Moc06g37830 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g37830
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionMitochondrial import inner membrane translocase subunit
Locationchr6: 29109011 .. 29110579 (-)
RNA-Seq ExpressionMoc06g37830
SyntenyMoc06g37830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCATTTTCATCGCCTTCAAGCGGCCCTTCTTCCCAATTTTCTGCCCATGAATTCAAGGATCAGCTCAAGACTCAACTTGCCCAGGCCTATGCCGAGGAGTTCCTCGAGGTTCAACTATCCCTACTTGTTTTGTTTCCCTCTCTTGTCGCAAGCGTTATCAAACTTGTTAGTAGAGTTACCGATATGTATGTGCAGATATGTATATGGTCAGTTCGTTGAATGCGTTTCACTATTACGTGTTATGTGACGGTTCTTTGTTCGTGGATGAAATGGGAGAAAGGAATTAATAATTTGCGGTTTCGAAGTTTGGTAGCGACGTAGATTTATAGGTGCTGTTCGTGTAGCAATAGCGGCTGGGTTTTAAAGATGGGGGTGTAAGAATTAATAAATACGAATTCTTGAGAATTTAGATTCTTGGGTACTCTATCCCAAGATTCCCAACATCAATGGAATTGCTTATGTCTTATTTCTCAATTCCAGTTCAACTTGGTTTTTATACTCATGTTTTGTTTTTACTAATTGAAGATCTGGAAATGTAAAAAAGGAATGGAAGTTCTTTAGTGATTCGAGTGCTATATTATAAACTTTTAACATGACAATGCATATTGAATTAAAAGACTTGATCTCGCTCTCTATTTCCCGAATTTATTTTTCATCGAGGTATCTTGGTGATTATAAGTTTGCAAGTGTCTTGTATTTTTGTTGTCTAACTTGATTTGCTAGTGTAGGATGGAATGTAAAATTTTATTATTCCATTGTTTTGGATGAGGAGAGGTAGGAAGTAGGATGATCAAAATTTCCAAAAGAAATTTTGTGAACCTTTATAAATGGTGCTTAACATGAGGTCGTGCATTTAACGAATTATATAATAGAGGCCTTATTGTTTCTGTTGAAGTTGACATTAATTGCTAGAAGTTTTTTTTCCCTCAGTATTTCTTAAGACTAAAACATGAGGAAGTGTTCATGAAGGTGGATGCAAAAGATTAGAAATCATTTCTAGAGGTTCTGGTAAACAATCTAGGCCCCTTCTTATCCCACCTAATTTGGTGTTGTTTCAGACCATTTAGCTTCTACATGAATAAAAAACCAGGTCAGCCTTCTTCAGCATGTGCATGGAAAGTAGACCACCAATTTTCTACTTTTTCCAGGAACGGAGGGGAATCCAGCCATACATTTTCAAAATGGAAAGGGATTAAACCACAATTTTGAGCACCCAATTTTAAAAGAAGCGGGAAATGGTCAAACGTAGATATTGTAATTCTATCCAGCCAAAATTCTCTAAATTTATTTGCTAACCCTCTAGAATAAAAATCTATCAATCCTGGAGTCAATCAGACAACCTCTATATGCACAGACCAAATGAAGAGGCCATTCTGAAGCTAAACATCAATAATCTGCAGATCTGAAATTGGGGAATTAAAGGCCCTCATGCTGACTGACACTGGCCTCGTTCAGATTTTCAGATATCCTCCTAATTATGTTGACATCCCCCCAGTACACCAGCTACCCTGTCATAAACCAGCCAAGTCTGCCATCTCCTGCCAGAAATCAGAACGAAAATAA

mRNA sequence

ATGGATTCATTTTCATCGCCTTCAAGCGGCCCTTCTTCCCAATTTTCTGCCCATGAATTCAAGGATCAGCTCAAGACTCAACTTGCCCAGGCCTATGCCGAGGAGTTCCTCGAGGTTCAACTATCCCTACTTGTTTTGTTTCCCTCTCTTGTCGCAAGCGTTATCAAACTTGTTAGTAGAGTTACCGATATATCTGAAATTGGGGAATTAAAGGCCCTCATGCTGACTGACACTGGCCTCGTTCAGATTTTCAGATATCCTCCTAATTATGTTGACATCCCCCCAGTACACCAGCTACCCTGTCATAAACCAGCCAAGTCTGCCATCTCCTGCCAGAAATCAGAACGAAAATAA

Coding sequence (CDS)

ATGGATTCATTTTCATCGCCTTCAAGCGGCCCTTCTTCCCAATTTTCTGCCCATGAATTCAAGGATCAGCTCAAGACTCAACTTGCCCAGGCCTATGCCGAGGAGTTCCTCGAGGTTCAACTATCCCTACTTGTTTTGTTTCCCTCTCTTGTCGCAAGCGTTATCAAACTTGTTAGTAGAGTTACCGATATATCTGAAATTGGGGAATTAAAGGCCCTCATGCTGACTGACACTGGCCTCGTTCAGATTTTCAGATATCCTCCTAATTATGTTGACATCCCCCCAGTACACCAGCTACCCTGTCATAAACCAGCCAAGTCTGCCATCTCCTGCCAGAAATCAGAACGAAAATAA

Protein sequence

MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLEVQLSLLVLFPSLVASVIKLVSRVTDISEIGELKALMLTDTGLVQIFRYPPNYVDIPPVHQLPCHKPAKSAISCQKSERK
Homology
[Close]
BLAST of Moc06g37830 vs. NCBI nr
Match: XP_022159838.1 (mitochondrial import inner membrane translocase subunit Tim13 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-09
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 38

[Close]
BLAST of Moc06g37830 vs. NCBI nr
Match: KAG7017060.1 (Mitochondrial import inner membrane translocase subunit TIM13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLEV--QLSLLVLFPSLVASVIKLV 60
          MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLEV  Q+ LL L  SL     +L+
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFELL 60

[Close]
BLAST of Moc06g37830 vs. NCBI nr
Match: XP_038906948.1 (mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG SSQFSA+EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSSQFSANEFRDQLKTQLAQAYAEEFLE 38

[Close]
BLAST of Moc06g37830 vs. NCBI nr
Match: KAA0042633.1 (mitochondrial import inner membrane translocase subunit Tim13 [Cucumis melo var. makuwa] >TYK06034.1 mitochondrial import inner membrane translocase subunit Tim13 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLEV 40
          MDSFSSPSSG S QFSA+EF+DQLKTQLAQAYAEEFLE+
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLEI 39

[Close]
BLAST of Moc06g37830 vs. NCBI nr
Match: XP_022929050.1 (uncharacterized protein LOC111435758 isoform X4 [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLE 38

[Close]
BLAST of Moc06g37830 vs. ExPASy TrEMBL
Match: A0A6J1DZZ6 (Mitochondrial import inner membrane translocase subunit OS=Momordica charantia OX=3673 GN=LOC111026139 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.8e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 38

[Close]
BLAST of Moc06g37830 vs. ExPASy TrEMBL
Match: A0A5D3C411 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001350 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLEV 40
          MDSFSSPSSG S QFSA+EF+DQLKTQLAQAYAEEFLE+
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLEI 39

[Close]
BLAST of Moc06g37830 vs. ExPASy TrEMBL
Match: A0A6J1I4K9 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469108 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLE 38

[Close]
BLAST of Moc06g37830 vs. ExPASy TrEMBL
Match: A0A0A0KK66 (Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=3659 GN=Csa_5G146860 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG S QFSA+EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLE 38

[Close]
BLAST of Moc06g37830 vs. ExPASy TrEMBL
Match: A0A6J1ELP2 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX=3662 GN=LOC111435758 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLE 38

The following BLAST results are available for this feature:
BLAST of Moc06g37830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159838.11.0e-09100.00mitochondrial import inner membrane translocase subunit Tim13 [Momordica charant... [more]
KAG7017060.12.5e-0869.35Mitochondrial import inner membrane translocase subunit TIM13, partial [Cucurbit... [more]
XP_038906948.11.2e-0792.11mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida... [more]
KAA0042633.12.7e-0787.18mitochondrial import inner membrane translocase subunit Tim13 [Cucumis melo var.... [more]
XP_022929050.14.6e-0789.47uncharacterized protein LOC111435758 isoform X4 [Cucurbita moschata][more]
BLAST of Moc06g37830 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc06g37830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DZZ64.8e-10100.00Mitochondrial import inner membrane translocase subunit OS=Momordica charantia O... [more]
A0A5D3C4111.3e-0787.18Mitochondrial import inner membrane translocase subunit Tim13 OS=Cucumis melo va... [more]
A0A6J1I4K92.3e-0789.47Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3... [more]
A0A0A0KK662.3e-0789.47Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=36... [more]
A0A6J1ELP22.3e-0789.47Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX... [more]
BLAST of Moc06g37830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g37830.1Moc06g37830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045039 protein insertion into mitochondrial inner membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0042719 mitochondrial intermembrane space protein transporter complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding