc06g38390 vs. ExPASy Swiss-Prot
Match: Q66J99 (Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-13
Identity = 46/133 (34.59%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 199 KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 258
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +K EA+ A
Sbjct: 26  RLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETKAEAERA 85

Query: 259 KEKMHGKLACGRPLVVRLAS------EKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRT 318
              ++GK+A  + LVVR A       + C  +    IS     S++          ++ +
Sbjct: 86  IHCLNGKMALSKKLVVRWAHAQIKRYDNCKNEKVLPISLEPSSSTE-----PTQSTLSVS 145

Query: 319 DKIAAIKNKLRAL 326
            KI AI+ KL+ +
Sbjct: 146 AKIKAIEAKLKMM 153

[Close]

BLAST of Moc06g38390 vs. ExPASy TrEMBL
Match: A0A6J1DXL8 (probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 2.5e-89
Identity = 172/174 (98.85%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 184 KRQDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 243
           +R+DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 19  RRKDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 78

Query: 244 FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 303
           FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG
Sbjct: 79  FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 138

Query: 304 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 358
           SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS
Sbjct: 139 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 192

[Close]

BLAST of Moc06g38390 vs. ExPASy TrEMBL
Match: A0A6J1DUC5 (probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 2.7e-88
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 187 DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 246
           DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 53  DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 112

Query: 247 IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 306
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY
Sbjct: 113 IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 172

Query: 307 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 358
           GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS
Sbjct: 173 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 223

[Close]

BLAST of Moc06g38390 vs. ExPASy TrEMBL
Match: A0A6J1DUD9 (probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 2.7e-88
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 187 DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 246
           DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 4   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63

Query: 247 IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 306
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY
Sbjct: 64  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 123

Query: 307 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 358
           GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS
Sbjct: 124 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKPLKTS 174

[Close]

BLAST of Moc06g38390 vs. ExPASy TrEMBL
Match: A0A5A7TLJ6 (Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00930 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.4e-71
Identity = 148/190 (77.89%), Postives = 163/190 (85.79%), Query Frame = 0


Query: 169 CGLIVDCWAALKINCKRQDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISED 228
           C   V   + ++   + +DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISED
Sbjct: 16  CSFKVKAVSLVEKEGETEDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISED 75

Query: 229 FLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKS 288
           FLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK M++T   
Sbjct: 76  FLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTAND 135

Query: 289 ISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRD 348
            S+AA ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ESSS  VKK KQDNIS +D
Sbjct: 136 TSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKPKQDNISFKD 195

Query: 349 NIDKP-LKTS 358
           +IDK  LKTS
Sbjct: 196 HIDKSFLKTS 203

[Close]

BLAST of Moc06g38390 vs. ExPASy TrEMBL
Match: A0A1S3ATX2 (probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.2e-71
Identity = 146/172 (84.88%), Postives = 156/172 (90.70%), Query Frame = 0


Query: 187 DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 246
           DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 247 IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 306
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK M++T    S+AA ES KSRLGGS+Y
Sbjct: 62  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSY 121

Query: 307 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDKP-LKTS 358
           GQ+TR+DKIAAIKNKLRALEG  ESSS  VKK KQDNIS +D+IDK  LKTS
Sbjct: 122 GQLTRSDKIAAIKNKLRALEGGGESSS--VKKPKQDNISFKDHIDKSFLKTS 171

[Close]

BLAST of Moc06g38390 vs. TAIR 10
Match: AT5G52545.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 5.4e-12
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 262 MHGKLACGRPLVVRLASEKCMIDTTKSIS-RAAGESSKSR-LGGSNYGQMTRTDKIAAIK 321
           MHG+LACGRPLVVRLASEK + D++   S R+  E +++R + GS+ GQM+R +K+ AIK
Sbjct: 1   MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGSSSGQMSRDEKVTAIK 60

Query: 322 NKLRALEGEAESSSSRVKKQK 341
           NKL+ALE   E      KKQK
Sbjct: 61  NKLKALE---EDEKRDPKKQK 78

[Close]

BLAST of Moc06g38390 vs. TAIR 10
Match: AT1G71770.1 (poly(A)-binding protein 5 )

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-09
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 198 SKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 257
           S LY+ NLD  + +  L +MFS +G + S   + +++G      RGF F+ YS+ EEA L
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS----RGFGFVAYSNPEEALL 401

Query: 258 AKEKMHGKLACGRPLVVRLASEK 281
           A ++M+GK+   +PL V LA  K
Sbjct: 402 AMKEMNGKMIGRKPLYVALAQRK 420

[Close]

BLAST of Moc06g38390 vs. TAIR 10
Match: AT1G71770.2 (poly(A)-binding protein 5 )

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-09
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 198 SKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 257
           S LY+ NLD  + +  L +MFS +G + S   + +++G      RGF F+ YS+ EEA L
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS----RGFGFVAYSNPEEALL 401

Query: 258 AKEKMHGKLACGRPLVVRLASEK 281
           A ++M+GK+   +PL V LA  K
Sbjct: 402 AMKEMNGKMIGRKPLYVALAQRK 420

[Close]

BLAST of Moc06g38390 vs. TAIR 10
Match: AT3G16380.1 (poly(A) binding protein 6 )

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-09
Identity = 30/99 (30.30%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 176 WAALKINCKRQDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRG 235
           W+   +  +R+  +GF      + LY+ NLD  IT + L +MF PFG I+S   +     
Sbjct: 96  WSQRDLAYRRRTRTGF------ANLYVKNLDSSITSSCLERMFCPFGSILSCKVV----- 155

Query: 236 PKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVV 275
            + G+ +GF F+++ +++ A  A+  +HG +  G+ L V
Sbjct: 156 EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183

[Close]

BLAST of Moc06g38390 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 59.3 bits (142), Expect = 7.3e-09
Identity = 38/117 (32.48%), Postives = 53/117 (45.30%), Query Frame = 0


Query: 174 DCWAALKINCKRQDSSGFVDEKC---ESKLYIGNLDLRITEATLIKMFSPFGKIISEDFL 233
           D    L  +C   DSS          ++KLY+  L  R TE TL   F  FG +I  + +
Sbjct: 50  DIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV 109

Query: 234 WHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTK 288
                     P+GFAF+ Y ++EEA  A + MHGK   GR + V  A  +  +   K
Sbjct: 110 ---MDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAK 163

The following BLAST results are available for this feature:

BLAST of Moc06g38390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157809.1	5.1e-89	98.85	probable RNA-binding protein 18 isoform X2 [Momordica charantia]	[more]
XP_022157813.1	5.6e-88	100.00	probable RNA-binding protein 18 isoform X3 [Momordica charantia]	[more]
XP_022157798.1	5.6e-88	100.00	probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1...	[more]
KAA0042597.1	2.8e-71	77.89	putative RNA-binding protein 18 [Cucumis melo var. makuwa]	[more]
XP_008437528.1	1.1e-70	84.88	PREDICTED: probable RNA-binding protein 18 [Cucumis melo]	[more]

BLAST of Moc06g38390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBM8	2.5e-14	35.56	Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1	[more]
Q9CR83	7.3e-14	37.40	Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1	[more]
Q96H35	9.5e-14	36.72	Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1	[more]
Q5R6W3	9.5e-14	36.72	Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1	[more]
Q66J99	1.2e-13	34.59	Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1	[more]

BLAST of Moc06g38390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXL8	2.5e-89	98.85	probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DUC5	2.7e-88	100.00	probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DUD9	2.7e-88	100.00	probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A5A7TLJ6	1.4e-71	77.89	Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3ATX2	5.2e-71	84.88	probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=...	[more]

BLAST of Moc06g38390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52545.1	5.4e-12	54.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G71770.1	1.9e-09	39.76	poly(A)-binding protein 5	[more]
AT1G71770.2	1.9e-09	39.76	poly(A)-binding protein 5	[more]
AT3G16380.1	3.3e-09	30.30	poly(A) binding protein 6	[more]
AT1G73530.1	7.3e-09	32.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 315..342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..357
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 188..349
None	No IPR available	PANTHER	PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	coord: 188..349
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 199..275 e-value: 3.6E-20 score: 83.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 200..272 e-value: 1.8E-13 score: 50.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 198..279 score: 16.824184
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 195..287 e-value: 1.1E-21 score: 79.0
IPR039157	RNA-binding protein 18, RNA recognition motif	CDD	cd12355	RRM_RBM18	coord: 199..278 e-value: 1.48704E-30 score: 109.673
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 189..283

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g38390.1	Moc06g38390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding